mRNA_Ecto-sp13_S_contig8854.20348.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8854.20348.1
Unique NamemRNA_Ecto-sp13_S_contig8854.20348.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: D7G6H3_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H3_ECTSI)

HSP 1 Score: 797 bits (2058), Expect = 8.850e-288
Identity = 437/510 (85.69%), Postives = 458/510 (89.80%), Query Frame = 1 
Query:    1 MTSRGLNTAAGAAISARYMTIIMSIAVLRDVVAWRNGACLQRLRGKWSCTAVHTVSSPPVSRQIRGHRRLRALPGSLSPHRDSGCQSAKDHPTTSRRRRCRLRSGSTVHDWPLSPQRSPSSSADFVDRDEQEPVTAVASVGALRNGGSGETTTRRAGNTVGYAHQTHGGSNRCRRKXXXXXXXXLRLQTLGDMEVGAAEALSAMEATIVEAESLGLETAIRPSTGVGAAVAPSIVDSKANVANRERCQRQQQLLQVDGVVSAEEIATRDDVDTDLSRSGGEDVSCSGSGSFSEERSSTSTRTRPLATGGLEGSQLMAEQVETLLQGGHSEAVQDNYASEVPKYSEEDDDRFMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRGGEIASAG 1530
            MTSRGLN AAGAA+SAR +T+I+SIAVLRDVVAWRNGACLQRLRG            PPVS QIR HRR + L GSLSPHRDSG QSAK HPTTSRRRR RLRSGSTVHDWPLSPQRSP S+ D  DR+E EPVTAVASVGALRNG S ET   RA +TVG AHQT GGSNRCRRK XXXXXXX RLQTLGD+EV AAE LSAME +IVEAESLGLETAIRPSTGVGAAVAP +VD++ANVANRER QRQQQLLQVDGVVS +EIATRDD DTDLSRSGG+DVSCSGSG FSEERSSTSTR RPLATGGLE SQLMAEQ ETLLQGGHS+AVQ+N+ASEVPKYSEEDDDRFMR+ALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCL+ AAKARSNWRLAGTTL+VTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRR GEI S G
Sbjct:    1 MTSRGLNAAAGAAVSARCITLIVSIAVLRDVVAWRNGACLQRLRG------------PPVSGQIRAHRRSKGLSGSLSPHRDSGRQSAKHHPTTSRRRRGRLRSGSTVHDWPLSPQRSPPSTPDVADREEHEPVTAVASVGALRNGTSAETMNHRAADTVGLAHQTQGGSNRCRRKRXXXXXXX-RLQTLGDIEVEAAEGLSAMEPSIVEAESLGLETAIRPSTGVGAAVAPGVVDNEANVANRERRQRQQQLLQVDGVVSTDEIATRDDADTDLSRSGGKDVSCSGSGFFSEERSSTSTRARPLATGGLESSQLMAEQAETLLQGGHSKAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIVSVG 497
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BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: A0A6H5L744_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L744_9PHAE)

HSP 1 Score: 748 bits (1932), Expect = 4.700e-269
Identity = 404/455 (88.79%), Postives = 422/455 (92.75%), Query Frame = 1 
Query:  166 SSPPVSRQIRGHRRLRALPGSLSPHRDSGCQSAKDHPTTSRRRRCRLRSGSTVHDWPLSPQRSPSSSADFVDRDEQEPVTAVASVGALRNGGSGETTTRRAGNTVGYAHQTHGGSNRCRRKXXXXXXXXLRLQTLGDMEVGAAEALSAMEATIVEAESLGLETAIRPSTGVGAAVAPSIVDSKANVANRERCQRQQQLLQVDGVVSAEEIATRDDVDTDLSRSGGEDVSCSGSGSFSEERSSTSTRTRPLATGGLEGSQLMAEQVETLLQGGHSEAVQDNYASEVPKYSEEDDDRFMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRGGEIASAG 1530
            +SPPVSRQIR HRR RALPGSLSPHRDSGC SAKDHPTTSRRRRCRLRSGSTVHDWPL PQRS SS+ADFVDR+EQEPVTAVASVGALRNG SGET   R G+T G+AHQT GGSNRCRRK XXXXXX LRLQTLG++EVGAAEAL AMEA IVEAESLGLE AIRPSTGVGAAVAPSIVD++ANVANRER +RQQQLLQVDGVVS +EIATRDDVD DL RSGG+DVSCSGSGSFSEERSSTST TRP ATGGLE SQLMAEQ ETLLQG H+ AVQ+N+ASEVPKYSEEDDDRFMR+ALRLAGRARMEGEVPIGAILAET  TRRDGRRRVLSTGRNEVEGRRDASAHAEMLCL+ AAKAR NWRLAGTTL+VTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRR  EIASAG
Sbjct:   16 ASPPVSRQIRAHRRSRALPGSLSPHRDSGCHSAKDHPTTSRRRRCRLRSGSTVHDWPLPPQRSQSSTADFVDREEQEPVTAVASVGALRNGRSGETMNHRGGDTAGFAHQTQGGSNRCRRKRXXXXXX-LRLQTLGNIEVGAAEALVAMEANIVEAESLGLEAAIRPSTGVGAAVAPSIVDNEANVANRERRKRQQQLLQVDGVVSTDEIATRDDVDADLYRSGGKDVSCSGSGSFSEERSSTSTGTRPSATGGLEASQLMAEQAETLLQGRHTNAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETATTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARGNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREEEIASAG 469
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BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: A0A7S3Y7A9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7A9_HETAK)

HSP 1 Score: 160 bits (405), Expect = 2.430e-43
Identity = 84/161 (52.17%), Postives = 107/161 (66.46%), Query Frame = 1 
Query: 1033 EEDDDRFMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRGGE 1515
            EE+D RFMR+ALR A  A    EVP+GAI+        D    V++ GRN VE  +DA+ HAE+ CL+ A+K   NWRL   TL+ T+EPC MCL+A Q FRV RVV+GA +  LGACG ++DL + RH FH+L+V GGVLAEE +  L+ FFR RR   E
Sbjct:    8 EEEDARFMRLALRHADWALRAREVPVGAIIV-------DKNGEVVAAGRNSVEKNKDATCHAEINCLKTASKVLDNWRLLDCTLYCTLEPCVMCLAAIQNFRVRRVVYGARDHRLGACGTYLDLPAHRHPFHQLQVTGGVLAEESSDLLKQFFRERRTKNE 161
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BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: A0A7S2TMM0_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TMM0_9EUKA)

HSP 1 Score: 157 bits (397), Expect = 1.360e-40
Identity = 87/163 (53.37%), Postives = 105/163 (64.42%), Query Frame = 1 
Query: 1030 SEEDDDRFMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELE-VKGGVLAEECALPLRGFFRSRRRGGE 1515
            +EE D  +MR AL LA  A   GEVPIGA+L +      D    V+++  N VE  +DA+AHAEMLC+R A++ R NWRL  TTL+ T+EPC MC+SA  L RVDRVV+G  N  LGACG W+DL S  H FH    V GGVL EE A  L  FFRSRR+  E
Sbjct:   47 AEERDLVYMRRALELARDAAEIGEVPIGAVLVD------DATGEVIASQHNCVETTKDATAHAEMLCIREASRERGNWRLGSTTLYCTLEPCPMCISALALARVDRVVYGETNDRLGACGTWMDLPSTCHPFHTFSRVDGGVLREESAKLLISFFRSRRQAAE 203
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BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: A0A482SHW6_9ARCH (Nucleoside deaminase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHW6_9ARCH)

HSP 1 Score: 150 bits (379), Expect = 1.940e-39
Identity = 73/157 (46.50%), Postives = 105/157 (66.88%), Query Frame = 1 
Query: 1039 DDDRFMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRG 1509
            +D+RFM++A+R A  A  E EVP+GA++        D +  V++  RN VE   DA+AHAE+ C+R AA  + NWRL   TL+ T+EPC  CLSAAQ FR+ R+V+ A +  LGACG  ++L+   H +H++E++GGVL EE ++ LR FF+S R G
Sbjct:    5 EDERFMKLAIRHAQHAYREKEVPVGAVIV-------DDQGEVIAASRNRVEATHDATAHAEVDCMRKAALFKQNWRLLDCTLYTTLEPCPTCLSAAQSFRIKRLVYAAKDLRLGACGSHINLADAIHPYHQVEIEGGVLEEEASILLRRFFQSVREG 154
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BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: A0A2V3J170_9FLOR (tRNA-specific adenosine deaminase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J170_9FLOR)

HSP 1 Score: 149 bits (376), Expect = 1.360e-38
Identity = 79/153 (51.63%), Postives = 98/153 (64.05%), Query Frame = 1 
Query: 1051 FMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHEL-EVKGGVLAEECALPLRGFFRSRRR 1506
            +M  AL  A RA +  EVPIGA+L        D    +++ G N VE   D + HAEM+C++ A   R  WRL GT L+ TVEPCAMC+SA  L R+ RVVFGA +  LGACG WVDL +++H FH L EV GGVLAE+ A  LR FF+ RRR
Sbjct:   43 YMHAALEQAHRAFIANEVPIGAVLV-------DASGNIIAEGHNAVERTTDCTQHAEMVCIQQAMSQRRAWRLNGTILYSTVEPCAMCISAITLARIRRVVFGARDLRLGACGTWVDLVNEKHPFHTLDEVVGGVLAEQSAALLRSFFQERRR 188
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BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: A0A6M2AAF0_9BACT (tRNA-specific adenosine deaminase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M2AAF0_9BACT)

HSP 1 Score: 147 bits (370), Expect = 2.160e-38
Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = 1 
Query: 1039 DDDRFMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRR 1506
            DD  FMR AL+ A +A  E EVP+GA+L +          RV++ G N+VE  +DA+AHAEMLC+   A+A  NWRL G+TL+ T+EPC MC  A  L RV R+V+GAP+   GA G WVDL +  H  H L +  GVLA+EC   ++ FFR RR+
Sbjct:    5 DDTWFMRQALKEAEKAFREEEVPVGAVLVKMG--------RVIARGHNQVELLKDATAHAEMLCIGSGAQALENWRLLGSTLYCTIEPCPMCAGALLLSRVKRLVWGAPDIRHGANGSWVDLFANPHPTHTLSITSGVLADECGAIIQEFFRKRRK 152
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BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: D6YV96_WADCW (tRNA-specific adenosine deaminase n=2 Tax=Waddlia chondrophila TaxID=71667 RepID=D6YV96_WADCW)

HSP 1 Score: 147 bits (372), Expect = 2.240e-38
Identity = 73/155 (47.10%), Postives = 106/155 (68.39%), Query Frame = 1 
Query: 1039 DDDRFMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRR 1503
            +D+ +M  AL+ A +A ++GEVP+GAIL +      +G+  V++ G N+VE  RDA+AHAEMLC+ VA  A  NWRL G TL+ T+EPC+MC  A  L RV  +V+GAP+   GA G WV+L  + H  HE++V+ G+LA+ CA+ ++ FF+ RR
Sbjct:   18 EDETYMLAALKEAWKAFVKGEVPVGAILVK------EGK--VIARGHNQVEMLRDATAHAEMLCITVAEAAEDNWRLNGATLYCTIEPCSMCAGAMLLSRVSTLVWGAPDIRHGANGSWVNLFGKPHPTHEIQVRNGILADFCAMLMQDFFKKRR 164
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BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: A0A0G4GWR4_VITBC (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWR4_VITBC)

HSP 1 Score: 147 bits (371), Expect = 5.320e-38
Identity = 73/155 (47.10%), Postives = 100/155 (64.52%), Query Frame = 1 
Query: 1042 DDRFMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQ-RHAFHELEVKGGVLAEECALPLRGFFRSRR 1503
            D+R+MR+AL+ A  A   GEVPIGA+L        DG+  VLS GRN VE   DA+AHAE+ C+R A++    WRL   TL+ T+EPC MC+ A QL R+  +V+GA +  +G  G WV L+++ +H FH++ V+GGV+A E    LR FFR  R
Sbjct:   24 DERYMRLALQQAAMAAERGEVPIGAVLV-------DGQGEVLSVGRNGVEAAHDATAHAELQCIREASQILGTWRLLNCTLYTTLEPCPMCVGAMQLARIHTLVYGASDNRMGGAGSWVSLATEPKHPFHQMAVRGGVMATEARQLLRTFFREAR 171
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Match: A0A1M3BDS4_9CHLA (tRNA-specific adenosine deaminase n=1 Tax=Chlamydia sp. 32-24 TaxID=1895742 RepID=A0A1M3BDS4_9CHLA)

HSP 1 Score: 146 bits (368), Expect = 6.430e-38
Identity = 77/166 (46.39%), Postives = 107/166 (64.46%), Query Frame = 1 
Query: 1006 YASEVPKYSEEDDDRFMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRR 1503
            +A+ VP+   ++D+ FM  AL+ A +A  E EVP+GA+L +          +V++ G N+VE   DA+AHAEMLCL  A  A +NWRL  TTL++T+EPCAMC  A  L RV R+V+GAP+   GA G WVDL  ++H  H++E+K GVL    A  L+ FF+ RR
Sbjct:    7 FATTVPQ---DEDEHFMLEALKQAWKAYQENEVPVGAVLVQNG--------QVIARGYNQVEKLIDATAHAEMLCLTSAESALNNWRLLETTLYITIEPCAMCAGAILLTRVSRLVWGAPDIRHGANGSWVDLFEKKHPTHQIEIKKGVLENYAAALLKEFFQKRR 161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8854.20348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6H3_ECTSI8.850e-28885.69CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A6H5L744_9PHAE4.700e-26988.79CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S3Y7A9_HETAK2.430e-4352.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2TMM0_9EUKA1.360e-4053.37Hypothetical protein n=2 Tax=Lotharella oceanica T... [more]
A0A482SHW6_9ARCH1.940e-3946.50Nucleoside deaminase n=1 Tax=archaeon TaxID=190666... [more]
A0A2V3J170_9FLOR1.360e-3851.63tRNA-specific adenosine deaminase n=1 Tax=Gracilar... [more]
A0A6M2AAF0_9BACT2.160e-3848.72tRNA-specific adenosine deaminase n=1 Tax=Chlamydi... [more]
D6YV96_WADCW2.240e-3847.10tRNA-specific adenosine deaminase n=2 Tax=Waddlia ... [more]
A0A0G4GWR4_VITBC5.320e-3847.10CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A1M3BDS4_9CHLA6.430e-3846.39tRNA-specific adenosine deaminase n=1 Tax=Chlamydi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8854contigEcto-sp13_S_contig8854:2478..6631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score807.7
Seed ortholog evalue3e-231
Seed eggNOG ortholog2880.D7G6H3
Model size1530
KEGG rclassRC00477
KEGG koko:K11991,ko:K12193,ko:K15441
KEGG ReactionR10223
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.deaminase activity
EggNOG OGsCOG0590@1,KOG1018@2759
EC3.5.4.33
Cds size1530
COG Functional cat.FJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464157.650698-CDS-Ecto-sp13_S_contig8854:2477..26461681464157.650698-CDS-Ecto-sp13_S_contig8854:2477..2646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8854 2478..2646 +
1681464157.6671672-CDS-Ecto-sp13_S_contig8854:4185..51231681464157.6671672-CDS-Ecto-sp13_S_contig8854:4185..5123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8854 4186..5123 +
1681464157.682281-CDS-Ecto-sp13_S_contig8854:5488..56171681464157.682281-CDS-Ecto-sp13_S_contig8854:5488..5617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8854 5489..5617 +
1681464157.691961-CDS-Ecto-sp13_S_contig8854:5935..60281681464157.691961-CDS-Ecto-sp13_S_contig8854:5935..6028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8854 5936..6028 +
1681464157.7031853-CDS-Ecto-sp13_S_contig8854:6430..66311681464157.7031853-CDS-Ecto-sp13_S_contig8854:6430..6631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8854 6431..6631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8854.20348.1prot_Ecto-sp13_S_contig8854.20348.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8854 2478..6631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8854.20348.1

>prot_Ecto-sp13_S_contig8854.20348.1 ID=prot_Ecto-sp13_S_contig8854.20348.1|Name=mRNA_Ecto-sp13_S_contig8854.20348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=510bp
MTSRGLNTAAGAAISARYMTIIMSIAVLRDVVAWRNGACLQRLRGKWSCT
AVHTVSSPPVSRQIRGHRRLRALPGSLSPHRDSGCQSAKDHPTTSRRRRC
RLRSGSTVHDWPLSPQRSPSSSADFVDRDEQEPVTAVASVGALRNGGSGE
TTTRRAGNTVGYAHQTHGGSNRCRRKRRRRRRQRLRLQTLGDMEVGAAEA
LSAMEATIVEAESLGLETAIRPSTGVGAAVAPSIVDSKANVANRERCQRQ
QQLLQVDGVVSAEEIATRDDVDTDLSRSGGEDVSCSGSGSFSEERSSTST
RTRPLATGGLEGSQLMAEQVETLLQGGHSEAVQDNYASEVPKYSEEDDDR
FMRIALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRR
DASAHAEMLCLRVAAKARSNWRLAGTTLFVTVEPCAMCLSAAQLFRVDRV
VFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSR
RRGGEIASAG
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mRNA from alignment at Ecto-sp13_S_contig8854:2478..6631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8854.20348.1 ID=mRNA_Ecto-sp13_S_contig8854.20348.1|Name=mRNA_Ecto-sp13_S_contig8854.20348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4154bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8854:2478..6631+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGCAGAGGGCTGAATACTGCTGCTGGAGCAGCAATATCGGCCAG
ATATATGACAATTATTATGTCAATCGCGGTGTTGCGAGATGTGGTGGCCT
GGCGGAACGGGGCCTGCCTCCAAAGGCTGCGAGGCAAGTGGTCATGCACA
GCAGTGCATACAGTCAGCAGTTGATACAAGGCACGTGTTATACCGGTGCT
GCTGGGCGTACTAATACGCGATTTTCTCTTGTGTAGCGGGGGCTGTAGAA
CCATGTTTACTCAATGCCTGTTTGCCGACAATGTGTCATCTTACTGTGCT
ACCTCTTTACTTATAAATATGACATGTTTGCGGCCACGTTCAATGAGTCA
TGGACTGGTGTAGTGAGATACCACACCCCCCGGCCAGATTTTGAGAGATC
GATTACGCCACCGTGAAGAGTGGCAGCGCCGAAGATGGCGGCGTTGAAAC
GGTCCCATCGAGATCTCTCCGAAAGATAACCATTTTATTTTGGTATCCTC
TTCGTCGCGGAGTTGTCGAGCTTTGAAAAACGGTCCAGGGGGTGTGGTAT
CTTGTGTCGCCTATGGTATCCGTTGGCCATGGGTGAAACCCGAACGGCCT
AGTTGTTCTGCAGTATTGCCCATCAGGCACGCACAGATTGCATGCGCATT
TGCAGCTTGCACCTTGGCCATGTGCTTCCATGGCAACAGGGGAGCGGCGA
TACTTGTCGTCATCGGTGATGTAAATAGAGAGCTACACGAGTCGCGAAGA
GTTGCCTGCACCCCCCCTCCTCCGTCGGACGTGAGATCGGTGCATGAAGA
ACACACGGTCGTAGCTGTGCACCATATCGCCTGAGCTATGTAGCAACTCA
GCGACGGACTGTTCGCTCAGTGGTATCACATATGCATAGTACACAAGACA
GTTCACCCAGCGATACCACTTTTGGCGTTTAATGACATCACCATCCGGTG
TGGTATTCGCGGGGAGAGCGTCTAGGTCACACCAGTGCTACCGAGAGAGT
TTCCTTCGTGAGCCTTCTTTATCGCTACAGTAGCGGCTACGGTTTAACAT
AAGATGTTTAACAGAGAGGTCTGGGTTTAACAGAGCGAACTGGCTTGGCA
CGGCCAAAATCGGTTTATCAGAAAATTTGTCTTATTTCTGAGATTTTCTG
TTAAATCGAGCTTCTGGAGGCCGCGCCACGTATCGGGTGGTTCGTCCAGT
GGGTGATTGGGTGGATTTTCTCTTGGATGCGGGAGCATCCGTGGGCTCGT
GTTGTAGTTCCACAAGAGCCGCGAGTAGCAGCACATCTATGACAAGGCAA
CGACACTAAAGAAGTCTGACGCGTGATTTGTTTCCCAACACTTTCTACCA
AGAGCGTACAAGTGGTTCATTTTGCTCGCCAACCAACAGATAGAGCGGTG
TGTGGAGCTAGCCCAAGGGGCGGGCGCTACCTGCGTTATCTGTCATGAAT
GAGACGCTCTCCATCATTTCTTGCGGCACACACTGCTGCTGTTGGGACGA
CTGGGTCCGTGTTTCACGGCCTGTCGTTTTGGCTACGTTATAGCATAACA
TTATGTTAAACCGTAGCCAAAACGTTTTGAACAGAAGTGCCGATTTCACA
TAGGGATTTTGGCTTTTCACGACCCTATGTTAAATCGTAGCCGCTACTGT
AACTAAACCGGAAACAACATTGGACCTCGTTCACCCAACACCTGATACCT
CTTCACAGGTCCACCAGTCTCGAGGCAGATACGCGGGCACCGCCGGTTAA
GAGCCCTGCCGGGAAGTCTGTCTCCACATCGTGACTCCGGGTGCCAAAGT
GCTAAGGACCATCCCACTACCTCTCGCCGGCGGAGATGTCGATTGCGCAG
CGGTAGCACTGTCCACGACTGGCCGCTCTCGCCCCAGCGAAGCCCATCGA
GTTCCGCGGATTTCGTCGATCGCGACGAACAGGAGCCGGTAACAGCAGTG
GCAAGCGTTGGGGCTTTGCGAAATGGTGGAAGTGGAGAAACGACGACTCG
TCGGGCCGGAAACACCGTAGGTTATGCCCACCAGACACATGGCGGAAGTA
ACCGATGCCGAAGAAAGCGGCGGCGGCGGCGGCGGCAGCGGTTGCGCCTG
CAGACCTTAGGAGACATGGAGGTAGGAGCCGCGGAGGCTTTGTCGGCGAT
GGAGGCTACTATCGTCGAGGCTGAGAGCTTGGGCCTTGAGACTGCAATTC
GCCCGAGCACCGGCGTCGGAGCAGCGGTGGCACCTAGCATTGTAGATAGT
AAGGCGAACGTTGCCAACAGGGAAAGATGTCAGCGGCAGCAGCAGCTCCT
GCAGGTGGATGGTGTCGTGTCCGCTGAGGAGATTGCCACTAGAGACGACG
TGGACACCGACCTCTCCCGTTCTGGTGGGGAGGACGTGTCATGCTCAGGT
TCTGGTTCGTTCTCCGAAGAACGCAGTAGTACCAGCACCAGGACGAGGCC
GTTGGCGACAGGGGGGTTGGAAGGCTCACAGCTGATGGCTGAGCAGGTTG
AAACCCTGCTTCAAGGAGGGCATTCGGAGGCCGTTCAAGATAATTACGCC
TCAGAAGTCCCGAAGTATTCGGAGGAAGATGATGACCGATTCATGCGTAT
AGCTTTACGGTTGGCAGGACGAGCCCGCATGGAGGGTGAAGTGCCGGTGA
ATAACCCTCTTCGTTGTGTCGCTTCGTTGGTTCCACACAGCTGCTAGCCA
CACTCCTTGTTCTTGTTTCATTTCGTTGCGAGTGACCTCCTGCATGCATG
CGTTTGTGGCACGATAGGTTGGCGTTGCGGTATCCTCTTTTTATCGTCGA
GCTGACCTATGATCGTGTATTTGTTCCTGCCATGCATCCCAATCACATGG
TCGTTAGGAAGTCGACAGGAAGGCCACGTGTGCTTCCTCCAAGCCCCATA
CGAAGCAGTATTGCTCTGGTCCAACTGGTTATACCTTCATCGATGCCAAC
CTCTACCCCCTTTAACCGTCTGCTTGTACACTTCCCTCTGTCGCATTGGG
TATTTGTCCAGATCGGAGCTATTTTGGCGGAGACCGTGCCGACAAGGAGA
GATGGAAGGCGACGAGTGCTGTCGACCGGCAGAAACGAAGTGGAGGGGCG
CCGTGACGCCTCGGCGCACGCCGAAATGCTGTGTCTCCGGGTGGGTCCAT
ATGGTCGAGGACCGAAACACGTTTGTCGGATTGGCAGAAGAAGCCGAGCA
GGGCTGACATGGAGTGAACTGCTGTCCAACCCAACTGCTCGCTCTTTGAG
TGCCTTGTTGAGCATCACTTGGAGCAAACTTCCAAGTTGCTGCCGAGGCT
CCCTGGTCGGTGACACCCTAACCTAGAAGGCATTTCCACGAAAAGAATCA
ACGCGCACTCGCTACGTTCTGAGTGCGTCCGATATTTTACTAACGCATGC
CGTACCTTCCATGTTTTTATGCGTACACTTTACATGGTCAAAAACCCCAA
CCCGCAAGGTAGCGGCGAAAGCACGGAGCAACTGGAGGCTTGCCGGGACC
ACGCTCTTTGTCACGGTGGAGCCGTGCGCCATGTGTCTTTCAGCTGCACA
GGTCAGAGCCAGCACCGCAAATGAGTCCTGTTTATTGAAAAGCTCCGACC
ACTGTCGCAGTAGTATTAACGCGTAGGAGATTGTCTCGGTTAAGGACGCA
TACTCTCGTGATCTTGTCGACGTGGAGTGGGAACGAGCGGTGACGGCGCA
ACGTACGACCTGTCCTTGGGTTTCTGCAACTGCACACGCCCGGCCCACCA
GATGTGATTTTGACCTTACCATCTCCGAGTTCGTAGACGGCTTGTGGGTT
TCGGCTCCCGAACGCCCCGCCAGGCTCGTCACCTGGTACTATTCTTCTCA
GGAACGGGCTTAGTCTGACGAAACCGCAAATCTGGTTGATTTCTGTCATG
CGTGTCTCTCCAACCAGTGCCCCCGGCTTCCATTTTCCGCATTGCCGTCT
CAGCTTTTCCGGGTTGATAGGGTGGTGTTCGGAGCCCCAAACCCTAACCT
CGGGGCTTGTGGCGGCTGGGTGGACCTGTCCTCTCAAAGACATGCCTTTC
ATGAGCTCGAAGTCAAGGGGGGCGTGCTCGCGGAGGAGTGCGCGTTACCC
TTGCGTGGATTTTTTCGCTCGAGGAGAAGAGGGGGGGAGATCGCCTCGGC
CGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8854:2478..6631+

>mRNA_Ecto-sp13_S_contig8854.20348.1 ID=mRNA_Ecto-sp13_S_contig8854.20348.1|Name=mRNA_Ecto-sp13_S_contig8854.20348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8854:2478..6631+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGCAGAGGGCTGAATACTGCTGCTGGAGCAGCAATATCGGCCAG
ATATATGACAATTATTATGTCAATCGCGGTGTTGCGAGATGTGGTGGCCT
GGCGGAACGGGGCCTGCCTCCAAAGGCTGCGAGGCAAGTGGTCATGCACA
GCAGTGCATACAGTCAGCAGTCCACCAGTCTCGAGGCAGATACGCGGGCA
CCGCCGGTTAAGAGCCCTGCCGGGAAGTCTGTCTCCACATCGTGACTCCG
GGTGCCAAAGTGCTAAGGACCATCCCACTACCTCTCGCCGGCGGAGATGT
CGATTGCGCAGCGGTAGCACTGTCCACGACTGGCCGCTCTCGCCCCAGCG
AAGCCCATCGAGTTCCGCGGATTTCGTCGATCGCGACGAACAGGAGCCGG
TAACAGCAGTGGCAAGCGTTGGGGCTTTGCGAAATGGTGGAAGTGGAGAA
ACGACGACTCGTCGGGCCGGAAACACCGTAGGTTATGCCCACCAGACACA
TGGCGGAAGTAACCGATGCCGAAGAAAGCGGCGGCGGCGGCGGCGGCAGC
GGTTGCGCCTGCAGACCTTAGGAGACATGGAGGTAGGAGCCGCGGAGGCT
TTGTCGGCGATGGAGGCTACTATCGTCGAGGCTGAGAGCTTGGGCCTTGA
GACTGCAATTCGCCCGAGCACCGGCGTCGGAGCAGCGGTGGCACCTAGCA
TTGTAGATAGTAAGGCGAACGTTGCCAACAGGGAAAGATGTCAGCGGCAG
CAGCAGCTCCTGCAGGTGGATGGTGTCGTGTCCGCTGAGGAGATTGCCAC
TAGAGACGACGTGGACACCGACCTCTCCCGTTCTGGTGGGGAGGACGTGT
CATGCTCAGGTTCTGGTTCGTTCTCCGAAGAACGCAGTAGTACCAGCACC
AGGACGAGGCCGTTGGCGACAGGGGGGTTGGAAGGCTCACAGCTGATGGC
TGAGCAGGTTGAAACCCTGCTTCAAGGAGGGCATTCGGAGGCCGTTCAAG
ATAATTACGCCTCAGAAGTCCCGAAGTATTCGGAGGAAGATGATGACCGA
TTCATGCGTATAGCTTTACGGTTGGCAGGACGAGCCCGCATGGAGGGTGA
AGTGCCGATCGGAGCTATTTTGGCGGAGACCGTGCCGACAAGGAGAGATG
GAAGGCGACGAGTGCTGTCGACCGGCAGAAACGAAGTGGAGGGGCGCCGT
GACGCCTCGGCGCACGCCGAAATGCTGTGTCTCCGGGTAGCGGCGAAAGC
ACGGAGCAACTGGAGGCTTGCCGGGACCACGCTCTTTGTCACGGTGGAGC
CGTGCGCCATGTGTCTTTCAGCTGCACAGCTTTTCCGGGTTGATAGGGTG
GTGTTCGGAGCCCCAAACCCTAACCTCGGGGCTTGTGGCGGCTGGGTGGA
CCTGTCCTCTCAAAGACATGCCTTTCATGAGCTCGAAGTCAAGGGGGGCG
TGCTCGCGGAGGAGTGCGCGTTACCCTTGCGTGGATTTTTTCGCTCGAGG
AGAAGAGGGGGGGAGATCGCCTCGGCCGGC
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