mRNA_Ecto-sp13_S_contig8855.20350.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8855.20350.1
Unique NamemRNA_Ecto-sp13_S_contig8855.20350.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: D7FRG3_ECTSI (PObg2, plastid Obg/CgtA-like GTPase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRG3_ECTSI)

HSP 1 Score: 419 bits (1076), Expect = 4.770e-142
Identity = 236/259 (91.12%), Postives = 236/259 (91.12%), Query Frame = 1
Query:    1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALAVVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALAEPPANSS 777
            GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALAVVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERL M       XXXXXXXXXX VISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLK            VMESLGVLQELREEGA DGDVVLVGEKEIALAEPPAN S
Sbjct:  312 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALAVVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLQMLRQAAMGXXXXXXXXXXEVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLK------------VMESLGVLQELREEGATDGDVVLVGEKEIALAEPPANLS 558          
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A836CHG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG5_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.060e-60
Identity = 148/262 (56.49%), Postives = 172/262 (65.65%), Query Frame = 1
Query:    1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSA----RVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALAEP 762
            GVCDP ALGF G+GMVLADIPGLLEGAH+GVGLG AFLRHVERCR IIH+VSGAS DPVGD+ AINQELALFS  LA    VVVLNKIDLPEVE  +EEL   ++E   HTR+M +S+  G  V ELMRRT + L  +EA+         XXXXXXXXXXXXXXXXXX           RV       W++ D RL ++    DW+YY A +RF+            G+M++LGVL ELR  GA  GD V VG   +AL  P
Sbjct:  423 GVCDPLALGFVGRGMVLADIPGLLEGAHRGVGLGPAFLRHVERCRLIIHVVSGASTDPVGDYVAINQELALFSADLARKPQVVVLNKIDLPEVEAIKEELLERIRERANHTRIMEVSAARGDSVTELMRRTSQLLARLEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERVHRGDDGGWVVTDARLERLGGEMDWDYYAAEERFI------------GLMDALGVLSELRTAGADWGDSVTVGSVTVALRRP 672          
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A7S3XR55_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR55_HETAK)

HSP 1 Score: 190 bits (483), Expect = 5.850e-56
Identity = 115/261 (44.06%), Postives = 154/261 (59.00%), Query Frame = 1
Query:    1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREE-LETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISE-----DSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIAL 753
            GVC+P+ALGF+G+GMVLADIPGLLEGAHKGVGLGR FLRHV+RC+AI+H+V G+S DPVGDF AINQEL LF+  LA    VVV+ K DL EV ++ E  LE  LKE MGH RL++IS+  G +V+ LM RTR+ LD +E    EKERL                     I+         ++       W + + +L  M  + DW+YYG   R ++             + S  +L+ + + GA  GD +L+G+K   +
Sbjct:   48 GVCEPDALGFRGRGMVLADIPGLLEGAHKGVGLGREFLRHVDRCKAILHLVDGSSQDPVGDFTAINQELVLFNPNLAHKPQVVVITKTDLTEVREKIESGLEEDLKEKMGHGRLLAISAVTGDNVRTLMERTRKLLDKIE----EKERLKKVEEHVAETQCADDETDSSDIAPLEGIAGRTKIMQLSVGNWKLSNPQLEYMVDSMDWQYYGTEGRLIE------------FLSSTEILKRIFQAGAKAGDRILIGDKGFCI 292          
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A7S3UWE7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWE7_HETAK)

HSP 1 Score: 176 bits (445), Expect = 1.220e-49
Identity = 106/250 (42.40%), Postives = 151/250 (60.40%), Query Frame = 1
Query:   25 GFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEA---EKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGA--NRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEI 747
            G   KG+VLADIPGLLEGAH G GLG AFLRHV+RC  ++H+V+GAS DP GDF AINQELALF+  L     VVVLNK+DLPEV  R++EL  ALKE   H+R++ IS+  G  VKELM+R ++F+D +  +E     KE +++                   IS+ +  +  D A   ++ I   ++   +  T+W+YY AVDRF +            +M+++GV   L E GA +GD++++G+ + 
Sbjct:  111 GAGNKGLVLADIPGLLEGAHTGRGLGIAFLRHVQRCGVLVHVVNGASEDPAGDFEAINQELALFNPRLKEKPQVVVLNKVDLPEVAARQDELLAALKERCDHSRVLPISAATGKGVKELMQRLKKFVDSLPPQEELFEGKEAVVLDDQILDND-----------ISQAAFEIETDPAYPGQFRITGRKIENAAAMTNWDYYEAVDRFKR------------IMDAMGVTAALEERGAEEGDLIMIGDMDF 337          
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: I2CRT0_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRT0_NANGC)

HSP 1 Score: 165 bits (417), Expect = 7.630e-46
Identity = 102/243 (41.98%), Postives = 149/243 (61.32%), Query Frame = 1
Query:   37 KGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDL--PEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEI 747
            KGMVLADIPGLLEGAH+GVGLG AFLRHV+RCR ++H+V+G SPDPVGD+ AINQELALF+  LA    VVVLNKIDL  PEV   R  +E  LKE + HTR MSIS+ + T+  ELM R  + L  V+ EE +    L+                  +I++           ++ ++  ++ ++   T+W+YY AV+RF +            ++E+ G+ + L++ GA +GD++++G+++ 
Sbjct:   74 KGMVLADIPGLLEGAHQGVGLGLAFLRHVQRCRVLVHVVNGDSPDPVGDYTAINQELALFNPKLAEKPQVVVLNKIDLISPEV---RLRVEQELKEVIPHTRFMSISAMKKTNTGELMHRVWKMLRVVKEEEGD----LLDGEVPVPLDEESYRMSYQIITDPKF------PGQFRVQGKQIEKICAMTNWDYYEAVERFQR------------ILEATGIAKALKKRGAQEGDLIMIGDRDF 291          
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A835YRC8_9STRA (GTP1/OBG-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC8_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.990e-45
Identity = 104/251 (41.43%), Postives = 143/251 (56.97%), Query Frame = 1
Query:    1 GVCDPEA-LGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGE 738
            GV +  A +G   KG+VLADIPGLLEGAH GVGLG AFLRHV+RCR ++H+V+G SPDP+GDF AI QEL LF+  LA    VVVLNK+DLP V +++ E+E  L   M H RLM+IS+ +  H  ELM R  + +  +     E+E L                     I  D A        +W +  TR+ + +  T+W+YY A+ RF +            +M+++GV QEL   GA  GD++++ E
Sbjct:  235 GVWEESAEVGGSPKGLVLADIPGLLEGAHMGVGLGLAFLRHVQRCRVLVHVVNGDSPDPLGDFEAIQQELELFNIKLAGKPQVVVLNKVDLPHVAEKQAEIEAGLLAMMPHKRLMTISAAKRLHTSELMYRVLKLVQSL----PEEEELFNGEDIRTLEPDDDDEDRGFQILSDPAY-----PGQWRVAGTRIERTARMTNWDYYEAIVRFQR------------IMDAMGVNQELLSAGAKKGDLIMIDE 464          
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: D7FW99_ECTSI (PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW99_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 2.970e-45
Identity = 107/253 (42.29%), Postives = 145/253 (57.31%), Query Frame = 1
Query:    1 GVCD---PEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGE 738
            GVCD    EA     KG+VLADIPGLLEGAH+GVGLG AFLRHV+RCR ++H+VSG S DPVGD+RAI QEL LFS  L     VVVL KIDLP V  +++ELE  +K  + HTR MSIS+  G + +ELMRR R+ ++ +   +      L                    I  D +        ++ +   R+ Q++  T+W+YY AV RF +            VME++GV   L++ GA  GD++++ E
Sbjct:  311 GVCDVLGDEAEAGMDKGLVLADIPGLLEGAHEGVGLGLAFLRHVQRCRVLVHLVSGDSVDPVGDYRAIQQELELFSPKLLKKQQVVVLTKIDLPHVRSKQKELENLIKAELDHTRFMSISAVAGENTQELMRRLRKLVNSLPPVDD-----LFDGEAVKMLDSPAAEDTGFSIETDPSY-----PGQFRVHGARIVQIARMTEWDYYEAVQRFQR------------VMEAMGVDAALKKAGAQAGDLIMIDE 541          
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A7S1VVD0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVD0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 7.150e-45
Identity = 101/258 (39.15%), Postives = 152/258 (58.91%), Query Frame = 1
Query:    1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGA--NRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALA 756
            GVCD   LG +G G+V+ DIPGL+EGA  G GLG AFLRHV+RC+ ++H+V G S DP+GDF AIN+ELA + E L+    VVVLNKID+ EV+++++EL   LKE  GH+R+++IS+     VKELM R ++F+D      A+ + L +                      D   +  D A   ++ I+   + Q+++ T WEY  AVDRF +            +++++G+   +++ GA DGD+V+VGE +   A
Sbjct:  213 GVCD---LGDEGAGLVMCDIPGLIEGASSGAGLGPAFLRHVQRCKVLLHVVDGTSEDPIGDFEAINKELAQYDELLSSKPQVVVLNKIDVSEVQEKQDELMAKLKEAAGHSRVLAISAATTERVKELMGRLKKFVD------AQPKELDLPPATEIDLSLHALDN-----DSDDFEIVTDPAYPGQFRIKGAYIEQVAIMTHWEYPEAVDRFGR------------ILDAIGISDAMQQVGAQDGDLVMVGEYDFEFA 444          
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A7S2CMR3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMR3_9STRA)

HSP 1 Score: 166 bits (419), Expect = 9.810e-45
Identity = 107/271 (39.48%), Postives = 145/271 (53.51%), Query Frame = 1
Query:    1 GVCD--PEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGAN-------------RWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALA 756
            GVCD  P+      KG+VLADIPGLLEGAH GVG+G AFLRHV RC+ +IH+V+GA+ DP+GDF AIN EL LF+  LA    VVVLNKID+PEVE  RE LE  LK   GH+R+M+IS+  G++VKELMRRT               +L+M                   + E        G N             ++ +   RL ++   T W+Y  A  RF +            ++ + GV + L E+GAA GD +++G+ +   +
Sbjct:  172 GVCDILPQDSEESHKGLVLADIPGLLEGAHDGVGMGLAFLRHVSRCKVLIHVVNGAAEDPIGDFEAINTELRLFNPQLALKPQVVVLNKIDIPEVEAARESLEKELKAAAGHSRVMTISAAAGSNVKELMRRT--------------AKLVMAQPDAPTIYESEPGTERVTLDEGPESQLEHGRNMAFDIHTDPVFPGQFRVSSKRLERLVRMTKWDYSEAALRFER------------ILVATGVNEALSEKGAAKGDTIMIGDMDFEFS 416          
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Match: A0A0M0JLH0_9EUKA (Gtpase obg n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLH0_9EUKA)

HSP 1 Score: 167 bits (424), Expect = 1.050e-44
Identity = 103/260 (39.62%), Postives = 144/260 (55.38%), Query Frame = 1
Query:    1 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAE---EAEKERLLMXXXXXXXXXXXXXXXXXXVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYYGAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIALAE 759
            GVC P   G      V+ADIPGLLEGAH GVGLGRAFLRH+ERCR ++H+V G++PDP+GDF A+  EL LFS  LA    VVVLNK+D+PEV+ R  EL  AL++  GH RL+ IS+        L+RR R+ L   + +       E LL+                     E   +V  +GA  W +  TR+ + +  T+W+Y  A DRF +            +M +LG  ++L+  GA +GD+++VG  + +  E
Sbjct:  280 GVCQPSLDGSGDDAFVVADIPGLLEGAHDGVGLGRAFLRHIERCRLLVHVVDGSAPDPLGDFEAVRTELELFSPWLAQIPTVVVLNKVDMPEVKARETELLNALQKAAGHNRLLPISAAARDGCDILVRRLRKLLASAKLKGPPPRPTELLLVLDEED---------------KEKECKVVEEGAGVWRLTGTRIEKAAAMTNWDYAEAQDRFQR------------IMGALGASEQLKAAGAKNGDLIMVGNVDFSYFE 512          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8855.20350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRG3_ECTSI4.770e-14291.12PObg2, plastid Obg/CgtA-like GTPase 2 n=2 Tax=Ecto... [more]
A0A836CHG5_9STRA1.060e-6056.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XR55_HETAK5.850e-5644.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UWE7_HETAK1.220e-4942.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
I2CRT0_NANGC7.630e-4641.98Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A835YRC8_9STRA1.990e-4541.43GTP1/OBG-domain-containing protein n=1 Tax=Tribone... [more]
D7FW99_ECTSI2.970e-4542.29PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ecto... [more]
A0A7S1VVD0_9STRA7.150e-4539.15Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2CMR3_9STRA9.810e-4539.48Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0M0JLH0_9EUKA1.050e-4439.62Gtpase obg n=1 Tax=Chrysochromulina tobinii TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8855contigEcto-sp13_S_contig8855:753..6257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score426.4
Seed ortholog evalue9.6e-117
Seed eggNOG ortholog2880.D7FRG3
Model size780
KEGG koko:K03979
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009668,GO:0009706,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010027,GO:0010154,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019866,GO:0022414,GO:0022613,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042170,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061024,GO:0061458,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Exons6
EggNOG free text desc.GTP-binding protein
EggNOG OGsCOG0536@1,KOG1489@2759
Ec32 ortholog descriptionGTP1/OBG domain
Ec32 orthologEc-08_000830.1
Cds size780
