prot_Ecto-sp13_S_contig8827.20314.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8827.20314.1
Unique Nameprot_Ecto-sp13_S_contig8827.20314.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length94
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8827.20314.1 vs. uniprot
Match: A0A6H5JI65_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI65_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.510e-9
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0 
Query:   59 PKILDRVVVECYGAETPLNQVASVKTTRYIIFLI 92
            PKILDRVVVECYGAETPLNQVASVKTT     L+
Sbjct:  100 PKILDRVVVECYGAETPLNQVASVKTTSATALLV 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8827.20314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI65_9PHAE7.510e-982.35RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1360.40coord: 58..92
e-value: 2.8E-6
score: 28.8
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 59..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8827contigEcto-sp13_S_contig8827:4391..5618 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8827.20314.1mRNA_Ecto-sp13_S_contig8827.20314.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8827 4391..5618 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8827.20314.1 ID=prot_Ecto-sp13_S_contig8827.20314.1|Name=mRNA_Ecto-sp13_S_contig8827.20314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
MRSWLLLRNGWTNRWRACGLTSRPCEPGGQRVHALVFCRGPTRVAVGRVS
CSPSFARLPKILDRVVVECYGAETPLNQVASVKTTRYIIFLIW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036191RRF_sf