mRNA_Ecto-sp13_S_contig88303.20318.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88303.20318.1
Unique NamemRNA_Ecto-sp13_S_contig88303.20318.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig88303.20318.1 vs. uniprot
Match: UPI001422F346 (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001422F346)

HSP 1 Score: 249 bits (636), Expect = 1.300e-82
Identity = 123/133 (92.48%), Postives = 126/133 (94.74%), Query Frame = 1 
Query:    1 MRLILGFAILLLTAVAAPPAESADQRESEDCRPPHSIIDYPPYAELLCSGLAKMALGLHGEALKDFEAAARIDIHEVPNFEIYTYLAHAQLLLGDQDTYRESITKSELALFVWSGTYHCNYAEPQVRLLDAVG 399
            MRL+LGFAILLLTAV APPAESAD RESEDCRP HSIIDYPPYAELLCSGLAKMALGL   ALKDFEAAARIDIHEVPNFEIYTYLAHAQLLLGDQD YRESITKSELALFVWSGTYHC+YAEP+VRLLDAVG
Sbjct:    1 MRLVLGFAILLLTAVPAPPAESADPRESEDCRPRHSIIDYPPYAELLCSGLAKMALGLPSAALKDFEAAARIDIHEVPNFEIYTYLAHAQLLLGDQDAYRESITKSELALFVWSGTYHCSYAEPEVRLLDAVG 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88303.20318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001422F3461.300e-8292.48hypothetical protein n=1 Tax=Pelagibius litoralis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88303contigEcto-sp13_S_contig88303:151..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size399
Hectar predicted targeting categorysignal peptide
Exons1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.316756-CDS-Ecto-sp13_S_contig88303:150..5491681464155.316756-CDS-Ecto-sp13_S_contig88303:150..549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88303 151..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88303.20318.1prot_Ecto-sp13_S_contig88303.20318.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88303 151..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88303.20318.1

>prot_Ecto-sp13_S_contig88303.20318.1 ID=prot_Ecto-sp13_S_contig88303.20318.1|Name=mRNA_Ecto-sp13_S_contig88303.20318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MRLILGFAILLLTAVAAPPAESADQRESEDCRPPHSIIDYPPYAELLCSG
LAKMALGLHGEALKDFEAAARIDIHEVPNFEIYTYLAHAQLLLGDQDTYR
ESITKSELALFVWSGTYHCNYAEPQVRLLDAVG
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mRNA from alignment at Ecto-sp13_S_contig88303:151..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88303.20318.1 ID=mRNA_Ecto-sp13_S_contig88303.20318.1|Name=mRNA_Ecto-sp13_S_contig88303.20318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88303:151..549+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCTTATTCTGGGATTTGCGATACTGCTTCTCACCGCCGTAGCGGC
GCCTCCGGCAGAGTCGGCGGACCAGCGAGAGTCGGAAGACTGCAGGCCGC
CCCACAGCATCATCGACTATCCCCCTTACGCCGAACTTCTCTGCAGCGGC
CTGGCGAAGATGGCCCTCGGGCTTCACGGTGAGGCCTTGAAAGACTTCGA
GGCGGCAGCGCGGATCGACATCCACGAAGTGCCGAATTTTGAGATCTATA
CCTACCTTGCCCACGCCCAGTTGCTGCTCGGCGACCAAGACACCTATCGG
GAAAGCATCACCAAGTCAGAACTGGCCCTATTCGTCTGGAGCGGCACTTA
TCATTGCAATTATGCGGAGCCACAGGTGCGCCTTCTCGACGCCGTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88303:151..549+

>mRNA_Ecto-sp13_S_contig88303.20318.1 ID=mRNA_Ecto-sp13_S_contig88303.20318.1|Name=mRNA_Ecto-sp13_S_contig88303.20318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88303:151..549+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCTTATTCTGGGATTTGCGATACTGCTTCTCACCGCCGTAGCGGC
GCCTCCGGCAGAGTCGGCGGACCAGCGAGAGTCGGAAGACTGCAGGCCGC
CCCACAGCATCATCGACTATCCCCCTTACGCCGAACTTCTCTGCAGCGGC
CTGGCGAAGATGGCCCTCGGGCTTCACGGTGAGGCCTTGAAAGACTTCGA
GGCGGCAGCGCGGATCGACATCCACGAAGTGCCGAATTTTGAGATCTATA
CCTACCTTGCCCACGCCCAGTTGCTGCTCGGCGACCAAGACACCTATCGG
GAAAGCATCACCAAGTCAGAACTGGCCCTATTCGTCTGGAGCGGCACTTA
TCATTGCAATTATGCGGAGCCACAGGTGCGCCTTCTCGACGCCGTGGGG
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