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8855.20350.1prot_Ecto-sp13_S_contig8855.20350.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8855 753..6257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464157.7946234-CDS-Ecto-sp13_S_contig8855:752..8801681464157.7946234-CDS-Ecto-sp13_S_contig8855:752..880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8855 753..880 +
1681464157.8113716-CDS-Ecto-sp13_S_contig8855:2320..24231681464157.8113716-CDS-Ecto-sp13_S_contig8855:2320..2423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8855 2321..2423 +
1681464157.8209682-CDS-Ecto-sp13_S_contig8855:3081..31731681464157.8209682-CDS-Ecto-sp13_S_contig8855:3081..3173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8855 3082..3173 +
1681464157.8303092-CDS-Ecto-sp13_S_contig8855:4224..43911681464157.8303092-CDS-Ecto-sp13_S_contig8855:4224..4391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8855 4225..4391 +
1681464157.8394997-CDS-Ecto-sp13_S_contig8855:5120..52901681464157.8394997-CDS-Ecto-sp13_S_contig8855:5120..5290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8855 5121..5290 +
1681464157.848427-CDS-Ecto-sp13_S_contig8855:6137..62571681464157.848427-CDS-Ecto-sp13_S_contig8855:6137..6257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8855 6138..6257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8855.20350.1

>prot_Ecto-sp13_S_contig8855.20350.1 ID=prot_Ecto-sp13_S_contig8855.20350.1|Name=mRNA_Ecto-sp13_S_contig8855.20350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVERCRAIIHI
VSGASPDPVGDFRAINQELALFSEALAVVVLNKIDLPEVEDRREELETAL
KEHMGHTRLMSISSGEGTHVKELMRRTRRFLDGVEAEEAEKERLLMLQKA
AMGGGGGSDAEEEEVISEDSARVFADGANRWLIRDTRLAQMSLNTDWEYY
GAVDRFLKARPAAAGFAACGVMESLGVLQELREEGAADGDVVLVGEKEIA
LAEPPANSS*
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mRNA from alignment at Ecto-sp13_S_contig8855:753..6257+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8855.20350.1 ID=mRNA_Ecto-sp13_S_contig8855.20350.1|Name=mRNA_Ecto-sp13_S_contig8855.20350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8855:753..6257+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTGTGCGATCCGGAGGCGTTGGGGTTTAAGGGCAAGGGGATGGTTCT CGCCGACATCCCCGGGCTGCTGGAGGGCGCCCACAAGGGTGTAGGCTTGG GGCGCGCGTTCTTGCGTCACGTTGAGAGGTGAACAACTGGATTAACCTTT GGCTTGTACTTCGAAGGGTGGGGGGTGAGGACCTAGATGGCAGTAGTCGA CTTGAATCAACACATGCATTGGAGGATGCTGCGAGTGTGAGATTCGGTGG GGACGATTGGTTGAGAGGTGAACGACTTGCGGCTGAAGTTTGGGTTGCAT CAACACAATGCGAAGGGTGAAAAGTGAAGACCTGGATGGCAGTAGTTGGC TTGCCCATGAATTGAGGATGCTGCGAGTGTGAGATTCGGTGGGGGTGATT GGATGAGAGGGGAACAACTGGCGGCTGAAGTTTGGGTTGCATCAACACAA TGCGAAGGGTGAGAGGTGAAGACCTGGATGGCAGTAGTTGACTTGCACAC ACATGTGAATTGGAGGATGCTGCGAGTGTGAGATTCGGTGGGGACGATTG GTTGTGAGGCCGACGACTGGATGAAGTTTTTAGCTTGTGTCAACACAATC CGAACGTTGGGAGGTGAACGACTGGATGAAGTTTTTAGCTTGTATCAACA CAATCCGAACGTTGAGAGGTGAACAACTGGATGAACTTGGCTTGCATCAA CACGTATATTAGAGGATTCTGCGAGTGTGAGATTCAGCGGCGATGAATGG TTGCGTGTGGCGCTGGCATGAGACAATCGTCTTGCCGCAGCCTCTGAGCG CGGAGTCGCCGTCAACCTGCTACACTACCGAACTCGCCATGATTCTTTGC TCGACTGTCGTGAGTACATATGCCGCCACCCACGGCATGTGTACCTCTAG TGTACCACGATACGGCACGGAGGGATGTGTTTTTCTTGGATTAGCATCGA CCACGCTAATCGGCTGAAAAGGCGGCAGCCTTATGGCGGGATAAAAAAAG GCTCTCCAAACATATGGTTCTACCCTGCAGACGGAGCGCACGTTGTATAT GTGTGGGTGTCATCTCCGTTGTTTGGACGATGTCGGTTACACCTTTTCGA CACTACACCGTAAATGTCGGCGAGATGGCACCCAAGGGTAAGCATTTTTT TTTAGCGTTTTCCTCCATAACCACGGGAGCTTCACTGCCGAAAATGAAGT TTTCGAAACATCTCGTCGAGGTATTTCATGAGCGGTATCGGTTGGTGTTC GCACCCTCCTGGTTGTGGAGAAATACGACATATCAATACGCTAACACGGG GTTCATCTCTCCGACTCCTACGGTCTGTTGTTTGGACGTACCAACACCAA AGACAGATCGCACCACCGTAAAACTGCGGGTTGGGACATGTGCTTCCCGC TTCTCCACCCCTCTGACTTCCTCTTCGTGAACCACCACGTCATTCAGATT GTGGGGTTTTACCCACCAAGATTTCCGTTTTCTCAACCCCCACGACTTAC TCTTTATGAATCACCGCGTAAATGCGTTCTGGGTGGGGTTTCAACAAACC AATGGCGTTACGCAACAGGTGTCGCGCCATCATCCACATCGTGAGCGGAG CTTCGCCGGACCCCGTGGGAGACTTCCGAGCGATCAATCAGGAGCTGGCG CTGTTTTCCGAGGCATTAGCCGTGAAACCACAGGTAAAGGTTAAGGTTGT GGCAGAATCTGGTGCGTACGGTCGTCAGCTAGTTTTTTCGGACACGGGCT TGTCACTGTGATGACTTATTCTTAGTTTGTTGTTTCATCGAGGTGCTGGA GACGACCCATCTTTACAGCGATTTCGGCTTTGGGCTCGGGGTGTTCCATT TGGTATGTAGCGGTACGGTTTTTTCTCGTTATATCTGGTTTTGTGCAATA GCCGTGTGTCTGAGAACTTGTGATGCCAGCCCATGTTTGATCCTTGATTT TCCATAGGTATGGCTCACGTGTTGGTGGAGACCTGTCTATCCTGGACCAT TCCCACTGAACTGCCTGTCTTTGTTCTTTTGCCTTGTTTCTGCGTACCTG TCAGCAGCCTCTGTTTCTTTTTTTTCATATGGCCCAGGCGTCTTGGTGTG AAACCTGGTTTCCGTAATCGTCTCTGTTTGTCCGCCTTTCTTTCGTTTTC GTGCGAAAACAAAGCAAATATTCGTCCCTTTCCACGCATCAGAGCCCAGG ATAATTAAATAGTAATTTGTTCCTTTCAGGTAGAGTTTCTGACTCACCCG TGCCATTGTGTTATCTCTGAGCAGCGTAGAGTGATGTTTGTTCGTTTCTG TTTTTGTTATTTTGTCGTTGCTGTTGCAGGTTGTTGTGCTGAACAAGATC GATCTTCCGGAGGTTGAAGACCGTCGGGAGGAGCTGGAGACCGCCCTCAA GGAGCACATGGGACACACCAGGTACAGCAACTGTCTTCCCTTCCCCAACG ATGTGCCGTCGTGGTGGACGTCGTGTCGGGCGTTGTCAACACTGCTGTGG TCACTTGAGAAGGAAGGATGATGTAGGCGTCCGATCGTAGGTCTCCTTAC CGACCAGGAGATAGGTCCCCCCCTTGGAACTCACCCTGGTATCACTCATT TCTGTTGTAGATCACAGAGGCATCAGGACCAGCAGGCAACAACTATTTTC ACGTGAATTCCAGTGTCTAGATGTTCCTAGCGTTGGCAGAACGCCTGAGC TGGCAACGCCAGCAACATCTGTACGCTGGAGTTGATGTAGCAATTGTTGC TGCTTGTCGTACCTGATGCCCCTGCCATTGAGGGTTAAGGTGAGCTTTAG TGTTGAGATCAGTGGGGGATCAGGAACAGCAACAACTAGTATTTCACGTG AACTCCAGCGTCGAAATGTCGCTAAGGTTGGCAGAACGCCTGATCTGGCA ACGCCAGCAGCAACTGTATTGCTGGAGCTAAACGTAGCAATGTTCGTTGC TGCTGTGCCTGATGCACCTGTGATTGACAACGAAACCCTGTTGTGCTTTG CCCCCGTAGCGCGTGTGTTGTTGATAGTTTCGTGCGATCTGCGCGCTTGC TACTGAATCACGTTCAGGCCCACCCCGCGCAGACGAATGGAGCCGCGTCA GGCAGCACCGTGGACCGATTTTCAGAATTCGATTACGACGGTGCCAATAG TTGCTGCGTTGGAACCGTCTCCTCGAGAGCTTCCCGAAACCGTATCAGTT TGTTTTGGCATCCTCTTCGTCGTGGGGGTAGTTGAGCTTTGGAAATCGGC TCAGGGGGTTTGGTATCTTACGCAACCTACGGGTGGCGTGTTTGTCGTGG GAATCACGGAAGCATGCGCAGGATTGAACCGTGGCAGGGCACGAGAGAAT CGACATCATTTCAAAGGTCCAGCGTTGCCCTCTCGCGTACTCAGCGATCT CTGCGAAGAAGTACGAGATATGTGAGACGACTCCTATCGTTGCCCATGGA ACGCACATCACGCCTCACTCAGGTTGATGTCTATTAGCTCCGGGGAGGGA ACACACGTCAAGGAGTTGATGAGGCGAACGAGGCGTTTCTTAGACGGAGT AGAGGCGGAGGAGGCCGAAAAGGAGCGGTTACTGATGCTGCAGAAGGCGG CGATGGGAGGAGGGGGCGGGAGCGACGCAGAGGAGGAAGGTGAGGGCGGT GGAGAGAGCTGGGGGCTCCGAGGCTGCCTCGTTTTGTGGTTGAGCGGTGC TTCTTGCCGCTGTGGCGACTGCGTTTGATTTCCTCTGAGGGCGTGAGTTG TTTCCTTGTGAAACGAAGTCCTGGAGATAAATAAAGGCTTGACGTTTGTT