mRNA_Ecto-sp13_S_contig1245.2033.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1245.2033.1
Unique NamemRNA_Ecto-sp13_S_contig1245.2033.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: A0A6H5K880_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K880_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.840e-49
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSNTNPGDFAVDVVSVDNTSK 255
            AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPS+TNPGDFAVDVVSVD TSK
Sbjct:  154 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSHTNPGDFAVDVVSVDYTSK 238
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: D8LKI7_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI7_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.750e-47
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSNTNPGDFAVDVVSVDNTSK 255
            AERVMATLRQLAQDGHTVICSIHQPRSSI+GMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSNTNPGDFAVDVVSVD TSK
Sbjct:  205 AERVMATLRQLAQDGHTVICSIHQPRSSIFGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSNTNPGDFAVDVVSVDYTSK 289
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: I0Z251_COCSC (ABC transporter domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z251_COCSC)

HSP 1 Score: 114 bits (284), Expect = 1.390e-27
Identity = 49/84 (58.33%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSNTNPGDFAVDVVSVDNTS 252
            AE+VM TL+ LA +G TV+CSIHQPRSSI+ MFDD+LLLSEG++++ GPAK + S+F S GYP+P+N NP +F  D++S+D+++
Sbjct:  248 AEKVMQTLKDLANEGKTVVCSIHQPRSSIFSMFDDLLLLSEGQIVYSGPAKGVISHFESLGYPIPANYNPAEFIADLISIDSSA 331
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: A0A8J9REU9_9CHLO (Protein white n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REU9_9CHLO)

HSP 1 Score: 112 bits (279), Expect = 6.640e-27
Identity = 49/84 (58.33%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSNTNPGDFAVDVVSVDNTS 252
            AE+VM TL+ LA DG TV+CSIHQPRSSI+ MFDD+LLLSEG +++ GPAK + S+F S G+P+P+N NP +F  D++S++++S
Sbjct:  249 AEKVMQTLKDLAMDGKTVVCSIHQPRSSIFSMFDDLLLLSEGSIIYSGPAKGVISHFESLGHPIPANYNPAEFIADLISINSSS 332
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: A0A8J5V418_ZIZPA (AAA domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5V418_ZIZPA)

HSP 1 Score: 111 bits (278), Expect = 9.090e-27
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIG-SYFRSKGYPMPSNTNPGDFAVDVVSVDNTS 252
            AE+VM TLRQLA+DGHTVICSIHQPR S+YG FDD+ LLSEG V++ GPAK    +YF S GY  P + NP +F  D++SVD +S
Sbjct:  237 AEKVMETLRQLAEDGHTVICSIHQPRGSVYGKFDDIALLSEGEVVYMGPAKEEPLTYFASLGYQCPDHVNPAEFLADLISVDYSS 321
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: A0A843VVE1_COLES (ABC transporter domain-containing protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VVE1_COLES)

HSP 1 Score: 110 bits (274), Expect = 1.420e-26
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIG-SYFRSKGYPMPSNTNPGDFAVDVVSVDNTS 252
            AE+VM TL+QLAQDGHTVICSIHQPR S+Y  FDD++LLSEG V++ GPAK    SYF + GY  P + NP +F  D++S+D TS
Sbjct:  259 AEKVMETLQQLAQDGHTVICSIHQPRGSVYAKFDDIILLSEGAVVYMGPAKEEPLSYFANFGYNCPDHVNPAEFLADLISIDYTS 343
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: A0A804UFI4_MAIZE (ABC transporter domain-containing protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804UFI4_MAIZE)

HSP 1 Score: 109 bits (272), Expect = 1.580e-26
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIG-SYFRSKGYPMPSNTNPGDFAVDVVSVD 243
            AE+VM TLRQLAQDGHTVICSIHQPR S+YG FDD++LLS+G  ++ GPAK    +YF S GY  P + NP +F  D++S+D
Sbjct:  239 AEKVMETLRQLAQDGHTVICSIHQPRGSVYGKFDDIVLLSDGETVYMGPAKEEPLTYFSSLGYQCPDHMNPAEFLADLISID 320
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: A0A833R2I4_9POAL (ABC transporter G family member 7 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R2I4_9POAL)

HSP 1 Score: 110 bits (276), Expect = 1.710e-26
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIG-SYFRSKGYPMPSNTNPGDFAVDVVSVDNTS 252
            AE+VM TLRQLA+DGHTVICSIHQPRSS+Y  FDD++LLSEG V++ GPAK    SYF + GY  P + NP +F  D++SVD +S
Sbjct:  240 AEKVMETLRQLAEDGHTVICSIHQPRSSVYAKFDDIILLSEGLVVYAGPAKEEPLSYFATLGYECPEHVNPAEFLADLISVDYSS 324
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: A0A453DQQ0_AEGTS (ABC transporter domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DQQ0_AEGTS)

HSP 1 Score: 107 bits (268), Expect = 2.630e-26
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIG-SYFRSKGYPMPSNTNPGDFAVDVVSVDNTS 252
            AE+VM TLRQLA+DGHTVICSIHQPR S+Y  FDD++LLSEG V++ GPAK     YF S GY  P + NP +F  D++S D +S
Sbjct:  184 AEKVMETLRQLAEDGHTVICSIHQPRGSVYSKFDDIVLLSEGEVVYMGPAKEEPLKYFASLGYQCPDHENPAEFLADLISTDYSS 268
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BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Match: A0A804QHV1_MAIZE (ABC transporter domain-containing protein n=10 Tax=Panicoideae TaxID=147369 RepID=A0A804QHV1_MAIZE)

HSP 1 Score: 109 bits (272), Expect = 5.960e-26
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIG-SYFRSKGYPMPSNTNPGDFAVDVVSVD 243
            AE+VM TLRQLAQDGHTVICSIHQPR S+YG FDD++LLS+G  ++ GPAK    +YF S GY  P + NP +F  D++S+D
Sbjct:  239 AEKVMETLRQLAQDGHTVICSIHQPRGSVYGKFDDIVLLSDGETVYMGPAKEEPLTYFSSLGYQCPDHMNPAEFLADLISID 320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1245.2033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K880_9PHAE4.840e-4997.65ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LKI7_ECTSI1.750e-4797.65White-brown-complex ABC transporter family (Partia... [more]
I0Z251_COCSC1.390e-2758.33ABC transporter domain-containing protein n=1 Tax=... [more]
A0A8J9REU9_9CHLO6.640e-2758.33Protein white n=1 Tax=Coccomyxa sp. Obi TaxID=2315... [more]
A0A8J5V418_ZIZPA9.090e-2762.35AAA domain-containing protein n=1 Tax=Zizania palu... [more]
A0A843VVE1_COLES1.420e-2661.18ABC transporter domain-containing protein (Fragmen... [more]
A0A804UFI4_MAIZE1.580e-2660.98ABC transporter domain-containing protein n=2 Tax=... [more]
A0A833R2I4_9POAL1.710e-2662.35ABC transporter G family member 7 n=1 Tax=Carex li... [more]
A0A453DQQ0_AEGTS2.630e-2660.00ABC transporter domain-containing protein n=2 Tax=... [more]
A0A804QHV1_MAIZE5.960e-2660.98ABC transporter domain-containing protein n=10 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1245contigEcto-sp13_S_contig1245:17891..18145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score162.9
Seed ortholog evalue6.1e-38
Seed eggNOG ortholog2880.D8LKI7
Model size255
KEGG koko:K21396
KEGG TC3.A.1.204
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0031224,GO:0031967,GO:0031975,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944
Exons1
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
Cds size243
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462663.085704-UTR-Ecto-sp13_S_contig1245:17890..179021681462663.085704-UTR-Ecto-sp13_S_contig1245:17890..17902Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1245 17891..17902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462663.09985-CDS-Ecto-sp13_S_contig1245:17902..181451681462663.09985-CDS-Ecto-sp13_S_contig1245:17902..18145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1245 17903..18145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1245.2033.1prot_Ecto-sp13_S_contig1245.2033.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1245 17903..18145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1245.2033.1

>prot_Ecto-sp13_S_contig1245.2033.1 ID=prot_Ecto-sp13_S_contig1245.2033.1|Name=mRNA_Ecto-sp13_S_contig1245.2033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIG
SYFRSKGYPMPSNTNPGDFAVDVVSVDNTSK
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mRNA from alignment at Ecto-sp13_S_contig1245:17891..18145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1245.2033.1 ID=mRNA_Ecto-sp13_S_contig1245.2033.1|Name=mRNA_Ecto-sp13_S_contig1245.2033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1245:17891..18145+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGCGGGTCATGGCCACCCTCCGGCAGCTGGCCCAGGACGGACACAC
GGTGATCTGCTCGATCCACCAGCCCAGGAGTTCCATATACGGGATGTTCG
ACGACGTCCTGTTGCTCAGCGAGGGCCGGGTCATGTTCCAGGGGCCTGCG
AAGCGGATCGGGTCGTACTTCCGGTCGAAGGGGTACCCCATGCCATCCAA
TACGAACCCCGGAGACTTCGCTGTCGACGTGGTTTCGGTGGATAACACGT
CTAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1245:17891..18145+

>mRNA_Ecto-sp13_S_contig1245.2033.1 ID=mRNA_Ecto-sp13_S_contig1245.2033.1|Name=mRNA_Ecto-sp13_S_contig1245.2033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1245:17891..18145+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCACCCTCCGGCAGCTGGCCCAGGACGGACACACGGTGATCTGCTC
GATCCACCAGCCCAGGAGTTCCATATACGGGATGTTCGACGACGTCCTGT
TGCTCAGCGAGGGCCGGGTCATGTTCCAGGGGCCTGCGAAGCGGATCGGG
TCGTACTTCCGGTCGAAGGGGTACCCCATGCCATCCAATACGAACCCCGG
AGACTTCGCTGTCGACGTGGTTTCGGTGGATAACACGTCTAAG
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