mRNA_Ecto-sp13_S_contig1245.2032.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: D8LKI7_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI7_ECTSI) HSP 1 Score: 359 bits (921), Expect = 5.970e-118 Identity = 194/213 (91.08%), Postives = 199/213 (93.43%), Query Frame = 1
Query: 1 MLLPRVLQLLIASSFLFSTTSAVDKLDVEWKDVSFSVGRGKKKAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGAERAPDQEQASAFLAWHAFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQA 639
MLLPRVL LLIASS LFSTTSAVDKLDVEWKDVS SVGR KK AILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQ+PYSK+T+LHGTLTVGGAERAPDQEQA FVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVD+LISKLGLSKVASTIVGDEKTRGISGGEKKRLS+ CQLFGTPSLIFCDEPTTGLDAFQA
Sbjct: 1 MLLPRVLPLLIASSCLFSTTSAVDKLDVEWKDVSCSVGRSKKNAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQLPYSKRTRLHGTLTVGGAERAPDQEQA--------FVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDKLISKLGLSKVASTIVGDEKTRGISGGEKKRLSMGCQLFGTPSLIFCDEPTTGLDAFQA 205
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: A0A6H5K880_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K880_9PHAE) HSP 1 Score: 266 bits (680), Expect = 9.150e-85 Identity = 150/186 (80.65%), Postives = 152/186 (81.72%), Query Frame = 1
Query: 91 KDVSFSVGRGKKKAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGAERAPDQEQASAFLAWHAFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQASAA 648
+DVSFSVGRGKKKAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQ AFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVD+LISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQASAA
Sbjct: 3 RDVSFSVGRGKKKAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQ----------------------------------AFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDKLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQASAA 154
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: A0A7S0QJW9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QJW9_9CRYP) HSP 1 Score: 194 bits (494), Expect = 2.860e-57 Identity = 104/187 (55.61%), Postives = 135/187 (72.19%), Query Frame = 1
Query: 82 VEWKDVSFSVGRGKK-KAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGAERAPDQEQASAFLAWHAFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQA 639
++W VS ++ K + +L+ ++GRA GK+L +MGPSGSGKTTLLN+LAGQ+ SK +L G + V G E A A+V+QED+FYSQ+TVRETLL AARLRLP ++PL K A+V+ ++ KL L+K A+TIVG + RGISGGEKKRLSI C+L +PSLIF DEPTTGLD+FQA
Sbjct: 35 LDWSQVSCTLNTKKGVRHLLNNINGRAMPGKILGIMGPSGSGKTTLLNSLAGQLVSSKGLRLEGNMAVNGVEVTD-----GAAGIRKAYVRQEDIFYSQMTVRETLLFAARLRLPRTMPLASKEALVEEILGKLSLTKCANTIVGSNRVRGISGGEKKRLSIGCELIASPSLIFLDEPTTGLDSFQA 216
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: A0A4D9D0J8_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0J8_9STRA) HSP 1 Score: 202 bits (514), Expect = 3.110e-57 Identity = 105/173 (60.69%), Postives = 134/173 (77.46%), Query Frame = 1
Query: 127 KAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGA--ERAPDQEQASAFLAWHAFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQA 639
K +L V+G A G++LA++GPSGSGKTTLLN LAGQVP S L G L V G +P +S+ A+V+Q+D+FYSQLTVRETL+MAARLRLP S+ L EK+++VDRL+ +LGL+K A TIVGD+K RGISGGEKKRLS+AC+L G+PSLIF DEPT+GLD++Q+
