mRNA_Ecto-sp13_S_contig8829.20315.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8829.20315.1
Unique NamemRNA_Ecto-sp13_S_contig8829.20315.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8829.20315.1 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 2.070e-91
Identity = 208/239 (87.03%), Postives = 214/239 (89.54%), Query Frame = 3 
Query:  327 MSSSSPRITVAVAAPAVGNGMPQEDLGSEEFDGLLQPSVWDTLVDLGDFSCADLGGSTGTETQQQYKQQQPLPSPPKISGRKRSLPQTSSWDNLGPKALSEISASLLACGWDGGVDSSNSVSSSPHFLGPPAGAAAAVATAGPSADSAVAPLTASPCSRDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRGAVSGGVKAGTGAGAGGGKRPLNPDRMERKASREKRRREEVS 1043
            MSSSSPRI VAVAAPA G GMP EDLGSEEFDGLLQPSVWDTLVDLGDFSCADL GS GTETQQQYKQQQPLPSPPK SGRKRSLPQTS+WDNLGPKALSEISASLLA GWDGGV+SS SVS+SPHFLGPPAGA       GPSADS   P T SPCSRD  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRGAV+GGVK G+GAGA GGKRPLNPDRMERKASREKRRREEV+
Sbjct:    1 MSSSSPRINVAVAAPAAGIGMPHEDLGSEEFDGLLQPSVWDTLVDLGDFSCADLSGSNGTETQQQYKQQQPLPSPPKTSGRKRSLPQTSNWDNLGPKALSEISASLLAGGWDGGVNSSYSVSTSPHFLGPPAGAGGG----GPSADSVAVPHTTSPCSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRGAVAGGVKVGSGAGAAGGKRPLNPDRMERKASREKRRREEVN 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8829.20315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVI5_9PHAE2.070e-9187.03BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8829contigEcto-sp13_S_contig8829:2483..6578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3474
Hectar predicted targeting categoryother localisation
Exons2
Cds size738
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.116115-UTR-Ecto-sp13_S_contig8829:2482..28081681464155.116115-UTR-Ecto-sp13_S_contig8829:2482..2808Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8829 2483..2808 +
1681464155.149351-UTR-Ecto-sp13_S_contig8829:4168..65781681464155.149351-UTR-Ecto-sp13_S_contig8829:4168..6578Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8829 4169..6578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.1275203-CDS-Ecto-sp13_S_contig8829:2808..29451681464155.1275203-CDS-Ecto-sp13_S_contig8829:2808..2945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8829 2809..2945 +
1681464155.1385593-CDS-Ecto-sp13_S_contig8829:3567..41681681464155.1385593-CDS-Ecto-sp13_S_contig8829:3567..4168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8829 3568..4168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8829.20315.1prot_Ecto-sp13_S_contig8829.20315.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8829 2809..4168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8829.20315.1

>prot_Ecto-sp13_S_contig8829.20315.1 ID=prot_Ecto-sp13_S_contig8829.20315.1|Name=mRNA_Ecto-sp13_S_contig8829.20315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
MSSSSPRITVAVAAPAVGNGMPQEDLGSEEFDGLLQPSVWDTLVDLGDFS
CADLGGSTGTETQQQYKQQQPLPSPPKISGRKRSLPQTSSWDNLGPKALS
EISASLLACGWDGGVDSSNSVSSSPHFLGPPAGAAAAVATAGPSADSAVA
PLTASPCSRDDAAAASHVLVAAKQERAGGRAAAGGKGSSSSSSKGRRGAV
SGGVKAGTGAGAGGGKRPLNPDRMERKASREKRRREEVSRPTPFE*
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mRNA from alignment at Ecto-sp13_S_contig8829:2483..6578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8829.20315.1 ID=mRNA_Ecto-sp13_S_contig8829.20315.1|Name=mRNA_Ecto-sp13_S_contig8829.20315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4096bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8829:2483..6578+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTTGGCAGCTTCCGCTTCCCTTCAGAGGCGAGAGGCCTTCTGACCAA
TCAGAGGGCGTGACGCCTGAAATGTCTACCTCAGGAAGATCCACAAACAA
GAGAGAGAAACACAGAACGTCAGCAGTACGGGAGCGGCTGTTATTGCAAG
GCCACCCACGCCTCCAACGTGCAGCCGTAGGAGAGCTAAAGGAGGAAGGA
GGTTGCGAGGGTGACATTGTTTCCCGAGGTAGAGTGAGGGCACTTCTACA
GGTCGTCACGGCTGCTTGGGCGGACGGGAGAGGGAGGAGATAGGGTTACT
CCGTGCCGGTTTCCCGTTTGTTTGGCATGTCGTCGTCGTCCCCTCGCATC
ACCGTCGCGGTTGCTGCGCCGGCAGTCGGGAATGGCATGCCGCAAGAAGA
CCTCGGGTCGGAAGAGTTCGACGGCTTGCTTCAGCCGAGCGTGTGGGACA
CTCTCGTTGACTTGTGAGTTTCGTGGCATCCCCCACAATAATGTTCGCTG
TTGTATGGGGAGGGACGAGTAGGCAACTGATGACCCGAGAGTGTATTTTC
ACCCGGCTCTTCTCCATTTTTTTTTTGTTGAAGTTCGAAGCAAGTGCAGT
TAGTTTCTGATCATGGGGCATGCAGGAGTAGAGCGATGCACCCGCGTCAT
GTGCTCCCCGCACTCAGGTCGGTTCATCGCCCGGCCTCCTGCACAGTTCG
TACTTCCCTCTGCTCTTCGTTTTTAACTCGTCTTGGCTCAAGCAAGAAAG
AAGGTGCCCCGTATTGCTGTTGGGGAAGTGTGGGTACAACGCACGTTCCG
TTTTGTGACGCTTTGTTTTTACGTGGTGTGGTTCACTGTGCCCCGAACGT
CAACCTACGTCTCCATTGCAAGCCGGGGGATCTGCCTTTGCATGGGAGCC
TTTGTCCCTCCCGCGTTACAAGTCGCTATCCCTGCTCCTCTGTCTCTCTC
TGTGCCTGTTGATGTACCCAACCCGATCGCAATCGTTGACAACCTGCAGT
AAAAATAATATTTTTCCTTCAAACGCGCATAGTGCTCTCCTTACGACGTG
TATGCGCACGTTCCTGTCTTTCTGTCGCCCCACAGAGGCGACTTCTCATG
CGCAGACCTGGGCGGCAGCACTGGAACGGAGACACAACAGCAGTACAAGC
AGCAGCAGCCACTGCCCTCTCCCCCCAAAATAAGTGGGCGGAAGCGGAGC
TTGCCGCAGACAAGCAGCTGGGACAACCTCGGCCCGAAGGCCCTCTCGGA
AATCAGCGCTAGCCTTCTCGCATGCGGCTGGGATGGCGGCGTTGACAGCA
GCAACAGCGTCAGCAGCAGCCCGCATTTCCTGGGACCCCCAGCAGGAGCA
GCAGCAGCAGTAGCAACAGCAGGGCCTAGTGCCGATTCTGCGGTCGCTCC
CCTCACGGCTTCTCCTTGCTCCCGCGATGATGCTGCTGCCGCATCGCACG
TACTGGTGGCAGCAAAGCAGGAACGGGCCGGAGGAAGGGCAGCAGCGGGG
GGGAAGGGTAGCAGCAGCAGCAGCAGCAAGGGCCGCCGAGGGGCGGTCTC
GGGCGGGGTGAAGGCGGGGACCGGGGCGGGAGCGGGAGGAGGGAAGAGAC
CGCTAAACCCGGACCGAATGGAGCGGAAGGCCTCGCGGGAGAAGCGGAGG
CGAGAGGAGGTCAGTCGGCCTACACCTTTTGAATAGGATGATGGAATTCA
TGCTTCGGCGAAATTCCGTCGGAAAAATAAGCGTTGAAATGGCCCATCAT
GTGTGTTCATAATAACACTCTTTGTGCGTGCACCTTCATTGATTTTCCCA
CAAACTTGTAAGGGGACATGCAACGCAGAGGAGGCACGCATAGGAGTATA
AATATTTGGCCTACTGCTGTCGTGCACACCTAGCAGGCGATGGGCTTCAT
CCCACAGCTGCATATTTTCTGTCCATCGTTGTTGTTGTTGCTGTTGTTGT
TGTCGTTGTTGTCTTACATGAAAACCCGTTCTTCTCTGCACTCAGTACTT
CTGATGTCCGTACTGGACCAACTGACGCGAACGCCTTGTGTGGTCACAAG
CCAACTGCGCGGGGGGTACACCTTTCTATAAAAAAAGGAAATGCAAAAAT
AGACACCACAAATTCCTACGAGGCGCGATTTGTTATCCAACCAAACAGAG
ATGAACAGCAAGGAACCAATCGGGATGAGACGATGGACGACCCCGGTCAA
GGGGATGGAAAAACGAAAGGCAAAAAAGAGAAAGAAAAGAAAGACTCCAC
TTGCTGAAGAGACTTCACCACATCCCTTTCGACTGAGGTCACACCTCGAA
CGGGTAGTCTTTCTGCGAGGTAATGTTTACTTTCCAAGAAGAAACAGATA
GAAAAGAACGAATTACAGCGTTGTGGTGCAAAAAATGCATAGCGTTTGTG
AGGTGGCTGGGCTGCACGTCACTCAAACTCGTTTATTGTACTGCGTAGGT
TTTGATCAGTGGTTTTTGTGGCAGGATCGTCTGCAGGCTGGCTAGTAGCG
TATTTTCTCTTCCCATTCTCGCCCTGTTCACGCGTAAAGTTTTTTGGTTG
ATATACAAATGCATACGCATTGCAACATGCACACGCATCCATGGTTCATG
GTTGATACCCCCGATGTAAGCAGTTCGATTCCCGAAAGCTGCAGTAGGCC
AGGAACACGCACGTAACGTCAGTGTGCCCACGAGGCCTCTTATGTGTCAT
CTCATTATTGTGTGTTGCTAACAGCGTGTGTGCGTTCTGGTGTTGGAACA
ACTTGTTTGCGTTTGCCACACTCCCGTTCATATCCGTACAACTAAGAGCG
TTTGACGTAGAACCAAGAAGAACTACTTGTAGAACTTGATATCTGCAAAC
CATCATGGTGTGCAGTAAGATATGTACGCACATGTGGTCAAACTCAAAAA
ACAATGTGAAACACGTTCCACTTACGCCTTCGCCAAGACCTGCTAAATAG
CGCTCCCTCAAGTACAGTACTGCTGTCGTGTCCCGAGTACGAACGTCAGG
TTTTCGTTGAGTTTGTCGAATCTGTTGTTCGCTTCCCCCCACTTGTTAGG
GCCGAGTGCCGGGAGCCTACAAGAGTAACAGAGGTATGCATACATCAATA
CCATTATTCACACGCGCTTTTCACCTTTACACCATTATTCCATGTATGTA
CAGGCGTTTTACCTCTCTTTGCTGTTTTTGTAGTGTTCATCACTATCCGT
CCTCGACCCGCGGGACTACATACACGGATGTGTCATATGAGAACAGGAGT
ATGTACTACGCAGATTTTGTTTCACACGTTGTTTCCTTAATCACGAAGAC
TGGCGACAGATCATTTGAACTTCTAGCAGTATTTTTGTCGAGGTGAGACC
GCCATTTTCAGGTTCAGGACGAATGGTCGCTTTTCGAGGTTCGGCCGGGA
TGTATGCATGCAGTTCACAGCAGCAGCATGCGTTGATACCAGGCGCGCAT
TCGTGGCGTAACGTAAGGGCCGTCGTGTTCATCCATCTCCACATCGCTCG
GGTGCCCGCGCAATGTACCAGAATCCACCATGGTGCGCACGTGCCACTTA
CTACCGGACTCGAACTGTGGATGGAGATGGATCATTGTGTTGCTGGTTTT
TTACAAGATGAACATTCTCAATGGTGACAGCTTCTTTTGGGCGAAGTCGT
GCCCCAAACGCCTCTCAGTTAAACCGAAGCCCGAGCAGTAGCTTTGCCCA
TGGCACACGGTTGGTGGGCGGACCTGCCGCGCCTCGGCTTTCTTCTCCCC
TTGATTGTGTACTCAGACATGTCGGACCAAAGCGGATCGACGACGAGGCG
GCCAGGAAGAGGCCTTTGCTTGAGACCGGATGCCTAAGGGGTTTCGGGGT
GTACTCCCACGGCGTTAATCTCATTAACACTGGATCATGATCGAGATGAC
GATACGCGAGATTTGCCAAGACAACGACAGACGATTCGCGGTTGACAGCA
GGGCGGGGCTGAAAGCAGCCAACCCACAAACACGAAGAAACGAAAACCCA
CAAATGCGAAGAAACGAACCATTAGCGCGAGCGAGCCGTGAAACGGTCCC
GATCTTCGCGATGTAAATGTGAGCTTCGCACGTTTGTGTCCGGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8829:2483..6578+

>mRNA_Ecto-sp13_S_contig8829.20315.1 ID=mRNA_Ecto-sp13_S_contig8829.20315.1|Name=mRNA_Ecto-sp13_S_contig8829.20315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8829:2483..6578+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCGTCGTCCCCTCGCATCACCGTCGCGGTTGCTGCGCCGGCAGT
CGGGAATGGCATGCCGCAAGAAGACCTCGGGTCGGAAGAGTTCGACGGCT
TGCTTCAGCCGAGCGTGTGGGACACTCTCGTTGACTTAGGCGACTTCTCA
TGCGCAGACCTGGGCGGCAGCACTGGAACGGAGACACAACAGCAGTACAA
GCAGCAGCAGCCACTGCCCTCTCCCCCCAAAATAAGTGGGCGGAAGCGGA
GCTTGCCGCAGACAAGCAGCTGGGACAACCTCGGCCCGAAGGCCCTCTCG
GAAATCAGCGCTAGCCTTCTCGCATGCGGCTGGGATGGCGGCGTTGACAG
CAGCAACAGCGTCAGCAGCAGCCCGCATTTCCTGGGACCCCCAGCAGGAG
CAGCAGCAGCAGTAGCAACAGCAGGGCCTAGTGCCGATTCTGCGGTCGCT
CCCCTCACGGCTTCTCCTTGCTCCCGCGATGATGCTGCTGCCGCATCGCA
CGTACTGGTGGCAGCAAAGCAGGAACGGGCCGGAGGAAGGGCAGCAGCGG
GGGGGAAGGGTAGCAGCAGCAGCAGCAGCAAGGGCCGCCGAGGGGCGGTC
TCGGGCGGGGTGAAGGCGGGGACCGGGGCGGGAGCGGGAGGAGGGAAGAG
ACCGCTAAACCCGGACCGAATGGAGCGGAAGGCCTCGCGGGAGAAGCGGA
GGCGAGAGGAGGTCAGTCGGCCTACACCTTTTGAATAG
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