mRNA_Ecto-sp13_S_contig12450.2035.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12450.2035.1
Unique NamemRNA_Ecto-sp13_S_contig12450.2035.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12450.2035.1 vs. uniprot
Match: A0A6H5K771_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K771_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 1.040e-95
Identity = 214/222 (96.40%), Postives = 214/222 (96.40%), Query Frame = 1 
Query:    1 YVYGGEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAALASXXXXXXXXXXXXXXXXXXXXXXXTTSWSESDTAWXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYLPKWGPGAGFTSPTLDESVRGFHAGGGGGGLRRGRDSLASSVGTAAS----VFSV 654
            YVYG EHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAALASXXXXXXXXXXXXXXXXXXXXXXXTTSWSESDTAWXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYLPKWGPGAGFTSPTLD SVRGFHAGGGG GLRRGRDS ASSVGTAAS    VFSV
Sbjct:  294 YVYGAEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAALASXXXXXXXXXXXXXXXXXXXXXXXTTSWSESDTAWXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYLPKWGPGAGFTSPTLDGSVRGFHAGGGG-GLRRGRDSAASSVGTAASLNPSVFSV 514
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BLAST of mRNA_Ecto-sp13_S_contig12450.2035.1 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 8.220e-92
Identity = 188/239 (78.66%), Postives = 188/239 (78.66%), Query Frame = 1 
Query:    1 YVYGGEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAALASXXXXXXXXXXXXXXXXXXXXXXXT-TSWSESDTAWXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYLPKWGPGAGFTSPTLDESVRGFHAGGGGGG-----LRRGRDSLASSVGTAAS----VFSVGXXXXLRLRRD 687
            YVYG EHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAA ASXXXXXXXXXXXXXXXXXXXXXXX  TSW ESDTAW                          AAGYLPKWGPGAGFTSPTLD SVRGFHAGGG        LRR RDS ASSVGT AS    VFSVG    LRLRRD
Sbjct:  854 YVYGAEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAAHASXXXXXXXXXXXXXXXXXXXXXXXXXTSWPESDTAWGSSSDQSDLDTDASGVILHEGDRVWGAAGYLPKWGPGAGFTSPTLDGSVRGFHAGGGXXXXXXXXLRRSRDSAASSVGTVASLNPSVFSVGSGGGLRLRRD 1092
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BLAST of mRNA_Ecto-sp13_S_contig12450.2035.1 vs. uniprot
Match: A0A448ZKD0_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKD0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.690e-20
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   13 GEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAALAS 309
            G+  A+  Q+++ITS+WMT  TQCC A++K   YY  + D +LG+FL D+CFN +LKCQN +CK+S  DH LSFVHN G ++ITV  +   L  A + S
Sbjct: 1119 GQITAFDHQSILITSVWMTDKTQCCPAEVKGICYYSVQ-DVSLGQFLRDSCFNLSLKCQNPSCKKSVLDHSLSFVHNDGLINITVDHMDEPLPPAPVDS 1216
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BLAST of mRNA_Ecto-sp13_S_contig12450.2035.1 vs. uniprot
Match: A0A7S0FC12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0FC12_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-19
Identity = 40/79 (50.63%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:   13 GEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHG 249