Sbjct: 89 KNLLSQVTGHAEPGRLLAILGPSGSGKTTLLNVLAGQVPASNALTLSGRLYVNGQLLSASPSSSFSSSVDYTQAYVRQQDLFYSQLTVRETLVMAARLRLPPSLTLREKTSLVDRLLKRLGLAKAADTIVGDDKVRGISGGEKKRLSLACELLGSPSLIFADEPTSGLDSYQS 261
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: A0A7S3RUE9_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RUE9_EMIHU) HSP 1 Score: 192 bits (488), Expect = 8.310e-57 Identity = 107/186 (57.53%), Postives = 131/186 (70.43%), Query Frame = 1
Query: 82 VEWKDVSFSVGRGKKKAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGAERAPDQEQASAFLAWHAFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQA 639
V ++ ++FS G K K IL G SG A G++LA+MGPSGSGKTTLLNALAGQ+ K L G LTVGG E + +A +V+QEDVFY+Q+TVRETLL AARLRLP+S L EK V+ +IS+L L + A TIVGD K RGISGGE+KRL+I C+L P L+F DEPT+GLDAF A
Sbjct: 74 VSFEGLTFSTGGEKGKTILHGCSGEAAPGRMLAIMGPSGSGKTTLLNALAGQLKAGPKATLTGRLTVGGDLCGGAGEVSGLRVA---YVRQEDVFYTQMTVRETLLFAARLRLPASTSLAEKERRVEEIISRLDLGRAADTIVGDGKRRGISGGERKRLAIGCELLSDPRLLFLDEPTSGLDAFAA 256
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: A0A1Y1ITG6_KLENI (ABC transporter G family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ITG6_KLENI) HSP 1 Score: 197 bits (500), Expect = 1.480e-55 Identity = 115/203 (56.65%), Postives = 147/203 (72.41%), Query Frame = 1
Query: 58 TSAVDKLD----VEWKDVSFSV----GRGKKKAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGAERAPDQEQASAFLAWHAFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEK-TRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQA 639
+S VD++ +EW+DV ++ GR KK IL GV+G+A+ G++LA+MGPSGSGKT+LLNALAGQ +K+ +L G L V G E A +E A+ V+Q+D+FYSQLTVRETL MAA+L+LP S P EEK A V+ LI LGL A TIVGD++ RGISGGE+KRLSIAC+L +PS+IF DEPTTGLD+FQA
Sbjct: 48 SSVVDEVSTGVALEWQDVRMTLLDKKGRAKKH-ILRGVNGKASPGRLLAIMGPSGSGKTSLLNALAGQTQKAKRVKLVGCLLVNGKESASLKEHKVAY------VRQDDIFYSQLTVRETLRMAAQLQLPQSQPDEEKDAYVEELILHLGLVACADTIVGDDRRVRGISGGERKRLSIACELISSPSIIFADEPTTGLDSFQA 243
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: A0A7S1UAZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAZ7_9STRA) HSP 1 Score: 188 bits (477), Expect = 2.280e-55 Identity = 103/190 (54.21%), Postives = 135/190 (71.05%), Query Frame = 1
Query: 82 VEWKDVSFSV--GRGKK-KAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGAERAPDQEQASAFLAWHA-FVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQA 639
+ W D+S + GKK K +L G A G++ A+MGP GSGKT+LL+ALAG+ K +L G + V G + + A +VKQ+D+FY+Q+TVRETL+ AARLRLP VPLEEK A+V+ L+SKLGL+KVA TIVGD K+RGISGGEKKRL+IAC+L G P+++F DEPT+GLD+FQA
Sbjct: 21 LRWSDLSLRIEGSDGKKDKVVLQRCFGEAAPGRLTALMGPEGSGKTSLLSALAGEAAAGKGVRLEGRVAVNGRSSKRGVRGSGSDGGVRAGYVKQQDLFYAQMTVRETLMFAARLRLPRDVPLEEKRALVEGLLSKLGLAKVADTIVGDAKSRGISGGEKKRLNIACELIGDPTILFLDEPTSGLDSFQA 210
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: A0A8J4DGJ1_9CHLO (ABC transporter domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DGJ1_9CHLO) HSP 1 Score: 189 bits (480), Expect = 2.890e-55 Identity = 103/174 (59.20%), Postives = 125/174 (71.84%), Query Frame = 1
