mRNA_Ecto-sp13_S_contig8850.20342.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI) HSP 1 Score: 370 bits (950), Expect = 1.580e-117 Identity = 274/339 (80.83%), Postives = 279/339 (82.30%), Query Frame = 1
Query: 7 RPARIVASGPPKVSEDREAAVSVAALGEEPTVKPEMAAVKAETAETAAEAAXXXXXXXXXXXXXXXXXXXXXXAEAKAA--HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKERAVVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMSAEPGSPPVGMEVEAAPLAIWGGSSENXXXXXXXXXXXXXTLSGSCSKTAXXXXXXXXVRRHLSVVDEGVRNHRQRNEPSAVVTTPPPLTVGHATPTADLSSSMSSRPASDNAARDRSGEAGF 1017
RPARIVASGPPKVSED EAAVS+AA GEEP VK EMA XXXXXXXXXXXXXXXXXXXXXX HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGV+CLIDERIR GEWKHVKFLAKWMRDLRGDYPSFEHVV TMDQFFASAPGFVREEKERA VL XXXXXXXXXXXXXXXXXXXL+SAE S PVGMEVEA PLA WGG SENXXXXXXX TLSGSCSKT XXXXXXXXVRR LSVVDEGVRNHRQRNEPSAVVT PPPLTV HATPTADLSSS+SS+PASDNAARDRSGEAGF
Sbjct: 569 RPARIVASGPPKVSEDGEAAVSLAAPGEEPAVKAEMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVVCLIDERIRAGEWKHVKFLAKWMRDLRGDYPSFEHVVGTMDQFFASAPGFVREEKERAAVLRHQASVRRRRAKEMAXXXXXXXXXXXXXXXXXXXLLSAEAESSPVGMEVEAVPLANWGGGSENXXXXXXXG-----TLSGSCSKTXXXXXXXXXVRRPLSVVDEGVRNHRQRNEPSAVVTPPPPLTVRHATPTADLSSSVSSQPASDNAARDRSGEAGF 902
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE) HSP 1 Score: 270 bits (691), Expect = 3.560e-78 Identity = 164/178 (92.13%), Postives = 166/178 (93.26%), Query Frame = 1
Query: 7 RPARIVASGPPKVSEDREAAVSVAALGEEPTVKPEMAAVKAETAETAAEAAXXXXXXXXXXXXXXXXXXXXXXAEAKAAHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKERAVVL 540
RPARIVASGPPKVS D EAAVS+AALGEEP V EMAA KAET ETAAEAA XXXXXXXXXXXXXXXXXXXXX KAAHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIR GEWKHVKFLAKWMRDLRGDYPSFEHVVDT+DQFFASAPGFVREEKERAVVL
Sbjct: 1268 RPARIVASGPPKVSADVEAAVSLAALGEEPAVMTEMAAAKAETGETAAEAAVXXXXXXXXXXXXXXXXXXXXXXXXKAAHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRAGEWKHVKFLAKWMRDLRGDYPSFEHVVDTIDQFFASAPGFVREEKERAVVL 1445
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A6P6AXB5_DURZI (Fanconi anemia group J protein n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AXB5_DURZI) HSP 1 Score: 89.0 bits (219), Expect = 1.150e-15 Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 244 HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKE 525
+++ K LLSGS WY +A+RA NQALGRCIRH YDYG I L+D R +++ +++KW+R Y SFE +D + FF V ++K+
Sbjct: 708 YKSSKHLLSGSEWYCHQAFRALNQALGRCIRHKYDYGAIILLDWRFEQEKYR--AYISKWLRPFIRKYESFESTLDELRSFFRDVKDLVGKKKQ 799
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A7J0EIK3_9ERIC (RAD3-like DNA-binding helicase protein n=2 Tax=Actinidia TaxID=3624 RepID=A0A7J0EIK3_9ERIC) HSP 1 Score: 89.0 bits (219), Expect = 1.170e-15 Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 244 HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREE 519
+++ + LLSGS WY Q+A+RA NQA GRCIRH +DYG + L+DER R E +++ +++KW+R Y SF+ V+ + FF A V +E
Sbjct: 828 YKSSRNLLSGSEWYCQQAFRALNQAAGRCIRHRFDYGAVILLDERFR--EERNITYISKWLRKSMRQYDSFDKSVEELKYFFRDAKERVGKE 917
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: S8CNP1_9LAMI (HELICc2 domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CNP1_9LAMI) HSP 1 Score: 82.0 bits (201), Expect = 1.300e-15 Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 244 HEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFF 489
+E K LL+G+ WY Q+A+RA NQA+GRCIRH +DYG I +DER ++ +++KW+R+ Y SFE ++++ FF
Sbjct: 40 YETSKKLLNGNEWYCQQAFRALNQAIGRCIRHRFDYGAIIFLDERFHRE--RNRVYISKWLRNTIKLYDSFEESLESLKSFF 119
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A446UJA2_TRITD (Helicase ATP-binding domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446UJA2_TRITD) HSP 1 Score: 88.6 bits (218), Expect = 1.380e-15 Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 1
Query: 241 AHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKER 528
++++ K LLSGS WY +A+RA NQA GRCIRH +DYG I LIDER + E +++ ++KW+++ Y SF+ +D M++FF A +R ++
Sbjct: 692 SYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDERYQ--EERNLLHISKWLKNSIKHYGSFQETMDKMEKFFQKAENILRSNVKK 785
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A835FI22_9POAL (DNA helicase n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835FI22_9POAL) HSP 1 Score: 88.6 bits (218), Expect = 1.500e-15 Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 1
Query: 241 AHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKERA 531
++++ K LLSGS WY +A+RA NQA GRCIRH DYG I LIDER R E +++ +++KW+R+ Y SF++ +D + +FF +A EEK ++
Sbjct: 529 SYKSSKYLLSGSEWYCHQAFRALNQAAGRCIRHKSDYGGIILIDERYR--EDRNLVYISKWLRNAIKQYDSFQNTMDRLQKFFQNA-----EEKAKS 618
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A7C9A0H8_OPUST (DNA helicase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9A0H8_OPUST) HSP 1 Score: 82.0 bits (201), Expect = 2.720e-15 Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 256 KALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKERAVVL 540
K LLSGS+WY +A+RA NQA GRCIRH +DYG I L+DER E ++ +++KW+R Y SFE V+ + FF++ V+E + A +L
Sbjct: 46 KNLLSGSDWYCHQAFRALNQAAGRCIRHRFDYGAIILLDERF--CEERNTIYISKWLRKSIRTYDSFEMSVEELRSFFSN----VKERIDSAKML 134
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: A0A446TBW4_TRITD (Helicase ATP-binding domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446TBW4_TRITD) HSP 1 Score: 87.4 bits (215), Expect = 3.630e-15 Identity = 40/95 (42.11%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 241 AHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKE 525
++++ K LLSGS WY +A+RA NQA GRCIRH +DYG I LIDER + E +++ ++KW+++ Y SF+ +D M++FF A ++ +++
Sbjct: 444 SYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDERYQ--EERNLLHISKWLKNSIKHYGSFQETMDKMEKFFQKAEEHIKIKRQ 536
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Match: N1R1T5_AEGTA (Fanconi anemia group J protein-like protein n=1 Tax=Aegilops tauschii TaxID=37682 RepID=N1R1T5_AEGTA) HSP 1 Score: 87.4 bits (215), Expect = 3.650e-15 Identity = 40/95 (42.11%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 241 AHEAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRTGEWKHVKFLAKWMRDLRGDYPSFEHVVDTMDQFFASAPGFVREEKE 525
++++ K LLSGS WY +A+RA NQA GRCIRH +DYG I LIDER + E +++ ++KW+++ Y SF+ +D M++FF A ++ +++
Sbjct: 536 SYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDERYQ--EERNLLHISKWLKNSIKHYGSFQETMDKMEKFFQKAEEHIKIKRQ 628 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8850.20342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8850.20342.1 >prot_Ecto-sp13_S_contig8850.20342.1 ID=prot_Ecto-sp13_S_contig8850.20342.1|Name=mRNA_Ecto-sp13_S_contig8850.20342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=339bp GGRPARIVASGPPKVSEDREAAVSVAALGEEPTVKPEMAAVKAETAETAAback to top mRNA from alignment at Ecto-sp13_S_contig8850:525..2455+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8850.20342.1 ID=mRNA_Ecto-sp13_S_contig8850.20342.1|Name=mRNA_Ecto-sp13_S_contig8850.20342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1931bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8850:525..2455+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8850:525..2455+ >mRNA_Ecto-sp13_S_contig8850.20342.1 ID=mRNA_Ecto-sp13_S_contig8850.20342.1|Name=mRNA_Ecto-sp13_S_contig8850.20342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8850:525..2455+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |