mRNA_Ecto-sp13_S_contig8835.20324.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8835.20324.1
Unique NamemRNA_Ecto-sp13_S_contig8835.20324.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8835.20324.1 vs. uniprot
Match: D7G391_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G391_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 3.500e-118
Identity = 207/234 (88.46%), Postives = 212/234 (90.60%), Query Frame = 1 
Query:  109 IDIPVDGAAGRAGKTRALGGSGGGPRDEDTSRPAAGEEGSVTAGGVSVGPGTTAASGRKRISFPRSAFLGFSRSAQRSMSSYSYVQHDPASRAGGVGDGGGDGVGGVRASQSTTEAEADPGLAVDAGRGTLPATSVDCAGGGDGKASGSPKANRAAPRDNGGDGDVQYVNFNGHGGRAGGVVALRRGDGVAAVEIEGDRSASTTGYSSSLKPLEAEQDEEEAKRKMDALLLRSR 810
            +DI V GA GRA KTRALGGSGGGPRDE TSRPAAGE GS TAG  SVGPGTTAASGRKRISFPRSAFLGFSRSAQRSMSSYS+VQHDPASRAGGVG G GDG GGVRASQST  AEA PGLAVDAGRGTLPATSVD AGGG+ KA+GSPK NRAAPRDNGGDGDVQYVNFNGHGGRAGGVVALRRGDGVAAVEIEGDRS STTGYSS LKPL+AEQDEEEAKRKMDALLL  R
Sbjct:    1 MDILVGGAPGRAEKTRALGGSGGGPRDEGTSRPAAGEGGSATAGSGSVGPGTTAASGRKRISFPRSAFLGFSRSAQRSMSSYSFVQHDPASRAGGVGGGDGDGAGGVRASQSTPAAEAGPGLAVDAGRGTLPATSVDFAGGGEEKANGSPKDNRAAPRDNGGDGDVQYVNFNGHGGRAGGVVALRRGDGVAAVEIEGDRSVSTTGYSSFLKPLQAEQDEEEAKRKMDALLLSGR 234
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BLAST of mRNA_Ecto-sp13_S_contig8835.20324.1 vs. uniprot
Match: A0A6H5JTZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ9_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 5.950e-117
Identity = 241/284 (84.86%), Postives = 250/284 (88.03%), Query Frame = 1 
Query:    1 GVVGVVDDGGALSSNGDGIDGDXXXXXXXVVDVTSSIDIPVDGAAGRAGKTRALGGSGGGPRDEDTSRPAAGEEGSVTAGGVSVGPGTTAASGRKRISFPRSAFLGFSRSAQRSMSSYSYVQHDPASRAGGVGDGGGDGVGGVRASQSTTEAEADPGLAVDAGRGTLPATSVDCAGGGDGKASGSPKANRAAPRDNGGDGDVQYVNFNGHGGRAGGVVALRRGDGVAAVEIEGDRSASTTGYSSSLKPLEAEQDEEEAKRKMDALLLRSRVHTHVNPVVPAAAG 852
            GV+GVVD GG L S+ DG    XXXXXXXVVDVTS +DIP+ GA GRAGKTR LGGSGGGPR E TSRPAAGE GS TAGGVSVGPGTTAASGRKRISFP S FLGFSRSAQRSMSSYS+VQHDPASRAGGVG       GGVRASQSTT AE DPGLAVDAGRGTL ATSVD AGGGDGKA+GSPK NRAAPR NGGDGDVQYVNFNGH GRAGGVVALRRGDGVAAVEIEGDRS ++TGYSSSLKPL+AEQD EEAKRKMDALLLRSRVHTHVNPVVPAAAG
Sbjct: 1622 GVIGVVD-GGELPSSEDGXXX-XXXXXXXVVDVTSLMDIPMGGAEGRAGKTRTLGGSGGGPRGEGTSRPAAGEGGSATAGGVSVGPGTTAASGRKRISFPLSTFLGFSRSAQRSMSSYSFVQHDPASRAGGVGXXXXXXXGGVRASQSTTAAEEDPGLAVDAGRGTLMATSVDFAGGGDGKANGSPKTNRAAPRGNGGDGDVQYVNFNGHCGRAGGVVALRRGDGVAAVEIEGDRSVASTGYSSSLKPLQAEQDGEEAKRKMDALLLRSRVHTHVNPVVPAAAG 1903
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8835.20324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G391_ECTSI3.500e-11888.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTZ9_9PHAE5.950e-11784.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8835contigEcto-sp13_S_contig8835:959..5465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2067
Hectar predicted targeting categoryother localisation
Exons5
Cds size570
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8835.20324.1prot_Ecto-sp13_S_contig8835.20324.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8835 2114..4719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.6446395-UTR-Ecto-sp13_S_contig8835:958..21131681464155.6446395-UTR-Ecto-sp13_S_contig8835:958..2113Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8835 959..2113 -
1681464155.7196465-UTR-Ecto-sp13_S_contig8835:4719..47231681464155.7196465-UTR-Ecto-sp13_S_contig8835:4719..4723Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8835 4720..4723 -
1681464155.7291129-UTR-Ecto-sp13_S_contig8835:5127..54651681464155.7291129-UTR-Ecto-sp13_S_contig8835:5127..5465Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8835 5128..5465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.6619866-CDS-Ecto-sp13_S_contig8835:2113..22241681464155.6619866-CDS-Ecto-sp13_S_contig8835:2113..2224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8835 2114..2224 -
1681464155.6789484-CDS-Ecto-sp13_S_contig8835:2906..29851681464155.6789484-CDS-Ecto-sp13_S_contig8835:2906..2985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8835 2907..2985 -
1681464155.6956103-CDS-Ecto-sp13_S_contig8835:3672..39021681464155.6956103-CDS-Ecto-sp13_S_contig8835:3672..3902Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8835 3673..3902 -
1681464155.7081203-CDS-Ecto-sp13_S_contig8835:4569..47191681464155.7081203-CDS-Ecto-sp13_S_contig8835:4569..4719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8835 4570..4719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8835.20324.1

>prot_Ecto-sp13_S_contig8835.20324.1 ID=prot_Ecto-sp13_S_contig8835.20324.1|Name=mRNA_Ecto-sp13_S_contig8835.20324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
MSSYSYVQHDPASRAGGVGDGGGDGVGGVRASQSTTEAEADPGLAVDAGR
GTLPATSVDCAGGGDGKASGSPKANRAAPRDNGGDGDVQYVNFNGHGGRA
GGVVALRRGDGVAAVEIEGDRSASTTGYSSSLKPLEAEQDEEEAKRKMDA
LLLRSRVHTHVNPVVPAAAGASGEGEEIGGGSGAVEGAE*
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mRNA from alignment at Ecto-sp13_S_contig8835:959..5465-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8835.20324.1 ID=mRNA_Ecto-sp13_S_contig8835.20324.1|Name=mRNA_Ecto-sp13_S_contig8835.20324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8835:959..5465- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTGGTCGGCGTCGTCGACGACGGCGGAGCACTCTCCAGCAACGGGGA
CGGCATCGATGGCGACGAAGACGATGACGACGACGACGTTGTGGATGTCA
CGAGTTCGATAGATATTCCCGTCGACGGAGCAGCAGGACGGGCCGGGAAA
ACGCGGGCGCTAGGCGGAAGTGGTGGTGGCCCTCGTGATGAAGACACCAG
CCGTCCTGCCGCCGGCGAGGAAGGAAGTGTGACAGCGGGCGGCGTCAGCG
TCGGACCGGGAACAACGGCGGCCAGCGGAAGGAAGCGGATTAGTTTTCCT
CGCTCCGCTTTCCTGGGATTCAGCCGCAGCGCGCAGAGGTTGGAAAAACT
AGACGAGTCAGATAATCCGAGGAAGTCGGGGAATATTCCCGGGATAGGTG
CCAAGGGATTTAGGGAGGTGTGCGTGTCATTCACGATAGGTCGTCAACGT
GGTATCTTACGGGCCTCGATAGCTTCACGAGAGGCGAGCCTCTACCCCGA
TCCGAGACTAACAGCACCAACGCGGCATGATTATAATGCCGCTGCCGTGT
CCTCAAGCATATTCTTTCACTCCGACCTCTGACGTCACTTTCTGAGATTT
GCACGTAGGCAGCAGGCCACGCTCTGCTCTTAGAGGGGTACCCACGAGAT
GGGTAGCTAATCTTTTCGACGAATAACCAACCTTCTCACCCGCTCGTTGG
TTTTCCTGGCCGCCCGCTCCCGTGCATCACTCACTCACCCAGATCGATGA
GCAGCTACTCATATGTTCAGCACGACCCGGCTAGCCGGGCTGGTGGAGTT
GGAGATGGAGGTGGCGACGGTGTTGGGGGCGTTCGTGCCTCCCAGTCGAC
AACCGAGGCGGAGGCAGACCCGGGACTTGCCGTTGATGCGGGCAGGGTGA
GCGGAGGCATACTTTCAAATCCTACCACCGTTATGTTTTCAGTTTCACCA
TGATTGTCCATGAAAAATTGTGCTAGGGGGAATACACGTCGGTTGGGTCG
TTCTTTTGCCGTTGATGATCCCACGACGGAGGGATACGGGCAACGCGTAC
TCCGAGAATCAGCCCTTGAGGAAACCACAGCTTATCAACTTAAAAAAAGG
CAAACAGGCAGCAGGGGGCATACCGCGGTCATTGCTACAAGTAGTTTCGC
AAGGTGGTTTGCATATCATCCGGGGTGAGTGTTAGGAACTTTGAACGTTC
TTTGCGTTTCACCCGCCTTGGCGTTCTAAAATCAATGTCATGCCATTGCC
TGTGCCCACTCTGGTTGGTGCTAGATCTAACCCTAAGAAAACAAACGAGC
TACACTTTAATGAAACCTCACAAACCCTCTAATGCCGCCAAGTATTTCTT
CGAAGAGACACTTGATGTAGAACGATCCTGCAGACCCGAGGGTCTCGATC
CAAGACCTGGAGATTACCCTTCAACAGATCATGGGTGCGTCGTACAGGCG
TTTTCCCTTTTACTCTTTGGTTCCTACTGCCGCAAAGCCAAATTGCGCCA
ACGAGACCCCGTCCTCGTCTCTCACAACCCCGGTACATTCTCTGGTCGGA
CCTCTCCGAGCAGGGGACGCTACCTGCGACATCTGTTGACTGCGCCGGCG
GCGGCGATGGAAAGGCGAGCGGCAGCCCCAAGGCCAATCGAGCAGCACCA
CGCGACAACGGCGGCGACGGCGACGTGCAATACGTCAACTTCAACGGCCA
CGGCGGCCGGGCCGGCGGCGTTGTTGCCCTCAGAAGGGGGGACGGCGTTG
CGGCAGTGGAGATAGAGGGCGACAGATCGGCGTCCACGACAGGGTAAGGT
TCACTGGCCATGTACCTAGGAAAACAACGCGAGACAATTTCCACGCTGCC
TCGGTCTGATCATATGGCCTGTGACGTTAATGTGAATTTGCCATGGCATG
TTCGAGACGAGGGGGGGCAGCGGTCGTGGGGAAAGCGGTGCGCCGTCTGA
GACACGCCGACAGCAAACATCATGATTTTTTTTAATGTATTTCACCGTCT
TTGAATCGTATGTTTTTCGTTCGTCGCCTTTGCAAGAGGCTCGTTGCTCG
GTTATCATGTGCTTGCCGTGCACGATGTCGTGGGCGGAAAAGTTCAGGCT
CGACGCCATCCATTGTGCCATGGGAGGGTCACCGATTTTTTCACCACGTA
CCTAATCTCGCTTTCCCAATCGGCGGTTCGTAATGGTCACAAGATAAGAC
TGCCACGCAGCACCTAGTGCCATGCACCGAATTTGGCCGTTGCGTGCCGT
TTCCCGGGCTGCAAAGGCGGGCAGGCACGCAAGGGTTTGGTAGTGCGTAG
GAAAACTACAGCATGTATGTTATCTGTCGACTAGGACAGGTCCCTACCAA
GCCGACAAACCCCTCGAGAATTGTTCAAGTAATGTGATATCCCTCCTCCG
TGCCTCCTGTGCTGCCTGATGTTCGATGCTGCCGTGTTGGGGTGAATCTG
ATTTCACCCTGGCCTTCGCTCGAAACTCAGATATTCCTCGTCCTTGAAGC
CTTTGGAAGCAGAACAGGACGAAGAAGAAGCGAAGCGGAAAATGGACGCC
TTACTATTGGTAAGTGCAATAGTAAATCCTTCACCTTAGCATGGCCTCGA
TTCACTAGGGACGAAGCAACTGGGATCGTCAGCGTCGCACTATGCTGTAA
ATTGACGTCGCACTGCTGTTGTGCTTACTTTCGCGGTTGCAACGCTTGTT
CACCAATTAAGCTCAAACTTGACAACCTCTAAATATATTCCGGACTGTGG
CTCGTCCCAACAACTGCGCCGATATGTTAATAGAGCGGGCGGAGGGTGCT
GGTCTCAGGTCCCCTTTCGGAGCATCGATCCCGTTTGAGATTTTTGTCTT
GCGGGAACGTTGACGACGTCGGTATTTGAAAGTTTCGAGGAAAATCTTGT
CGACAACTATAATAGCAGTCTGGCAGGTGGAGATAGGGTGGCGTTGGAAG
AAGGTGTTGTCGTCCAGGTGGCTTTCAAAGTCCGACCCCTCCCCGACGAT
GCGAAACACGCCGACTGTTCATGTATTGTCTTTCAGGCATATCATTGCGT
TTGCATGTGTGTCATGGAGTATCGGTAGTCCAAGGGGGGCTTCGTAGGCA
GTAACGGAAGAGTTGCGTCCCTCAAATTCCTGGCGCAGCGGAATCACATG
TTCCGACACGCTCAGCTTCGCTCATATCCAAACATTCCTCAAGCAATAAA
AGTATCCCGTCCTGGATCAATCTCGTCTCTCTCGCTTGTAGAGGAGCCGC
GTGCATACGCATGTGAATCCCGTGGTACCGGCGGCAGCCGGCGCAAGTGG
AGAGGGAGAAGAAATAGGAGGAGGAAGCGGAGCAGTCGAGGGAGCGGAAT
AACTATCCATGACGGGAATCATCTCTGGGATCAGCGGCCGCTGTCGGTTG
GTTGGTTTTGCATTGTGCGTGATCGCCACGGGACCACGAAATTGGGAATG
AAAAAAGAATGTCGTACAAGTCGTGTGCGGGTAAAATTATGGCGTTCGTT
GTTCGTCAGGTACACGTGCTGCGATTCCCAGGGTAGATGGCGGTGCGCCA
CGGAGATCCTTAAGTTCGTGTTGCATCTTCGGGGGGTATTGACAACCAAG
GAACGTGAACTTCACAAAACTTTTCGTGTTCTCGGGTTCAGATAGTGGTC
CACTATGGTGCACCAGCCCAACCAAGTTACTCGCTGTTGTTGGAGCTGTT
GTCTGTGAAGTACCCAGGCGTTTTGCCCGTAATCCCCAGCGACACATGTC
ACCGCAACGAGACTACGTCGGGCCTGGCACTGGTGGACGAGCGCCGAAGC
GACAAGAGCGGGGGCTGACATTTTCAGTACTTGGGTCGTTGGAAGCATGG
GAAGCTTGGGAGCAGGACATGTTAGGGACATGGAAAATCCCTAAGACCCT
GTACGTCTGAGCGAGGACTGCCCACCGAAAGTTTCATGTCTAACCTCGTC
ATGCTAGGAATCCATTTCCTTCGTTGGAAACAAGGACAGACTTCTACTCA
TTCCGTAGATCTTGTTTTCCGACTTCAAACAGTTTTAGCCGCTTGTAAAA
ACGTTGCATGTGGACTCCGAAGATGTAGATCGCTTCACTCTACAGCGGCG
GACCCGGCTACATATGGTTCAGTTCGCGTTGATCGGGACGGCCTGTTGTT
ATTCGATTCCAGTTGCCGTGGTGTACTGGTACAAACATACTTCTCACCCA
TCTGTCATGGGAGATGGGCGTGTTAGTGAGAGGGCGCACCGGATTCCGAG
TAGCCGTTCAGTGATGTATTGCTGTGGTGCTGTGCAGGCCTCTATTTCGA
GGTGGCTTGATACAGTAATAACCGGTATCGCGCCAGGTGTCAGGTAGTAG
TAAACGCTGCCATTTCCAGCCGAGGACGCGGCACAGTAACCTGCCGTAGG
ACCGTTTTCTGGATCGCCTTGCCGTCGAGCGGGCGGGTGGAATGCACCCA
ATCAAGCGTTTTCTCCTCCCTTTTCTGGTTCAACGTGCTGTAGATACTGT
ATCGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8835:959..5465-

>mRNA_Ecto-sp13_S_contig8835.20324.1 ID=mRNA_Ecto-sp13_S_contig8835.20324.1|Name=mRNA_Ecto-sp13_S_contig8835.20324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8835:959..5465- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGCTACTCATATGTTCAGCACGACCCGGCTAGCCGGGCTGGTGG
AGTTGGAGATGGAGGTGGCGACGGTGTTGGGGGCGTTCGTGCCTCCCAGT
CGACAACCGAGGCGGAGGCAGACCCGGGACTTGCCGTTGATGCGGGCAGG
GGGACGCTACCTGCGACATCTGTTGACTGCGCCGGCGGCGGCGATGGAAA
GGCGAGCGGCAGCCCCAAGGCCAATCGAGCAGCACCACGCGACAACGGCG
GCGACGGCGACGTGCAATACGTCAACTTCAACGGCCACGGCGGCCGGGCC
GGCGGCGTTGTTGCCCTCAGAAGGGGGGACGGCGTTGCGGCAGTGGAGAT
AGAGGGCGACAGATCGGCGTCCACGACAGGATATTCCTCGTCCTTGAAGC
CTTTGGAAGCAGAACAGGACGAAGAAGAAGCGAAGCGGAAAATGGACGCC
TTACTATTGAGGAGCCGCGTGCATACGCATGTGAATCCCGTGGTACCGGC
GGCAGCCGGCGCAAGTGGAGAGGGAGAAGAAATAGGAGGAGGAAGCGGAG
CAGTCGAGGGAGCGGAATAA
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