Query: 118 GKKKAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGAERAPDQEQASAFLAWHAFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQA 639
G KAIL GVSG A G+++ +MGPSGSGKT+LL LAG+VP K L G LTV G A + AFV+QED+FYS L+VRETL +AA LRLP + E + V++L+ LGL+K A+T VGDEKTRG+SGGEKKRLSI C+L G+PSLIFCDEPTTGLD+FQA
Sbjct: 86 GGTKAILRGVSGVARPGRLVGLMGPSGSGKTSLLTVLAGRVPAGSKMDLTGALTVNGLPAAEAGHR-------QAFVQQEDLFYSMLSVRETLSLAAELRLPGHMSDEARDRYVEQLVGVLGLAKAAATRVGDEKTRGLSGGEKKRLSIGCELVGSPSLIFCDEPTTGLDSFQA 252
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: A0A7S2S2A1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2A1_9STRA) HSP 1 Score: 196 bits (497), Expect = 4.430e-55 Identity = 108/179 (60.34%), Postives = 132/179 (73.74%), Query Frame = 1
Query: 106 SVGRGKKKAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGAERAPDQEQASAFLAW-HAFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQA 639
+ GR KK ILDG+ GRA G++LAVMGPSG GK++LLNA+AGQ+ SK L G+L V G + AS L A+V Q D FYSQ+TVRETLL AARLRLP SV L+E +VD L+ KLGL+K A TIVGD+K RGISGGE+KRL+IAC+L +PS+IF DEPT+GLD+FQA
Sbjct: 91 AAGRAAKKVILDGIDGRATPGRMLAVMGPSGCGKSSLLNAVAGQMKQSKGLVLEGSLAVNG------KAVASGHLGVPFAYVTQYDTFYSQMTVRETLLFAARLRLPRSVKLKENKRIVDELMEKLGLTKSADTIVGDQKIRGISGGERKRLNIACELISSPSVIFLDEPTSGLDSFQA 263
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Match: A0A388K8C4_CHABU (ABC transporter domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K8C4_CHABU) HSP 1 Score: 197 bits (502), Expect = 1.020e-54 Identity = 106/191 (55.50%), Postives = 140/191 (73.30%), Query Frame = 1
Query: 82 VEWKDVSFSVGRGKK-----KAILDGVSGRANAGKVLAVMGPSGSGKTTLLNALAGQVPYSKKTQLHGTLTVGGAERAPDQEQASAFLAWHAFVKQEDVFYSQLTVRETLLMAARLRLPSSVPLEEKSAMVDRLISKLGLSKVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQA 639
+EW+++S + + +K K ILD +SG+A G++LA++GPSGSGKTTLL+ALAGQV S+ L G+L V G + + AFV+Q+D+FYSQLTVRETL+MAA+L+LP ++ EEK ++ L+ LGL+ VA TIVGDEKTRGISGGE+KRLSIAC+L PS++F DEPTTGLDAFQA
Sbjct: 86 LEWENISCELKKRQKGEVSTKKILDNISGKAFPGQLLAILGPSGSGKTTLLSALAGQVAKSENLGLTGSLKVNGKKNGTSTHR-------QAFVRQDDIFYSQLTVRETLMMAAKLQLPRTMTEEEKERHIESLMQHLGLTGVADTIVGDEKTRGISGGERKRLSIACELIAAPSVVFADEPTTGLDAFQA 269 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1245.2032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1245.2032.1 >prot_Ecto-sp13_S_contig1245.2032.1 ID=prot_Ecto-sp13_S_contig1245.2032.1|Name=mRNA_Ecto-sp13_S_contig1245.2032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp MLLPRVLQLLIASSFLFSTTSAVDKLDVEWKDVSFSVGRGKKKAILDGVSback to top mRNA from alignment at Ecto-sp13_S_contig1245:13757..17562+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1245.2032.1 ID=mRNA_Ecto-sp13_S_contig1245.2032.1|Name=mRNA_Ecto-sp13_S_contig1245.2032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3806bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1245:13757..17562+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1245:13757..17562+ >mRNA_Ecto-sp13_S_contig1245.2032.1 ID=mRNA_Ecto-sp13_S_contig1245.2032.1|Name=mRNA_Ecto-sp13_S_contig1245.2032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1245:13757..17562+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |