mRNA_Ecto-sp13_S_contig8855.20350.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: D7FRG3_ECTSI (PObg2, plastid Obg/CgtA-like GTPase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRG3_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 4.770e-142 Identity = 236/259 (91.12%), Postives = 236/259 (91.12%), Query Frame = 1
Query: 1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALAVVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALAEPPANSS 777
GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALAVVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERL M XXXXXXXXXX VISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLK VMESLGVLQELREEGA DGDVVLVGEKEIALAEPPAN S
Sbjct: 312 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALAVVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLQMLRQAAMGXXXXXXXXXXEVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLK------------VMESLGVLQELREEGATDGDVVLVGEKEIALAEPPANLS 558
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A836CHG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG5_9STRA) HSP 1 Score: 213 bits (541), Expect = 1.060e-60 Identity = 148/262 (56.49%), Postives = 172/262 (65.65%), Query Frame = 1
Query: 1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSA----RVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALAEP 762
GVCDP ALGF G+GMVLADIPGLLEGAH+GVGLG AFLRHVERCR IIH+VSGAS DPVGD+ AINQELALFS LA VVVLNKIDLPEVE +EEL ++E HTR+M +S+ G V ELMRRT + L +EA+ XXXXXXXXXXXXXXXXXX RV W++ D RL ++ DW+YY A +RF+ G+M++LGVL ELR GA GD V VG +AL P
Sbjct: 423 GVCDPLALGFVGRGMVLADIPGLLEGAHRGVGLGPAFLRHVERCRLIIHVVSGASTDPVGDYVAINQELALFSADLARKPQVVVLNKIDLPEVEAIKEELLERIRERANHTRIMEVSAARGDSVTELMRRTSQLLARLEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERVHRGDDGGWVVTDARLERLGGEMDWDYYAAEERFI------------GLMDALGVLSELRTAGADWGDSVTVGSVTVALRRP 672
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A7S3XR55_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR55_HETAK) HSP 1 Score: 190 bits (483), Expect = 5.850e-56 Identity = 115/261 (44.06%), Postives = 154/261 (59.00%), Query Frame = 1
Query: 1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREE-LETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISE-----DSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIAL 753
GVC+P+ALGF+G+GMVLADIPGLLEGAHKGVGLGR FLRHV+RC+AI+H+V G+S DPVGDF AINQEL LF+ LA VVV+ K DL EV ++ E LE LKE MGH RL++IS+ G +V+ LM RTR+ LD +E EKERL I+ ++ W + + +L M + DW+YYG R ++ + S +L+ + + GA GD +L+G+K +
Sbjct: 48 GVCEPDALGFRGRGMVLADIPGLLEGAHKGVGLGREFLRHVDRCKAILHLVDGSSQDPVGDFTAINQELVLFNPNLAHKPQVVVITKTDLTEVREKIESGLEEDLKEKMGHGRLLAISAVTGDNVRTLMERTRKLLDKIE----EKERLKKVEEHVAETQCADDETDSSDIAPLEGIAGRTKIMQLSVGNWKLSNPQLEYMVDSMDWQYYGTEGRLIE------------FLSSTEILKRIFQAGAKAGDRILIGDKGFCI 292
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A7S3UWE7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWE7_HETAK) HSP 1 Score: 176 bits (445), Expect = 1.220e-49 Identity = 106/250 (42.40%), Postives = 151/250 (60.40%), Query Frame = 1
Query: 25 GFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEA---EKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGA--NRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEI 747
