mRNA_Ecto-sp13_S_contig12450.2034.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12450.2034.1
Unique NamemRNA_Ecto-sp13_S_contig12450.2034.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12450.2034.1 vs. uniprot
Match: A0A6H5K771_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K771_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.790e-30
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 1 
Query:  226 VSTTDGVDGGHGRVGAEPPAADVETAGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTESVLNQPPVLSSSLGVDFGESPPFLQLSKGKNSAPAAAAVEGSGMT 573
            VSTTDGVDGGHGRVGAEPPAADVETAGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   TESVLNQPPVLSSSLGVDFGESPPFLQLSKGKNSAPAAAAVEGSGMT
Sbjct:  138 VSTTDGVDGGHGRVGAEPPAADVETAGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TESVLNQPPVLSSSLGVDFGESPPFLQLSKGKNSAPAAAAVEGSGMT 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12450.2034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K771_9PHAE3.790e-3097.41PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12450contigEcto-sp13_S_contig12450:2114..2790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size677
Hectar predicted targeting categorysignal peptide
Exons1
Cds size675
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462663.1245067-CDS-Ecto-sp13_S_contig12450:2113..27881681462663.1245067-CDS-Ecto-sp13_S_contig12450:2113..2788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12450 2114..2788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12450.2034.1prot_Ecto-sp13_S_contig12450.2034.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12450 2114..2788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12450.2034.1

>prot_Ecto-sp13_S_contig12450.2034.1 ID=prot_Ecto-sp13_S_contig12450.2034.1|Name=mRNA_Ecto-sp13_S_contig12450.2034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
AAAFSAALAGVPFSAAASSGEKDGDGPDTAGGTSAAATAPVAAGDEKSAA
AVEGGGAHGLPAGGHHHPETAAKAVVSTTDGVDGGHGRVGAEPPAADVET
AGEGGGGGGGGAAALRRHAGGTDDNDDDDDDDDDDDDEDEDEDDTESVLN
QPPVLSSSLGVDFGESPPFLQLSKGKNSAPAAAAVEGSGMTAAAAAAAAG
KKKQAGGAATAGAPGGAAASTMVGI
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mRNA from alignment at Ecto-sp13_S_contig12450:2114..2790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12450.2034.1 ID=mRNA_Ecto-sp13_S_contig12450.2034.1|Name=mRNA_Ecto-sp13_S_contig12450.2034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=677bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12450:2114..2790+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCGCCTTCTCCGCGGCCCTGGCCGGAGTCCCATTCTCGGCAGCGGC
GTCGTCAGGGGAGAAAGACGGCGACGGCCCTGATACTGCTGGTGGTACTA
GTGCCGCTGCGACAGCTCCGGTTGCCGCGGGAGACGAAAAGAGCGCAGCG
GCGGTGGAAGGGGGTGGCGCGCACGGCCTGCCGGCGGGAGGGCATCATCA
TCCCGAGACCGCGGCGAAGGCGGTGGTGTCCACCACGGACGGCGTTGACG
GGGGTCACGGGCGGGTCGGCGCTGAGCCGCCCGCAGCAGACGTCGAGACG
GCCGGAGAAGGCGGCGGCGGCGGTGGCGGCGGGGCGGCGGCTCTTCGGAG
GCACGCGGGCGGCACGGATGACAACGATGATGACGATGACGACGACGACG
ACGATGACGATGAAGATGAAGATGAAGATGACACGGAGAGCGTGCTGAAC
CAGCCGCCGGTGCTGTCGTCCTCTCTCGGGGTAGACTTCGGGGAGTCGCC
GCCGTTCTTGCAGCTCAGCAAGGGGAAGAACTCCGCCCCCGCCGCCGCCG
CCGTAGAAGGGAGCGGGATGACTGCGGCGGCGGCGGCTGCTGCTGCCGGG
AAGAAGAAGCAGGCTGGTGGAGCGGCAACGGCTGGCGCGCCCGGGGGGGC
CGCGGCGTCGACGATGGTTGGTATCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12450:2114..2790+

>mRNA_Ecto-sp13_S_contig12450.2034.1 ID=mRNA_Ecto-sp13_S_contig12450.2034.1|Name=mRNA_Ecto-sp13_S_contig12450.2034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12450:2114..2790+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCGCCTTCTCCGCGGCCCTGGCCGGAGTCCCATTCTCGGCAGCGGC
GTCGTCAGGGGAGAAAGACGGCGACGGCCCTGATACTGCTGGTGGTACTA
GTGCCGCTGCGACAGCTCCGGTTGCCGCGGGAGACGAAAAGAGCGCAGCG
GCGGTGGAAGGGGGTGGCGCGCACGGCCTGCCGGCGGGAGGGCATCATCA
TCCCGAGACCGCGGCGAAGGCGGTGGTGTCCACCACGGACGGCGTTGACG
GGGGTCACGGGCGGGTCGGCGCTGAGCCGCCCGCAGCAGACGTCGAGACG
GCCGGAGAAGGCGGCGGCGGCGGTGGCGGCGGGGCGGCGGCTCTTCGGAG
GCACGCGGGCGGCACGGATGACAACGATGATGACGATGACGACGACGACG
ACGATGACGATGAAGATGAAGATGAAGATGACACGGAGAGCGTGCTGAAC
CAGCCGCCGGTGCTGTCGTCCTCTCTCGGGGTAGACTTCGGGGAGTCGCC
GCCGTTCTTGCAGCTCAGCAAGGGGAAGAACTCCGCCCCCGCCGCCGCCG
CCGTAGAAGGGAGCGGGATGACTGCGGCGGCGGCGGCTGCTGCTGCCGGG
AAGAAGAAGCAGGCTGGTGGAGCGGCAACGGCTGGCGCGCCCGGGGGGGC
CGCGGCGTCGACGATGGTTGGTATC
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