GCACGGAGTTGGAAGGAATGCGGGGACCATTTTTTCCGTTTTTCTTCGTC AAATTGGATTGTTGTTTCTTCTTATGATACGATGTTTCCTCTTTGGGCGA AGAGCTCGGTCAAACAGGATACCCCCTCGGCGTCGGAAGACGCTAATATG CCACAATCAAGAGTGGCGAAAATCATAGGTTCTTGCGGATATGCTAGTCG GTGCTGGGTATGGGTGCAGACAACTCAGAGATGCAAGGAAACAAAGAGAA TAAACAGAACACTATTTCTCCTATCCTGGTTGAAACTTGGCACCAAGCTC ATGGCTAAAGCAACTCACGCGGCAGTTAATGGAGCCTTTGGAACTGACCG CCGCTGGTATGTGTACCCCTCACTCCCTCCCCCGTGATAGGATAGATAGG TAGGGACATTTTTTAGCCACCTTTGGCAAAGTAGGAAGGGACGATTGGCC ATCGGTGATCGATCCTGTCGGAGCAATGGTTCGTCCTCTCGAGGACGCGT GGTCTTAACCGCTAAGGCATGTATAACATGAGTACTCCCCCCCCCCCTGT GCCTGTGTGTTTGCTCAGAAGTTATCTCGGAAGACTCGGCAAGAGTATTC GCGGATGGCGCCAACCGCTGGCTGATTCGCGATACCAGGCTGGCGCAGAT GTCACTCAACACCGATTGGGAATACTACGGGGCCGTCGACCGCTTCTTGA AGGCGAGACCTGCTGCTGCTGGGTTTGCCGCGTGTGGTGTAGGGATCTGA CCTGCCCTCTGTGTGAAAGTCTTCGAAAGCATACAATGGGCTGGCCTCGC GCCGCTGGAGTATGTCTTTTATCTCGTCTGCGATTTTCCTGGACCTCGTC TGTATGTAGCCAAAATCTACTCCAGTTGACTACAACCTCTTCCTGTTGCC CGATATAGTCTAGGCTCTCGTAGCCTGCATCACTTTCCTGTGATCGACCG AGTCTCTTCCCCTCTAGCCCTATCTCTGCATGTCCGTCCCATCTACCGCC CGTCTGCACGCTTTTCGCCGCATATCTTTGAGGTATCAGCCCCGACCACA CAACCGGAAGGTCACCCGGGAGTTTTTTTTTGTTCCGTTTATTTTTGTGC CCCACCCTTCCTTCTGCAGTCCTCTCCATGGCGAGCAATATTCTCGCGTG TCCCGATAACAAGAGACGACGATCCAGACCAGTCCGACGTTAGGCAGTTG GTCACCCCAAGGCTGCTGTTGAGTTTTTTGTTTGACCGACGTAACGGGCG CGGGAGCAGTACGCGGCTCGCGCATCTCGTCTGCGATGTCCAATATCGGC ACGGCAGCATCAACCGGCGTGCACTCGTGACGGCTGCCTTCGTGTCTTCC ATTTTTAATGTTTTTTAGGATATCATGAACGAATCCATCTCTATCCACAG CAAGCGTCCAGGACCAATAAGCAATGAAGCAACAAATCCATCTCAATCCA CAGGCCAAAGTCCAGGACCAACTAGCAATATGCAGCGGATCCATCAATAA GCAGCGAATCCATCTCAATCCACTGACGAGAATGCAGGATTAATTGGCAC TGAAACCATTCTATTGTTTATTTTTTTCCGGGCAGGTGATGGAGTCACTC GGTGTGCTGCAGGAGCTCCGAGAGGAAGGCGCCGCGGACGGGGATGTGGT ACTGGTGGGGGAAAAGGAAATCGCTCTTGCGGAGCCCCCCGCCAACTCGA GCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8855:753..6257+

>mRNA_Ecto-sp13_S_contig8855.20350.1 ID=mRNA_Ecto-sp13_S_contig8855.20350.1|Name=mRNA_Ecto-sp13_S_contig8855.20350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8855:753..6257+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTGTGCGATCCGGAGGCGTTGGGGTTTAAGGGCAAGGGGATGGTTCT
CGCCGACATCCCCGGGCTGCTGGAGGGCGCCCACAAGGGTGTAGGCTTGG
GGCGCGCGTTCTTGCGTCACGTTGAGAGGTGTCGCGCCATCATCCACATC
GTGAGCGGAGCTTCGCCGGACCCCGTGGGAGACTTCCGAGCGATCAATCA
GGAGCTGGCGCTGTTTTCCGAGGCATTAGCCGTTGTTGTGCTGAACAAGA
TCGATCTTCCGGAGGTTGAAGACCGTCGGGAGGAGCTGGAGACCGCCCTC
AAGGAGCACATGGGACACACCAGGTTGATGTCTATTAGCTCCGGGGAGGG
AACACACGTCAAGGAGTTGATGAGGCGAACGAGGCGTTTCTTAGACGGAG
TAGAGGCGGAGGAGGCCGAAAAGGAGCGGTTACTGATGCTGCAGAAGGCG
GCGATGGGAGGAGGGGGCGGGAGCGACGCAGAGGAGGAAGAAGTTATCTC
GGAAGACTCGGCAAGAGTATTCGCGGATGGCGCCAACCGCTGGCTGATTC
GCGATACCAGGCTGGCGCAGATGTCACTCAACACCGATTGGGAATACTAC
GGGGCCGTCGACCGCTTCTTGAAGGCGAGACCTGCTGCTGCTGGGTTTGC
CGCGTGTGGTGTGATGGAGTCACTCGGTGTGCTGCAGGAGCTCCGAGAGG
AAGGCGCCGCGGACGGGGATGTGGTACTGGTGGGGGAAAAGGAAATCGCT
CTTGCGGAGCCCCCCGCCAACTCGAGCTGA
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