            G+  A++ Q+++ITS+WMT+ +QCC A++K   YY  + D +LG+FL D+CFN +LKCQN +CK+S  +H LSF+HN G
Sbjct:   33 GKITAFEHQSILITSVWMTEKSQCCPAEVKGICYYSLQ-DVSLGQFLRDSCFNLSLKCQNTSCKKSVLEHSLSFIHNDG 110
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BLAST of mRNA_Ecto-sp13_S_contig12450.2035.1 vs. uniprot
Match: F0YMC6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMC6_AURAN)

HSP 1 Score: 69.3 bits (168), Expect = 5.750e-10
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:   25 AYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKFLVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITV 267
            A+  Q++++TS+WM+Q  QC +A++K   YY  + D  LG+FL+D+CFN +LK  + + K+S  D    F HN GR+ ITV
Sbjct:  510 AFDHQSLLVTSVWMSQRAQCASAEVKGILYYTPQ-DVCLGQFLLDSCFNVDLKFPHGD-KKSVLDITQIFYHNDGRIPITV 588
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12450.2035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K771_9PHAE1.040e-9596.40PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G3Z3_ECTSI8.220e-9278.661-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A448ZKD0_9STRA7.690e-2049.491-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S0FC12_9STRA1.240e-1950.63Hypothetical protein (Fragment) n=1 Tax=Rhizosolen... [more]
F0YMC6_AURAN5.750e-1043.21Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12450contigEcto-sp13_S_contig12450:2819..4381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score308.1
Seed ortholog evalue3.3e-81
Seed eggNOG ortholog2880.D7G3Z3
Model size690
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0230@2759
EC2.7.1.150
Cds size687
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462663.1553104-CDS-Ecto-sp13_S_contig12450:2818..29471681462663.1553104-CDS-Ecto-sp13_S_contig12450:2818..2947Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12450 2819..2947 +
1681462663.170812-CDS-Ecto-sp13_S_contig12450:3507..36911681462663.170812-CDS-Ecto-sp13_S_contig12450:3507..3691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12450 3508..3691 +
1681462663.1834655-CDS-Ecto-sp13_S_contig12450:4006..43801681462663.1834655-CDS-Ecto-sp13_S_contig12450:4006..4380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12450 4007..4380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12450.2035.1prot_Ecto-sp13_S_contig12450.2035.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12450 2819..4380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12450.2035.1

>prot_Ecto-sp13_S_contig12450.2035.1 ID=prot_Ecto-sp13_S_contig12450.2035.1|Name=mRNA_Ecto-sp13_S_contig12450.2035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
YVYGGEHFAYQTQNMMITSLWMTQGTQCCNADLKFFRYYKHKHDTALGKF
LVDNCFNPNLKCQNVNCKRSARDHVLSFVHNHGRVDITVGWLKFDLAAAA
LASAAAEHVARGGSGEDQDDEDDDDDTTSWSESDTAWGSSSDQSDFDTDA
SGVILYEGDRVWGAAGYLPKWGPGAGFTSPTLDESVRGFHAGGGGGGLRR
GRDSLASSVGTAASVFSVGGGGGLRLRRD
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mRNA from alignment at Ecto-sp13_S_contig12450:2819..4381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12450.2035.1 ID=mRNA_Ecto-sp13_S_contig12450.2035.1|Name=mRNA_Ecto-sp13_S_contig12450.2035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1563bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12450:2819..4381+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGTGTACGGCGGGGAGCACTTCGCGTACCAGACCCAGAACATGATGAT
CACGAGCCTGTGGATGACGCAGGGGACTCAGTGCTGCAACGCCGACCTCA
AGTTCTTCCGTTACTACAAGCACAAGCACGTGGGTGGATCTTGAACGATG
AAATATTTTCCTTGTTGCTTGTTTTTTCCCTTTGTACATTTGTGTACAGT
AGACGTGTGCTTGATTTTGTGTTCATGATTTTTTTTTTCAAGCTGCTCTC
TTGCTGTGTGTTCGTCTTGATCCCCTGTTGTGTCGGCACGAGTCTACGCA
CCATTCGGTGTATACATTTTGACGGTGCATCAGCCGGTGTACCACGGGAG
GAAGGAAGGCTACACATGAGCCCTTTGTTTTTTCCCCTCGGAATTGTTTG
TCTCGTGTTGTGGTCAGGGCACTGCTCTGGGCAAGTTTTTGTGGTGGATA
CCACTTGTGCTTGACCCCCCGGGAAATGTCATGTACCCGGAACCATCTCC
TCAATTTTTGAGACAGTAAAATTTGTCTTCCCTTTGCGCTAAATTGGTTG
TCCTTTGTTGTGTTTTTTTTGGTGGATACCACTTGTGCTTGACCCCCGGG
AAAACGTCATGTTCTCATAACCATCTCCTCAATTTCGAGACAGCAGGACT
TGTTCTCCCTTCGCCCGGAATCCTTGTCTTGTTTGCCAGGACACGGCTCT
GGGCAAGTTCTTGGTGGACAACTGCTTCAACCCCAACCTCAAGTGCCAGA
ACGTGAACTGCAAACGAAGCGCCCGCGACCACGTGCTGAGTTTCGTCCAC
AACCATGGCCGCGTGGACATAACCGTGGGCTGGCTCAAGTTCGATCTTGC
CGCCGCCGCGCTCGCCTCGGCTGGTGAGTTGGCTGTGAGCAGCAGCAGCA
GCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTCGTAGT
TATTGTTGATGTATAGTAGCAGAAGTAGCTGCAGCATCATCAGCAACATC
GTAATACAGCAACACCGAAACAAAACGCCTTCGAATCTCTTCCGCGTTGC
CCCCCCCCCCCCCCGCCAACACCGACTATGAGTACACCCCCCCCGCCAAC
ACCACATGTAACAGCCGCGAAAGAGGAACACGATCAAGTCTCTTCTACCT
TGCCCCCCCCCAACACCACATGTATCACCCCCAAACAGCCGCGGAACACG
TAGCGAGAGGCGGATCGGGCGAAGATCAAGACGACGAAGACGACGACGAC
GACACCACCTCGTGGTCCGAGAGCGACACGGCCTGGGGGTCCTCCTCCGA
CCAATCCGACTTCGACACCGATGCCAGCGGCGTTATCCTTTACGAGGGCG
ACCGCGTCTGGGGTGCCGCCGGCTACCTGCCGAAGTGGGGCCCCGGCGCC
GGGTTCACCTCCCCTACGCTTGACGAAAGTGTCCGGGGTTTCCATGCCGG
CGGCGGCGGCGGCGGATTGAGGCGGGGTCGGGATTCTCTGGCTAGTAGCG
TCGGCACAGCGGCGTCGGTGTTCTCGGTTGGCGGCGGGGGGGGCCTGCGG
CTGCGGAGGGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12450:2819..4381+

>mRNA_Ecto-sp13_S_contig12450.2035.1 ID=mRNA_Ecto-sp13_S_contig12450.2035.1|Name=mRNA_Ecto-sp13_S_contig12450.2035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12450:2819..4381+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGTGTACGGCGGGGAGCACTTCGCGTACCAGACCCAGAACATGATGAT
CACGAGCCTGTGGATGACGCAGGGGACTCAGTGCTGCAACGCCGACCTCA
AGTTCTTCCGTTACTACAAGCACAAGCACGACACGGCTCTGGGCAAGTTC
TTGGTGGACAACTGCTTCAACCCCAACCTCAAGTGCCAGAACGTGAACTG
CAAACGAAGCGCCCGCGACCACGTGCTGAGTTTCGTCCACAACCATGGCC
GCGTGGACATAACCGTGGGCTGGCTCAAGTTCGATCTTGCCGCCGCCGCG
CTCGCCTCGGCTGCCGCGGAACACGTAGCGAGAGGCGGATCGGGCGAAGA
TCAAGACGACGAAGACGACGACGACGACACCACCTCGTGGTCCGAGAGCG
ACACGGCCTGGGGGTCCTCCTCCGACCAATCCGACTTCGACACCGATGCC
AGCGGCGTTATCCTTTACGAGGGCGACCGCGTCTGGGGTGCCGCCGGCTA
CCTGCCGAAGTGGGGCCCCGGCGCCGGGTTCACCTCCCCTACGCTTGACG
AAAGTGTCCGGGGTTTCCATGCCGGCGGCGGCGGCGGCGGATTGAGGCGG
GGTCGGGATTCTCTGGCTAGTAGCGTCGGCACAGCGGCGTCGGTGTTCTC
GGTTGGCGGCGGGGGGGGCCTGCGGCTGCGGAGGGAT
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