prot_Ecto-sp13_S_contig8850.20342.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8850.20342.1
Unique Nameprot_Ecto-sp13_S_contig8850.20342.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length339
Homology
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 1.580e-117
Identity = 274/339 (80.83%), Postives = 279/339 (82.30%), Query Frame = 0
Query:    3 RPARIVASGPPKVSEDREAAVSVAALGEEPTVKPEMAAVKAETAETAAEAAXXXXXXXXXXXXXXXXXXXXXXAEAKAA--HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKERAVVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMSAEPGSPPVGMEVEAAPLAIWGGSSENXXXXXXXXXXXXXTLSGSCSKTAXXXXXXXXVRRHLSVVDEGVRNHRQRNEPSAVVTTPPPLTVGHATPTADLSSSMSSRPASDNAARDRSGEAGF 339
            RPARIVASGPPKVSED EAAVS+AA GEEP VK EMA              XXXXXXXXXXXXXXXXXXXXXX        HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGV+CLIDERIR GEWKHVKFLAKWMRDLRGDYPSFEHVV TMDQFFASAPGFVREEKERA VL               XXXXXXXXXXXXXXXXXXXL+SAE  S PVGMEVEA PLA WGG SENXXXXXXX      TLSGSCSKT XXXXXXXXVRR LSVVDEGVRNHRQRNEPSAVVT PPPLTV HATPTADLSSS+SS+PASDNAARDRSGEAGF
Sbjct:  569 RPARIVASGPPKVSEDGEAAVSLAAPGEEPAVKAEMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVVCLIDERIRAGEWKHVKFLAKWMRDLRGDYPSFEHVVGTMDQFFASAPGFVREEKERAAVLRHQASVRRRRAKEMAXXXXXXXXXXXXXXXXXXXLLSAEAESSPVGMEVEAVPLANWGGGSENXXXXXXXG-----TLSGSCSKTXXXXXXXXXVRRPLSVVDEGVRNHRQRNEPSAVVTPPPPLTVRHATPTADLSSSVSSQPASDNAARDRSGEAGF 902          
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 3.560e-78
Identity = 164/178 (92.13%), Postives = 166/178 (93.26%), Query Frame = 0
Query:    3 RPARIVASGPPKVSEDREAAVSVAALGEEPTVKPEMAAVKAETAETAAEAAXXXXXXXXXXXXXXXXXXXXXXAEAKAAHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKERAVVL 180
            RPARIVASGPPKVS D EAAVS+AALGEEP V  EMAA KAET ETAAEAA XXXXXXXXXXXXXXXXXXXXX   KAAHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIR GEWKHVKFLAKWMRDLRGDYPSFEHVVDT+DQFFASAPGFVREEKERAVVL
Sbjct: 1268 RPARIVASGPPKVSADVEAAVSLAALGEEPAVMTEMAAAKAETGETAAEAAVXXXXXXXXXXXXXXXXXXXXXXXXKAAHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRAGEWKHVKFLAKWMRDLRGDYPSFEHVVDTIDQFFASAPGFVREEKERAVVL 1445          
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A6P6AXB5_DURZI (Fanconi anemia group J protein n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AXB5_DURZI)

HSP 1 Score: 89.0 bits (219), Expect = 1.150e-15
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 0
Query:   82 HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKE 175
            +++ K LLSGS WY  +A+RA NQALGRCIRH YDYG I L+D R    +++   +++KW+R     Y SFE  +D +  FF      V ++K+
Sbjct:  708 YKSSKHLLSGSEWYCHQAFRALNQALGRCIRHKYDYGAIILLDWRFEQEKYR--AYISKWLRPFIRKYESFESTLDELRSFFRDVKDLVGKKKQ 799          
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A7J0EIK3_9ERIC (RAD3-like DNA-binding helicase protein n=2 Tax=Actinidia TaxID=3624 RepID=A0A7J0EIK3_9ERIC)

HSP 1 Score: 89.0 bits (219), Expect = 1.170e-15
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 0
Query:   82 HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREE 173
            +++ + LLSGS WY Q+A+RA NQA GRCIRH +DYG + L+DER R  E +++ +++KW+R     Y SF+  V+ +  FF  A   V +E
Sbjct:  828 YKSSRNLLSGSEWYCQQAFRALNQAAGRCIRHRFDYGAVILLDERFR--EERNITYISKWLRKSMRQYDSFDKSVEELKYFFRDAKERVGKE 917          
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: S8CNP1_9LAMI (HELICc2 domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CNP1_9LAMI)

HSP 1 Score: 82.0 bits (201), Expect = 1.300e-15
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 0
Query:   82 HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFF 163
            +E  K LL+G+ WY Q+A+RA NQA+GRCIRH +DYG I  +DER      ++  +++KW+R+    Y SFE  ++++  FF
Sbjct:   40 YETSKKLLNGNEWYCQQAFRALNQAIGRCIRHRFDYGAIIFLDERFHRE--RNRVYISKWLRNTIKLYDSFEESLESLKSFF 119          
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A446UJA2_TRITD (Helicase ATP-binding domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446UJA2_TRITD)

HSP 1 Score: 88.6 bits (218), Expect = 1.380e-15
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 0
Query:   81 AHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKER 176
            ++++ K LLSGS WY  +A+RA NQA GRCIRH +DYG I LIDER +  E +++  ++KW+++    Y SF+  +D M++FF  A   +R   ++
Sbjct:  692 SYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDERYQ--EERNLLHISKWLKNSIKHYGSFQETMDKMEKFFQKAENILRSNVKK 785          
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A835FI22_9POAL (DNA helicase n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835FI22_9POAL)

HSP 1 Score: 88.6 bits (218), Expect = 1.500e-15
Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 0
Query:   81 AHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKERA 177
            ++++ K LLSGS WY  +A+RA NQA GRCIRH  DYG I LIDER R  E +++ +++KW+R+    Y SF++ +D + +FF +A     EEK ++
Sbjct:  529 SYKSSKYLLSGSEWYCHQAFRALNQAAGRCIRHKSDYGGIILIDERYR--EDRNLVYISKWLRNAIKQYDSFQNTMDRLQKFFQNA-----EEKAKS 618          
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A7C9A0H8_OPUST (DNA helicase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9A0H8_OPUST)

HSP 1 Score: 82.0 bits (201), Expect = 2.720e-15
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0
Query:   86 KALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKERAVVL 180
            K LLSGS+WY  +A+RA NQA GRCIRH +DYG I L+DER    E ++  +++KW+R     Y SFE  V+ +  FF++    V+E  + A +L
Sbjct:   46 KNLLSGSDWYCHQAFRALNQAAGRCIRHRFDYGAIILLDERF--CEERNTIYISKWLRKSIRTYDSFEMSVEELRSFFSN----VKERIDSAKML 134          
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A446TBW4_TRITD (Helicase ATP-binding domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446TBW4_TRITD)

HSP 1 Score: 87.4 bits (215), Expect = 3.630e-15
Identity = 40/95 (42.11%), Postives = 65/95 (68.42%), Query Frame = 0
Query:   81 AHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKE 175
            ++++ K LLSGS WY  +A+RA NQA GRCIRH +DYG I LIDER +  E +++  ++KW+++    Y SF+  +D M++FF  A   ++ +++
Sbjct:  444 SYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDERYQ--EERNLLHISKWLKNSIKHYGSFQETMDKMEKFFQKAEEHIKIKRQ 536          
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: N1R1T5_AEGTA (Fanconi anemia group J protein-like protein n=1 Tax=Aegilops tauschii TaxID=37682 RepID=N1R1T5_AEGTA)

HSP 1 Score: 87.4 bits (215), Expect = 3.650e-15
Identity = 40/95 (42.11%), Postives = 65/95 (68.42%), Query Frame = 0
Query:   81 AHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKE 175
            ++++ K LLSGS WY  +A+RA NQA GRCIRH +DYG I LIDER +  E +++  ++KW+++    Y SF+  +D M++FF  A   ++ +++
Sbjct:  536 SYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDERYQ--EERNLLHISKWLKNSIKHYGSFQETMDKMEKFFQKAEEHIKIKRQ 628          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ0_ECTSI1.580e-11780.83Helicase ATP-binding domain-containing protein n=1... [more]
A0A6H5JZN2_9PHAE3.560e-7892.13Helicase ATP-binding domain-containing protein n=1... [more]
A0A6P6AXB5_DURZI1.150e-1543.62Fanconi anemia group J protein n=1 Tax=Durio zibet... [more]
A0A7J0EIK3_9ERIC1.170e-1544.57RAD3-like DNA-binding helicase protein n=2 Tax=Act... [more]
S8CNP1_9LAMI1.300e-1543.90HELICc2 domain-containing protein (Fragment) n=1 T... [more]
A0A446UJA2_TRITD1.380e-1542.71Helicase ATP-binding domain-containing protein n=1... [more]
A0A835FI22_9POAL1.500e-1545.36DNA helicase n=2 Tax=Digitaria exilis TaxID=101063... [more]
A0A7C9A0H8_OPUST2.720e-1545.26DNA helicase (Fragment) n=1 Tax=Opuntia streptacan... [more]
A0A446TBW4_TRITD3.630e-1542.11Helicase ATP-binding domain-containing protein n=1... [more]
N1R1T5_AEGTA3.650e-1542.11Fanconi anemia group J protein-like protein n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..77
NoneNo IPR availableGENE3D3.40.50.300coord: 66..143
e-value: 1.6E-13
score: 52.6
NoneNo IPR availablePANTHERPTHR11472:SF47FANCONI ANEMIA GROUP J PROTEINcoord: 75..189
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 75..189
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 79..143
e-value: 9.8E-15
score: 55.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8850contigEcto-sp13_S_contig8850:525..2453 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8850.20342.1mRNA_Ecto-sp13_S_contig8850.20342.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8850 525..2455 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8850.20342.1 ID=prot_Ecto-sp13_S_contig8850.20342.1|Name=mRNA_Ecto-sp13_S_contig8850.20342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=339bp
GGRPARIVASGPPKVSEDREAAVSVAALGEEPTVKPEMAAVKAETAETAA
EAAAAEAAEAEAAAAEMAASRAAAKAEAKAAHEAGKALLSGSNWYAQEAY
RAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYP
SFEHVVDTMDQFFASAPGFVREEKERAVVLRQQASVRRRRAKETAAADAA
QGAPGGSGSDGGGGLMSAEPGSPPVGMEVEAAPLAIWGGSSENGGAGSGG
GSGSGGTLSGSCSKTAAGGSGGGGVRRHLSVVDEGVRNHRQRNEPSAVVT
TPPPLTVGHATPTADLSSSMSSRPASDNAARDRSGEAGF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006555ATP-dep_Helicase_C