mRNA_Ecto-sp13_S_contig8848.20338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8848.20338.1
Unique NamemRNA_Ecto-sp13_S_contig8848.20338.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8848.20338.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.520e-35
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:  175 MGVAGLTGYINKNLRGAVAMEDLREGDTLAIDGSGWMFHLLEGQRVDHGGDYDLLHKTVVRKVGRLRQ 378
            MGVAGLTGYINKNLRGAVAMEDL+EGDTLAIDGSGWMFHLLEGQRVDHGGDYDLLHKTVVR+VGRLRQ
Sbjct:    1 MGVAGLTGYINKNLRGAVAMEDLQEGDTLAIDGSGWMFHLLEGQRVDHGGDYDLLHKTVVREVGRLRQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8848.20338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM0_ECTSI2.520e-3597.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8848contigEcto-sp13_S_contig8848:3591..6079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score138.7
Seed ortholog evalue1.9e-30
Seed eggNOG ortholog2880.D8LSM0
Preferred nameYTHDC2
Model size380
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.positive regulation of polysome binding
EggNOG OGsCOG1643@1,KOG0921@2759
EC3.6.4.13
Cds size378
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.8239632-CDS-Ecto-sp13_S_contig8848:3590..38391681464156.8239632-CDS-Ecto-sp13_S_contig8848:3590..3839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8848 3591..3839 +
1681464156.8349226-CDS-Ecto-sp13_S_contig8848:5949..60781681464156.8349226-CDS-Ecto-sp13_S_contig8848:5949..6078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8848 5950..6078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8848.20338.1prot_Ecto-sp13_S_contig8848.20338.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8848 3591..6078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8848.20338.1

>prot_Ecto-sp13_S_contig8848.20338.1 ID=prot_Ecto-sp13_S_contig8848.20338.1|Name=mRNA_Ecto-sp13_S_contig8848.20338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
LRLGGGRSSSCCNSSRRSCGAEAGGIGSRARFGTPPPPLPQPTTLLGRRP
AGSRGQCLMGVAGLTGYINKNLRGAVAMEDLREGDTLAIDGSGWMFHLLE
GQRVDHGGDYDLLHKTVVRKVGRLRQ
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mRNA from alignment at Ecto-sp13_S_contig8848:3591..6079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8848.20338.1 ID=mRNA_Ecto-sp13_S_contig8848.20338.1|Name=mRNA_Ecto-sp13_S_contig8848.20338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8848:3591..6079+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCGACTCGGCGGCGGCCGCAGCAGCAGCTGCTGCAACAGTAGCAGAAG
AAGCTGCGGCGCTGAGGCGGGGGGTATCGGGAGCAGGGCGCGGTTCGGGA
CGCCGCCGCCGCCGCTGCCGCAGCCCACGACGCTGCTGGGTCGTCGTCCT
GCTGGGAGTAGAGGGCAGTGTCTCATGGGTGTCGCCGGTCTGACGGGGTA
CATCAACAAGAACCTGCGGGGGGCGGTAGCCATGGAGGACCTGCGAGAGG
TGAGAGCTATCAGCTTGCAGCATGGGCAACTCTCTTTTAGGAGACGATGG
TACATTGCACAGCAAGGTGCTGCTGCTGCTGTCCGGACTGTACTGCAAGT
GTGTTCCTACGCATACGGGTCTTTCCTGATATGTCATGATCGCCCAACGG
GCGGTGTGTACGTATCACTACAATCACGACCGGGTCGTGTTGCCCCTGCT
CGTCAGTTGAGCACGCCCGGCGCAGCGCACACCGGTGGTAAGTATGGAGT
TCAACACCGCAAACGAAGCCAAGAGCGAAATCGTGCATCCCACACAAAGC
TCTCCACAAGCCCGTGAAGTGCTGCCGTACAGTACTACACAGCAAACTGA
CTTCATAATCCACCGTCTGTGCAACAAGGAACACAAAAACGTCATTTTAA
CAGTAGTCGGTCCAACCAGCGCAACTTGTGCTTCCGCTCGCCCTCTGAAA
CGGGCAGGCGACAGTTCCGCGATAGCGTCTTGTGACCACGGCAGAGCCAA
GTTGAGAAAACGTTGAGTGCGTGCAAAGAGGCCAGAAACCCCGTCGAGTT
GAATCAAATTTGTTCACCTTGCAGTATGTACTGCTGTGAAAACCAGGGCA
CCTCGTGTACAGTACGGGTCCGGAGATAAGATACGTCAAAATCAGGTCGA
GGCTCAATCCCTTATTTTGGGTCGAAGAACCAGCCCAAGGCGTCCATTTT
CTTGGAGGGTGTTTCTTGTTCCTTTGGACTGTCGCCTCCTCCTGAGTCTC
TCCTTCTAGATTTTCTTTATTCTGGCTAAGGATACAACACACCAAACATT
CATGCAGCATTGACCAGAAAGCTTGGTGTGGCGAACATTGCAGTATACCA
GCAGTGGGTGAAGGAGCCTCGGAGGCGCGGAGTAGCCAGCGCGCTAGCGC
GGCGCTAGCGTGAAGGGAGGCGGGGGGGGCTCGACGGAAAAAAACTGTTT
AGCTAGGTGCAGGTGGGGTGGGAGCACGGAAGGAGCAGCAGTGGGACGTT
TCGTATTGGACACGCTCCCCAGCAACCCTTGTTTCTTACGTATTGGGGGT
ATCGCAAGATGAAGTTTCTTATTGAGATGTTTCTTATGCTGTGGCCGAGA
ACGAGCTGTGTTTCTTACAAAAAAAGTTGAGCCTTTCTTTCTTAACGGAT
TTTTCTTAATTGCAGACCCGTACTGTATTCCACGCGCAAGAATTACCCCG
ACGACGTGATAAAAAAAAAGTACGTACTACACAACAGTCGCAGACGCTCT
TTGTAACGCAGGAGTGGCGAAGCGGCACGCAGATAACGGTGTCATTTACC
TCTTGTATCTAGATCAGCAGCAGCTGTTCTTCGGGCTTTCCCCTCGGTTT
TCCATGAACGCGTTAAATAAAGGGTGTTGTGTGTTGCGCAGTCTTACCTG
TCACACAGGCGCGGAGATGCCTCCGTGGAGCGCACCGAGATTTAGGAGTT
TTGTCCGGAGGGGCACTTGCGTTGACAACAGCCCGCGTGAGCGCGCACGT
GCATCCGCAACAACGCGACCAGACCAGCCACCCCCATATTCCCCGAGCGG
CTGCGGTCTCGCCCTCGTCGAAGCCACCGGAAACCTGACGGAAGTCATCC
GAAGCCTCGTGGAAGCCACCCGACACGAATACCTAAAGAAGAGCAGTTCG
CGAGTTGTTGAAACCACATGAGGTTCTGAAGCGTGCGTTTAGGCACTCGT
GACAGGCGGTTCAAGGATGTTTTCTTCTCCACTTCTCTATTTTTGAATGT
TTTTGTTTTGTGGCAGGCAGCTTCCTGTGTGGTACCACCGTTTTTCTCAC
GAGGCCGGCGTTGCCCCGACGGTGGAGGTCGAATTGGAACGTTTTGCGTG
TTTGTCGCCTGCAAACGCGAGTCAAGCCTCTGGTTGTTCGACTTACTTTC
GAGGGACGTTTTTTTGTTTATTCGTACGTTTGTTGCGGTAATTTTCATGG
GCCACTCCTTACATCGGCTAACCAATGCAAGCATACGTCATCCTACACCA
ATGACGAATTATACGCAAGTCAGTGTTCATACACCCGGATAAGCAAATCA
GACGCGAACACGCTCATTTGGTTTATGCGCACGCTCGTGCCGTCTGCTCG
TGCGTCAAGGGCGACACGCTGGCGATCGATGGATCGGGATGGATGTTCCA
CCTCCTGGAGGGGCAAAGAGTCGACCACGGGGGCGACTACGACCTCTTGC
ACAAGACCGTCGTTCGCAAGGTCGGCCGGCTGCGGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8848:3591..6079+

>mRNA_Ecto-sp13_S_contig8848.20338.1 ID=mRNA_Ecto-sp13_S_contig8848.20338.1|Name=mRNA_Ecto-sp13_S_contig8848.20338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8848:3591..6079+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCGACTCGGCGGCGGCCGCAGCAGCAGCTGCTGCAACAGTAGCAGAAG
AAGCTGCGGCGCTGAGGCGGGGGGTATCGGGAGCAGGGCGCGGTTCGGGA
CGCCGCCGCCGCCGCTGCCGCAGCCCACGACGCTGCTGGGTCGTCGTCCT
GCTGGGAGTAGAGGGCAGTGTCTCATGGGTGTCGCCGGTCTGACGGGGTA
CATCAACAAGAACCTGCGGGGGGCGGTAGCCATGGAGGACCTGCGAGAGG
GCGACACGCTGGCGATCGATGGATCGGGATGGATGTTCCACCTCCTGGAG
GGGCAAAGAGTCGACCACGGGGGCGACTACGACCTCTTGCACAAGACCGT
CGTTCGCAAGGTCGGCCGGCTGCGGCAG
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