G KG+VLADIPGLLEGAH G GLG AFLRHV+RC ++H+V+GAS DP GDF AINQELALF+ L VVVLNK+DLPEV R++EL ALKE H+R++ IS+ G VKELM+R ++F+D + +E KE +++ IS+ + + D A ++ I ++ + T+W+YY AVDRF + +M+++GV L E GA +GD++++G+ +
Sbjct: 111 GAGNKGLVLADIPGLLEGAHTGRGLGIAFLRHVQRCGVLVHVVNGASEDPAGDFEAINQELALFNPRLKEKPQVVVLNKVDLPEVAARQDELLAALKERCDHSRVLPISAATGKGVKELMQRLKKFVDSLPPQEELFEGKEAVVLDDQILDND-----------ISQAAFEIETDPAYPGQFRITGRKIENAAAMTNWDYYEAVDRFKR------------IMDAMGVTAALEERGAEEGDLIMIGDMDF 337
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: I2CRT0_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRT0_NANGC) HSP 1 Score: 165 bits (417), Expect = 7.630e-46 Identity = 102/243 (41.98%), Postives = 149/243 (61.32%), Query Frame = 1
Query: 37 KGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDL--PEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEI 747
KGMVLADIPGLLEGAH+GVGLG AFLRHV+RCR ++H+V+G SPDPVGD+ AINQELALF+ LA VVVLNKIDL PEV R +E LKE + HTR MSIS+ + T+ ELM R + L V+ EE + L+ +I++ ++ ++ ++ ++ T+W+YY AV+RF + ++E+ G+ + L++ GA +GD++++G+++
Sbjct: 74 KGMVLADIPGLLEGAHQGVGLGLAFLRHVQRCRVLVHVVNGDSPDPVGDYTAINQELALFNPKLAEKPQVVVLNKIDLISPEV---RLRVEQELKEVIPHTRFMSISAMKKTNTGELMHRVWKMLRVVKEEEGD----LLDGEVPVPLDEESYRMSYQIITDPKF------PGQFRVQGKQIEKICAMTNWDYYEAVERFQR------------ILEATGIAKALKKRGAQEGDLIMIGDRDF 291
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A835YRC8_9STRA (GTP1/OBG-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC8_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.990e-45 Identity = 104/251 (41.43%), Postives = 143/251 (56.97%), Query Frame = 1
Query: 1 GVCDPEA-LGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGE 738
GV + A +G KG+VLADIPGLLEGAH GVGLG AFLRHV+RCR ++H+V+G SPDP+GDF AI QEL LF+ LA VVVLNK+DLP V +++ E+E L M H RLM+IS+ + H ELM R + + + E+E L I D A +W + TR+ + + T+W+YY A+ RF + +M+++GV QEL GA GD++++ E
Sbjct: 235 GVWEESAEVGGSPKGLVLADIPGLLEGAHMGVGLGLAFLRHVQRCRVLVHVVNGDSPDPLGDFEAIQQELELFNIKLAGKPQVVVLNKVDLPHVAEKQAEIEAGLLAMMPHKRLMTISAAKRLHTSELMYRVLKLVQSL----PEEEELFNGEDIRTLEPDDDDEDRGFQILSDPAY-----PGQWRVAGTRIERTARMTNWDYYEAIVRFQR------------IMDAMGVNQELLSAGAKKGDLIMIDE 464
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: D7FW99_ECTSI (PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW99_ECTSI) HSP 1 Score: 169 bits (428), Expect = 2.970e-45 Identity = 107/253 (42.29%), Postives = 145/253 (57.31%), Query Frame = 1
Query: 1 GVCD---PEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGE 738
GVCD EA KG+VLADIPGLLEGAH+GVGLG AFLRHV+RCR ++H+VSG S DPVGD+RAI QEL LFS L VVVL KIDLP V +++ELE +K + HTR MSIS+ G + +ELMRR R+ ++ + + L I D + ++ + R+ Q++ T+W+YY AV RF + VME++GV L++ GA GD++++ E
Sbjct: 311 GVCDVLGDEAEAGMDKGLVLADIPGLLEGAHEGVGLGLAFLRHVQRCRVLVHLVSGDSVDPVGDYRAIQQELELFSPKLLKKQQVVVLTKIDLPHVRSKQKELENLIKAELDHTRFMSISAVAGENTQELMRRLRKLVNSLPPVDD-----LFDGEAVKMLDSPAAEDTGFSIETDPSY-----PGQFRVHGARIVQIARMTEWDYYEAVQRFQR------------VMEAMGVDAALKKAGAQAGDLIMIDE 541
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A7S1VVD0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVD0_9STRA) HSP 1 Score: 167 bits (424), Expect = 7.150e-45 Identity = 101/258 (39.15%), Postives = 152/258 (58.91%), Query Frame = 1
Query: 1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGA--NRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALA 756
GVCD LG +G G+V+ DIPGL+EGA G GLG AFLRHV+RC+ ++H+V G S DP+GDF AIN+ELA + E L+ VVVLNKID+ EV+++++EL LKE GH+R+++IS+ VKELM R ++F+D A+ + L + D + D A ++ I+ + Q+++ T WEY AVDRF + +++++G+ +++ GA DGD+V+VGE + A
Sbjct: 213 GVCD---LGDEGAGLVMCDIPGLIEGASSGAGLGPAFLRHVQRCKVLLHVVDGTSEDPIGDFEAINKELAQYDELLSSKPQVVVLNKIDVSEVQEKQDELMAKLKEAAGHSRVLAISAATTERVKELMGRLKKFVD------AQPKELDLPPATEIDLSLHALDN-----DSDDFEIVTDPAYPGQFRIKGAYIEQVAIMTHWEYPEAVDRFGR------------ILDAIGISDAMQQVGAQDGDLVMVGEYDFEFA 444
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A7S2CMR3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMR3_9STRA) HSP 1 Score: 166 bits (419), Expect = 9.810e-45 Identity = 107/271 (39.48%), Postives = 145/271 (53.51%), Query Frame = 1
Query: 1 GVCD--PEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGAN-------------RWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALA 756
GVCD P+ KG+VLADIPGLLEGAH GVG+G AFLRHV RC+ +IH+V+GA+ DP+GDF AIN EL LF+ LA VVVLNKID+PEVE RE LE LK GH+R+M+IS+ G++VKELMRRT +L+M + E G N ++ + RL ++ T W+Y A RF + ++ + GV + L E+GAA GD +++G+ + +
Sbjct: 172 GVCDILPQDSEESHKGLVLADIPGLLEGAHDGVGMGLAFLRHVSRCKVLIHVVNGAAEDPIGDFEAINTELRLFNPQLALKPQVVVLNKIDIPEVEAARESLEKELKAAAGHSRVMTISAAAGSNVKELMRRT--------------AKLVMAQPDAPTIYESEPGTERVTLDEGPESQLEHGRNMAFDIHTDPVFPGQFRVSSKRLERLVRMTKWDYSEAALRFER------------ILVATGVNEALSEKGAAKGDTIMIGDMDFEFS 416
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A0M0JLH0_9EUKA (Gtpase obg n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLH0_9EUKA) HSP 1 Score: 167 bits (424), Expect = 1.050e-44 Identity = 103/260 (39.62%), Postives = 144/260 (55.38%), Query Frame = 1
Query: 1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAE---EAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALAE 759
GVC P G V+ADIPGLLEGAH GVGLGRAFLRH+ERCR ++H+V G++PDP+GDF A+ EL LFS LA VVVLNK+D+PEV+ R EL AL++ GH RL+ IS+ L+RR R+ L + + E LL+ E +V +GA W + TR+ + + T+W+Y A DRF + +M +LG ++L+ GA +GD+++VG + + E
Sbjct: 280 GVCQPSLDGSGDDAFVVADIPGLLEGAHDGVGLGRAFLRHIERCRLLVHVVDGSAPDPLGDFEAVRTELELFSPWLAQIPTVVVLNKVDMPEVKARETELLNALQKAAGHNRLLPISAAARDGCDILVRRLRKLLASAKLKGPPPRPTELLLVLDEED---------------KEKECKVVEEGAGVWRLTGTRIEKAAAMTNWDYAEAQDRFQR------------IMGALGASEQLKAAGAKNGDLIMVGNVDFSYFE 512 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8855.20350.1 >prot_Ecto-sp13_S_contig8855.20350.1 ID=prot_Ecto-sp13_S_contig8855.20350.1|Name=mRNA_Ecto-sp13_S_contig8855.20350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIback to top mRNA from alignment at Ecto-sp13_S_contig8855:753..6257+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8855.20350.1 ID=mRNA_Ecto-sp13_S_contig8855.20350.1|Name=mRNA_Ecto-sp13_S_contig8855.20350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8855:753..6257+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8855:753..6257+ >mRNA_Ecto-sp13_S_contig8855.20350.1 ID=mRNA_Ecto-sp13_S_contig8855.20350.1|Name=mRNA_Ecto-sp13_S_contig8855.20350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8855:753..6257+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |