mRNA_Ecto-sp13_S_contig88484.20339.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88484.20339.1
Unique NamemRNA_Ecto-sp13_S_contig88484.20339.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig88484.20339.1 vs. uniprot
Match: D8LCG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG4_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.940e-23
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 LSIAPRGCTVEKVLWHGPTALVALLYRDGIGVSRVDVHQVDVGKRVTTPV 150
            LSIAPRGCTVEKVLWHGPTALVALLY DGIGVSRVDVHQVDVG+RVT P+
Sbjct:  293 LSIAPRGCTVEKVLWHGPTALVALLYHDGIGVSRVDVHQVDVGRRVTIPL 342
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BLAST of mRNA_Ecto-sp13_S_contig88484.20339.1 vs. uniprot
Match: A0A6H5KVT0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.650e-23
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 LSIAPRGCTVEKVLWHGPTALVALLYRDGIGVSRVDVHQVDVGKRVTTPV 150
            LSIAPRGCTVEKVLWHGPTALVALLY DGIGVSRVDVHQVDVG+R+T P+
Sbjct:  329 LSIAPRGCTVEKVLWHGPTALVALLYHDGIGVSRVDVHQVDVGRRITIPL 378
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88484.20339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCG4_ECTSI1.940e-2392.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVT0_9PHAE2.650e-2390.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88484contigEcto-sp13_S_contig88484:49..204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score100.5
Seed ortholog evalue2.4e-19
Seed eggNOG ortholog2880.D8LCG4
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2EAUK@1,2SH19@2759
Cds size156
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.8588767-CDS-Ecto-sp13_S_contig88484:48..2041681464156.8588767-CDS-Ecto-sp13_S_contig88484:48..204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88484 49..204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88484.20339.1prot_Ecto-sp13_S_contig88484.20339.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88484 49..204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88484.20339.1

>prot_Ecto-sp13_S_contig88484.20339.1 ID=prot_Ecto-sp13_S_contig88484.20339.1|Name=mRNA_Ecto-sp13_S_contig88484.20339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
LSIAPRGCTVEKVLWHGPTALVALLYRDGIGVSRVDVHQVDVGKRVTTPV
RG
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mRNA from alignment at Ecto-sp13_S_contig88484:49..204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88484.20339.1 ID=mRNA_Ecto-sp13_S_contig88484.20339.1|Name=mRNA_Ecto-sp13_S_contig88484.20339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88484:49..204+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCCATAGCACCGAGGGGCTGCACGGTCGAGAAAGTGTTGTGGCACGG
GCCGACGGCGCTGGTGGCGCTGCTGTATCGCGACGGGATAGGGGTGTCGA
GGGTCGACGTACACCAGGTCGACGTTGGGAAGAGGGTCACCACACCGGTG
CGTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88484:49..204+

>mRNA_Ecto-sp13_S_contig88484.20339.1 ID=mRNA_Ecto-sp13_S_contig88484.20339.1|Name=mRNA_Ecto-sp13_S_contig88484.20339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88484:49..204+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCCATAGCACCGAGGGGCTGCACGGTCGAGAAAGTGTTGTGGCACGG
GCCGACGGCGCTGGTGGCGCTGCTGTATCGCGACGGGATAGGGGTGTCGA
GGGTCGACGTACACCAGGTCGACGTTGGGAAGAGGGTCACCACACCGGTG
CGTGGA
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