mRNA_Ecto-sp13_S_contig8850.20343.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8850.20343.1
Unique NamemRNA_Ecto-sp13_S_contig8850.20343.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: A0A6H5JXF8_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF8_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 2.520e-65
Identity = 96/104 (92.31%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVC-----TMRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVVK 297
            AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYE C      +RPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVVK
Sbjct:  115 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEECHAPGRRVRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVVK 218
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BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: D8LEI9_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI9_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 2.690e-63
Identity = 96/104 (92.31%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVC-----TMRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVVK 297
            AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYE C      +RPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVVK
Sbjct:  316 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEECHAPTRRVRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVVK 419
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BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: A0A835YQR8_9STRA (JmjC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQR8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.460e-45
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVCTMRP---LECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVV 294
            AWNA + GRKKW++FPP   PPGVHPS DG+DL APVS+ EWFLNFY+    +    LECVVSAGEVVFVP GWWHCVLNL+++VAITQNFVSRVNL  V+
Sbjct:  311 AWNAVLEGRKKWVLFPPNCPPPGVHPSSDGMDLVAPVSVMEWFLNFYDAAKRQRNGMLECVVSAGEVVFVPRGWWHCVLNLDFTVAITQNFVSRVNLAPVL 411
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BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: T1MN28_TRIUA (JmjC domain-containing protein n=2 Tax=Triticum TaxID=4564 RepID=T1MN28_TRIUA)

HSP 1 Score: 145 bits (365), Expect = 3.200e-42
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVCTM---RPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSR 273
            AWNA + G KKW+MFPP   PPGVHPS DG ++ +PVSI EWF+NFY  C     RP+ECV  AGE+VFVP GWWH V+NLE S+AITQN+VSR
Sbjct:   81 AWNAVIKGAKKWVMFPPEVPPPGVHPSSDGAEVTSPVSIMEWFMNFYGACRTWEKRPIECVCRAGEIVFVPNGWWHLVINLEESIAITQNYVSR 174
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BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: A0A5P1ES94_ASPOF (JmjC domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ES94_ASPOF)

HSP 1 Score: 149 bits (376), Expect = 3.420e-42
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVCT---MRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVV 294
            AWNA + G KKW+MFPP   PPGVHPS DG ++A PVSI EWF+NFY  C     RP+ECV  AG+VVFVP GWWH V+NLE S+AITQN+VSR NL +V+
Sbjct:  149 AWNAVIKGSKKWVMFPPEVVPPGVHPSPDGAEVACPVSIMEWFMNFYGACKDWKRRPVECVCKAGDVVFVPNGWWHLVINLEDSIAITQNYVSRRNLLNVL 249
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BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: A0A199VYJ4_ANACO (F-box protein n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A199VYJ4_ANACO)

HSP 1 Score: 152 bits (385), Expect = 5.900e-42
Identity = 68/101 (67.33%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVCTM---RPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVV 294
            AWNA VSG KKW+MFPP   PPGVHPS DG ++A PVSI EWF+NFYE C     RP+EC+  AGEVVFVP GWWH V+NLE SVAITQN+VS+ NL +V+
Sbjct:  342 AWNAVVSGSKKWVMFPPEVVPPGVHPSPDGAEVACPVSIMEWFMNFYEQCKTWRKRPVECICRAGEVVFVPNGWWHLVINLEDSVAITQNYVSKRNLLNVL 442
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BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: A0A7S2C592_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C592_9STRA)

HSP 1 Score: 142 bits (359), Expect = 6.700e-42
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVC------TMRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNL 282
            AWNA +SGRKKW++FPPG  PPGV+PSEDG  +A P S  EWF  FYE        ++RP ECVV AG+V+FVP GWWH V+NLE SVAITQN VSR NL
Sbjct:   33 AWNACLSGRKKWVLFPPGVHPPGVYPSEDGSQVACPHSAIEWFHGFYEASISLSDKSLRPRECVVEAGQVIFVPRGWWHMVINLEESVAITQNLVSRTNL 132
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BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: A0A5D2VCK3_GOSMU (JmjC domain-containing protein n=1 Tax=Gossypium mustelinum TaxID=34275 RepID=A0A5D2VCK3_GOSMU)

HSP 1 Score: 147 bits (372), Expect = 1.180e-41
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVCT---MRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVV 294
            AWNA + G KKWI+FPP   PPGVHPS DG ++A PVSI EWF+NFY+       RP+EC+  AGEV+FVP GWWH V+NLE SVAITQN+VSR NL +V+
Sbjct:  149 AWNAVIRGSKKWILFPPDVVPPGVHPSPDGAEVACPVSIIEWFMNFYDATKDWKKRPIECICKAGEVIFVPNGWWHLVINLEESVAITQNYVSRRNLLNVL 249
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BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: A0A067KM29_JATCU (JmjC domain-containing protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KM29_JATCU)

HSP 1 Score: 147 bits (372), Expect = 1.320e-41
Identity = 63/102 (61.76%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVCTM---RPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVVK 297
            AWNA + G KKWI+FPP   PPGVHPS DG ++A PVSI EWF+NFY+       RP+EC+  AGEV+FVP GWWH V+NLE S+AITQN+VSR NL +V++
Sbjct:  149 AWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVACPVSIIEWFMNFYDATKSWKRRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLE 250
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Match: A0A2U1QBZ3_ARTAN (F-box domain, cyclin-like protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QBZ3_ARTAN)

HSP 1 Score: 151 bits (382), Expect = 1.350e-41
Identity = 66/101 (65.35%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    1 AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYE---VCTMRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVV 294
            AWNA V G KKW++FPP   PPGVHPS DG ++A PVSITEWF+NFYE       +P+ECV  AGEV+FVP GWWH V+NLE S+AITQNFVSR NL +V+
Sbjct:  330 AWNAVVKGSKKWVLFPPDVVPPGVHPSSDGAEVACPVSITEWFMNFYESTKTWKKKPVECVCKAGEVIFVPQGWWHLVINLEDSIAITQNFVSRRNLLNVL 430
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8850.20343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXF8_9PHAE2.520e-6592.31JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEI9_ECTSI2.690e-6392.31JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YQR8_9STRA2.460e-4570.30JmjC domain-containing protein (Fragment) n=1 Tax=... [more]
T1MN28_TRIUA3.200e-4264.89JmjC domain-containing protein n=2 Tax=Triticum Ta... [more]
A0A5P1ES94_ASPOF3.420e-4264.36JmjC domain-containing protein n=2 Tax=Asparagus o... [more]
A0A199VYJ4_ANACO5.900e-4267.33F-box protein n=4 Tax=Ananas comosus TaxID=4615 Re... [more]
A0A7S2C592_9STRA6.700e-4264.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A5D2VCK3_GOSMU1.180e-4163.37JmjC domain-containing protein n=1 Tax=Gossypium m... [more]
A0A067KM29_JATCU1.320e-4161.76JmjC domain-containing protein n=2 Tax=Jatropha cu... [more]
A0A2U1QBZ3_ARTAN1.350e-4165.35F-box domain, cyclin-like protein n=1 Tax=Artemisi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8850contigEcto-sp13_S_contig8850:5875..6629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score209.9
Seed ortholog evalue5.4e-52
Seed eggNOG ortholog2880.D8LEI9
Model size300
KEGG koko:K11323
Hectar predicted targeting categoryother localisation
GOsGO:0000976,GO:0000987,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0010029,GO:0010030,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018193,GO:0018195,GO:0018216,GO:0019538,GO:0032259,GO:0034969,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043565,GO:0043985,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0051276,GO:0065007,GO:0071704,GO:0071840,GO:0097159,GO:1900140,GO:1901363,GO:1901564,GO:1990837,GO:2000026
Exons2
EggNOG free text desc.peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
EggNOG OGsKOG2130@1,KOG2130@2759
Cds size300
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464157.2723286-CDS-Ecto-sp13_S_contig8850:5874..60201681464157.2723286-CDS-Ecto-sp13_S_contig8850:5874..6020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8850 5875..6020 -
1681464157.283395-CDS-Ecto-sp13_S_contig8850:6475..66291681464157.283395-CDS-Ecto-sp13_S_contig8850:6475..6629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8850 6476..6629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8850.20343.1prot_Ecto-sp13_S_contig8850.20343.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8850 5875..6629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8850.20343.1

>prot_Ecto-sp13_S_contig8850.20343.1 ID=prot_Ecto-sp13_S_contig8850.20343.1|Name=mRNA_Ecto-sp13_S_contig8850.20343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
AWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEVC
TMRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVVK*
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mRNA from alignment at Ecto-sp13_S_contig8850:5875..6629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8850.20343.1 ID=mRNA_Ecto-sp13_S_contig8850.20343.1|Name=mRNA_Ecto-sp13_S_contig8850.20343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=755bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8850:5875..6629- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTGGAACGCCACGGTGTCTGGCAGGAAGAAGTGGATCATGTTCCCCCC
CGGAGAGACGCCTCCGGGAGTTCACCCTAGCGAAGACGGGCTGGACCTGG
CCGCTCCCGTGTCCATCACGGAGTGGTTCCTCAACTTCTATGAGGTATGT
ACCAGTGTCAAATGTCTGTTGTTTTTTCCTCTTTTTTCCCCTTTTTGTTC
TTCAGCTTGTGAGTGGCCACCACGGTAGCCCACTGTTGTACCAGCTATCA
AGTAGTCTACGGTGCATGTCCACGCGGTACCTCTTTGTTTTCTCGGTTTT
GCTCTTGTGCAGGTTGGGACTGGCTCCCGCGGCACCCCACGTGTTGCTTC
TCAAAAGTCTGGACGATGTCTCCGCAACGAATTTTTCTTAATTTATATTG
GATGCATGTGTACACAGCCAAGTGAGTCGACGCTATGTGTACCTACGGTG
GCACCGCTGTTGCATTTTTGGGTCTCGGGGTTGTGCTACAGACTATCTCT
CCTGTTTTCTCTTGGCGTGTCTTTTTTTGTGTGGTGCCGTTTTTGTTTTT
TTTTACACTTTTCCCGGCGTGTTTGTTCCGCCAGGAATGCCACGCGCCCG
GACGGAGAGTGCGCCCTCTGGAGTGCGTCGTGTCTGCAGGGGAGGTGGTG
TTCGTGCCCATGGGGTGGTGGCACTGCGTCCTCAACCTCGAGTGGTCCGT
CGCGATAACCCAGAACTTCGTCAGCAGGGTGAATCTTCCGCACGTCGTCA
AGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8850:5875..6629-

>mRNA_Ecto-sp13_S_contig8850.20343.1 ID=mRNA_Ecto-sp13_S_contig8850.20343.1|Name=mRNA_Ecto-sp13_S_contig8850.20343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8850:5875..6629- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTGGAACGCCACGGTGTCTGGCAGGAAGAAGTGGATCATGTTCCCCCC
CGGAGAGACGCCTCCGGGAGTTCACCCTAGCGAAGACGGGCTGGACCTGG
CCGCTCCCGTGTCCATCACGGAGTGGTTCCTCAACTTCTATGAGGTATGT
ACCATGCGCCCTCTGGAGTGCGTCGTGTCTGCAGGGGAGGTGGTGTTCGT
GCCCATGGGGTGGTGGCACTGCGTCCTCAACCTCGAGTGGTCCGTCGCGA
TAACCCAGAACTTCGTCAGCAGGGTGAATCTTCCGCACGTCGTCAAGTGA
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