mRNA_Ecto-sp13_S_contig88541.20349.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88541.20349.1
Unique NamemRNA_Ecto-sp13_S_contig88541.20349.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig88541.20349.1 vs. uniprot
Match: A0A6H5JWE1_9PHAE (B30.2/SPRY domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWE1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.290e-46
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 3 
Query:    3 TMEVATPLDLPFNVLEKLPLSTEMFPGTDPVAPAEIWARTALLLYVNDLVLPLLPLISTTQGGRGPLGTLIHKFRHLIFKTTKLELLD 266
            TM V TPLDLPFNVL KLP ST+MFPGTDPVAPAEIWARTALLLYVNDLVLPLLPLISTTQGGRGPLGTLIHKFRHLIFKTTKLELLD
Sbjct: 1711 TMGVVTPLDLPFNVLGKLPSSTKMFPGTDPVAPAEIWARTALLLYVNDLVLPLLPLISTTQGGRGPLGTLIHKFRHLIFKTTKLELLD 1798
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88541.20349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWE1_9PHAE1.290e-4694.32B30.2/SPRY domain-containing protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88541contigEcto-sp13_S_contig88541:55..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score165.6
Seed ortholog evalue1e-38
Seed eggNOG ortholog2880.D7G597
Model size272
KEGG koko:K12169
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.RNA localization to chromatin
EggNOG OGsCOG5184@1,KOG1426@2759,KOG2242@1,KOG2242@2759
EC2.3.2.27
Cds size267
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464157.7349408-UTR-Ecto-sp13_S_contig88541:54..591681464157.7349408-UTR-Ecto-sp13_S_contig88541:54..59Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig88541 55..59 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464157.7500038-CDS-Ecto-sp13_S_contig88541:59..3261681464157.7500038-CDS-Ecto-sp13_S_contig88541:59..326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88541 60..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88541.20349.1prot_Ecto-sp13_S_contig88541.20349.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88541 60..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88541.20349.1

>prot_Ecto-sp13_S_contig88541.20349.1 ID=prot_Ecto-sp13_S_contig88541.20349.1|Name=mRNA_Ecto-sp13_S_contig88541.20349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MEVATPLDLPFNVLEKLPLSTEMFPGTDPVAPAEIWARTALLLYVNDLVL
PLLPLISTTQGGRGPLGTLIHKFRHLIFKTTKLELLDK*
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mRNA from alignment at Ecto-sp13_S_contig88541:55..326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88541.20349.1 ID=mRNA_Ecto-sp13_S_contig88541.20349.1|Name=mRNA_Ecto-sp13_S_contig88541.20349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88541:55..326+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACGATGGAAGTTGCGACTCCGCTGGACCTGCCCTTTAACGTCCTCGAA
AAGCTACCGTTATCGACAGAAATGTTTCCTGGCACGGATCCAGTAGCCCC
CGCTGAAATTTGGGCGCGGACGGCCCTCTTGCTGTACGTAAACGACCTGG
TTTTGCCTCTCCTGCCCCTCATAAGCACTACGCAAGGTGGCCGTGGGCCA
CTTGGTACGTTGATACACAAGTTCAGGCACCTCATTTTCAAAACAACCAA
GCTGGAACTTCTGGACAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88541:55..326+

>mRNA_Ecto-sp13_S_contig88541.20349.1 ID=mRNA_Ecto-sp13_S_contig88541.20349.1|Name=mRNA_Ecto-sp13_S_contig88541.20349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88541:55..326+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGTTGCGACTCCGCTGGACCTGCCCTTTAACGTCCTCGAAAAGCT
ACCGTTATCGACAGAAATGTTTCCTGGCACGGATCCAGTAGCCCCCGCTG
AAATTTGGGCGCGGACGGCCCTCTTGCTGTACGTAAACGACCTGGTTTTG
CCTCTCCTGCCCCTCATAAGCACTACGCAAGGTGGCCGTGGGCCACTTGG
TACGTTGATACACAAGTTCAGGCACCTCATTTTCAAAACAACCAAGCTGG
AACTTCTGGACAAGTGA
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