mRNA_Ecto-sp13_S_contig88551.20351.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88551.20351.1
Unique NamemRNA_Ecto-sp13_S_contig88551.20351.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: D8LTT5_ECTSI (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT5_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.400e-13
Identity = 41/56 (73.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   22 LRAGDRVVDMATGTADVAIMISEELTKLE--------------VIGIDPSARMLEV 147
            LRAGDRVVDMATGTADVAIMISEEL KLE              VIGIDPSARMLEV
Sbjct:   34 LRAGDRVVDMATGTADVAIMISEELAKLEGAPEGTIPGTVEPEVIGIDPSARMLEV 89          
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: A0A6H5KFI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI5_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-11
Identity = 40/59 (67.80%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   19 KLRAGDRVVDMATGTADVAIMISEELTKLE----------------VIGIDPSARMLEV 147
            +LR GDRVVDMATGTADVAIMISEEL KLE                VIGIDPSARMLEV
Sbjct:   79 ELRDGDRVVDMATGTADVAIMISEELAKLEGTPGDRGTISGTVEPEVIGIDPSARMLEV 137          
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: A0A2E0TDR9_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2E0TDR9_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 1.470e-8
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 HSWREHKLRA---GDRVVDMATGTADVAIMISEELTKLEVIGIDPSARMLEV 147
            HSWR   +RA    DRV+D+ATGTAD+AI +++   + EV+G+DPSA ML V
Sbjct:   27 HSWRRKTVRALGEADRVLDLATGTADLAIAVAKTRREAEVVGLDPSANMLAV 78          
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: A0A4Q5XG34_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XG34_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 3.160e-8
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    4 SWREHKLRA-----GDRVVDMATGTADVAIMISEELTKLEVIGIDPSARMLEV 147
            SWR+  +RA     G RV+D+ATGTAD+AIMI+ +   + ++G+DPSA+MLEV
Sbjct:   39 SWRKKTVRALELKPGARVLDLATGTADLAIMIARQHPHVSLVGVDPSAKMLEV 91          
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: A0A2E4X356_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=2 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E4X356_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 4.220e-8
Identity = 25/43 (58.14%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   19 KLRAGDRVVDMATGTADVAIMISEELTKLEVIGIDPSARMLEV 147
            +L+AGD+++D+ATGTAD+AIM +  +  LEV+G+DPS  MLEV
Sbjct:   45 QLKAGDQLLDLATGTADLAIMAAHRVPDLEVVGVDPSPAMLEV 87          
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: A0A3M1TVZ9_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1TVZ9_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 1.200e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   22 LRAGDRVVDMATGTADVAIMISEELTKLEVIGIDPSARMLEV 147
            LRAGDRV+D+ATGT D+AI I+     + V+G+DPS RMLEV
Sbjct:   51 LRAGDRVLDLATGTGDLAIAIARRHPDVTVVGVDPSRRMLEV 92          
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: A0A661NBA2_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661NBA2_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 2.050e-7
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    4 SWREH-----KLRAGDRVVDMATGTADVAIMISEELTKLEVIGIDPSARMLEV 147
            SWR       +LRAG RV+D+ATGT D+A+MI+   T   V+G DPS RMLEV
Sbjct:   23 SWRRKTVDAMELRAGARVLDLATGTGDLALMIARMHTDAHVVGSDPSKRMLEV 75          
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: A0A850B4E0_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850B4E0_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 2.400e-7
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   10 REHKLRAGDRVVDMATGTADVAIMISEELTKLEVIGIDPSARMLEV 147
            +E  LR G  V+D+ATGT D+AI+I+ E   + VIG+DPSARMLEV
Sbjct:   46 QELHLRPGATVLDLATGTGDLAILIAHENPDVRVIGVDPSARMLEV 91          
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: A0A7Y5KQS1_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5KQS1_9DELT)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    4 SWREHKLRA------GDRVVDMATGTADVAIMISEELTKLEVIGIDPSARMLEV 147
            SWR     A      G RV+D+ATGTAD+AI I+     +EV+G+DPSA+MLEV
Sbjct:   23 SWRRRASAALALSDKGARVLDVATGTADLAIEIATSHASVEVVGVDPSAKMLEV 76          
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Match: A0A7S0DP24_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DP24_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.350e-6
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    4 SWREH-----KLRAGDRVVDMATGTADVAIMISEELTKLEVIGIDPSARMLEV 147
            SWR       +L+ GDRV+D+ATGTADVAI+ +++   +EV+GIDPS  M+E+
Sbjct:   66 SWRLELVSSLELQDGDRVLDLATGTADVAILEAKDEKGVEVLGIDPSENMIEL 118          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88551.20351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT5_ECTSI8.400e-1373.21Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
A0A6H5KFI5_9PHAE1.120e-1167.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E0TDR9_9DELT1.470e-853.85Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A4Q5XG34_9DELT3.160e-852.83Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A2E4X356_9DELT4.220e-858.14Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A3M1TVZ9_9DELT1.200e-761.90Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A661NBA2_9DELT2.050e-754.72Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A850B4E0_9DELT2.400e-758.70Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A7Y5KQS1_9DELT1.090e-651.85Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A7S0DP24_9EUKA1.350e-650.94Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88551contigEcto-sp13_S_contig88551:262..456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score68.9
Seed ortholog evalue7.3e-10
Seed eggNOG ortholog2880.D8LTT5
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity
EggNOG OGsCOG2226@1,KOG1540@2759
Cds size147
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464157.8809218-CDS-Ecto-sp13_S_contig88551:261..3001681464157.8809218-CDS-Ecto-sp13_S_contig88551:261..300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88551 262..300 -
1681464157.8955696-CDS-Ecto-sp13_S_contig88551:348..4561681464157.8955696-CDS-Ecto-sp13_S_contig88551:348..456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88551 349..456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88551.20351.1prot_Ecto-sp13_S_contig88551.20351.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88551 262..456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88551.20351.1

>prot_Ecto-sp13_S_contig88551.20351.1 ID=prot_Ecto-sp13_S_contig88551.20351.1|Name=mRNA_Ecto-sp13_S_contig88551.20351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
HSWREHKLRAGDRVVDMATGTADVAIMISEELTKLEVIGIDPSARMLEV
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mRNA from alignment at Ecto-sp13_S_contig88551:262..456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88551.20351.1 ID=mRNA_Ecto-sp13_S_contig88551.20351.1|Name=mRNA_Ecto-sp13_S_contig88551.20351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88551:262..456- (Ectocarpus species13 EcNAP12_S_4_19m)
CATTCTTGGCGCGAACACAAGCTGCGAGCTGGAGACCGAGTGGTAGACAT GGCGACGGGGACGGCAGACGTCGCGATCATGATCTCCGAAGAACTGACCA AGCTGGAGGTGACCCCAGGCGACCGAGAAACGATCCCGGAAACGGTCGAA CCGGAGGTGATCGGGATCGACCCTAGCGCGAGGATGCTAGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88551:262..456-

>mRNA_Ecto-sp13_S_contig88551.20351.1 ID=mRNA_Ecto-sp13_S_contig88551.20351.1|Name=mRNA_Ecto-sp13_S_contig88551.20351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88551:262..456- (Ectocarpus species13 EcNAP12_S_4_19m)
CATTCTTGGCGCGAACACAAGCTGCGAGCTGGAGACCGAGTGGTAGACAT
GGCGACGGGGACGGCAGACGTCGCGATCATGATCTCCGAAGAACTGACCA
AGCTGGAGGTGATCGGGATCGACCCTAGCGCGAGGATGCTAGAGGTG
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