prot_Ecto-sp13_S_contig8829.20315.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8829.20315.1
Unique Nameprot_Ecto-sp13_S_contig8829.20315.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length246
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8829.20315.1 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 313 bits (803), Expect = 5.680e-101
Identity = 208/239 (87.03%), Postives = 214/239 (89.54%), Query Frame = 0 
Query:    1 MSSSSPRITVAVAAPAVGNGMPQEDLGSEEFDGLLQPSVWDTLVDLGDFSCADLGGSTGTETQQQYKQQQPLPSPPKISGRKRSLPQTSSWDNLGPKALSEISASLLACGWDGGVDSSNSVSSSPHFLGPPAGAAAAVATAGPSADSAVAPLTASPCSRDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRGAVSGGVKAGTGAGAGGGKRPLNPDRMERKASREKRRREEVS 239
            MSSSSPRI VAVAAPA G GMP EDLGSEEFDGLLQPSVWDTLVDLGDFSCADL GS GTETQQQYKQQQPLPSPPK SGRKRSLPQTS+WDNLGPKALSEISASLLA GWDGGV+SS SVS+SPHFLGPPAGA       GPSADS   P T SPCSRD  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRGAV+GGVK G+GAGA GGKRPLNPDRMERKASREKRRREEV+
Sbjct:    1 MSSSSPRINVAVAAPAAGIGMPHEDLGSEEFDGLLQPSVWDTLVDLGDFSCADLSGSNGTETQQQYKQQQPLPSPPKTSGRKRSLPQTSNWDNLGPKALSEISASLLAGGWDGGVNSSYSVSTSPHFLGPPAGAGGG----GPSADSVAVPHTTSPCSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRGAVAGGVKVGSGAGAAGGKRPLNPDRMERKASREKRRREEVN 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8829.20315.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVI5_9PHAE5.680e-10187.03BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8829contigEcto-sp13_S_contig8829:2809..4168 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8829.20315.1mRNA_Ecto-sp13_S_contig8829.20315.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8829 2483..6578 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8829.20315.1 ID=prot_Ecto-sp13_S_contig8829.20315.1|Name=mRNA_Ecto-sp13_S_contig8829.20315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
MSSSSPRITVAVAAPAVGNGMPQEDLGSEEFDGLLQPSVWDTLVDLGDFS
CADLGGSTGTETQQQYKQQQPLPSPPKISGRKRSLPQTSSWDNLGPKALS
EISASLLACGWDGGVDSSNSVSSSPHFLGPPAGAAAAVATAGPSADSAVA
PLTASPCSRDDAAAASHVLVAAKQERAGGRAAAGGKGSSSSSSKGRRGAV
SGGVKAGTGAGAGGGKRPLNPDRMERKASREKRRREEVSRPTPFE*
back to top