mRNA_Ecto-sp13_S_contig8827.20314.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8827.20314.1
Unique NamemRNA_Ecto-sp13_S_contig8827.20314.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8827.20314.1 vs. uniprot
Match: A0A6H5JI65_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI65_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.510e-9
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:  175 PKILDRVVVECYGAETPLNQVASVKTTRYIIFLI 276
            PKILDRVVVECYGAETPLNQVASVKTT     L+
Sbjct:  100 PKILDRVVVECYGAETPLNQVASVKTTSATALLV 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8827.20314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI65_9PHAE7.510e-982.35RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8827contigEcto-sp13_S_contig8827:4391..5618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.8
Seed ortholog evalue3.8e-07
Seed eggNOG ortholog2880.D7G2D8
Preferred nameRRF1
Model size282
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K02838,ko:K03283,ko:K13811
KEGG TC1.A.33.1
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00230,map00261,map00450,map00920,map01100,map01120,map01130,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00176,M00353,M00355
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0002181,GO:0002184,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007275,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009814,GO:0009817,GO:0009987,GO:0010154,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0032544,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0042742,GO:0043021,GO:0043023,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045087,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0061458,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098542,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
Exons3
EggNOG free text desc.ribosomal large subunit binding
EggNOG OGsCOG0233@1,KOG4759@2759
Ec32 ortholog descriptionribosome recycling factor
Ec32 orthologEc-00_005780.1
EC2.7.1.25,2.7.7.4
Cds size282
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.048622-CDS-Ecto-sp13_S_contig8827:4390..44811681464155.048622-CDS-Ecto-sp13_S_contig8827:4390..4481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8827 4391..4481 +
1681464155.0623934-CDS-Ecto-sp13_S_contig8827:5217..52991681464155.0623934-CDS-Ecto-sp13_S_contig8827:5217..5299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8827 5218..5299 +
1681464155.0765946-CDS-Ecto-sp13_S_contig8827:5509..56181681464155.0765946-CDS-Ecto-sp13_S_contig8827:5509..5618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8827 5510..5618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8827.20314.1prot_Ecto-sp13_S_contig8827.20314.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8827 4391..5618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8827.20314.1

>prot_Ecto-sp13_S_contig8827.20314.1 ID=prot_Ecto-sp13_S_contig8827.20314.1|Name=mRNA_Ecto-sp13_S_contig8827.20314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
MRSWLLLRNGWTNRWRACGLTSRPCEPGGQRVHALVFCRGPTRVAVGRVS
CSPSFARLPKILDRVVVECYGAETPLNQVASVKTTRYIIFLIW*
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mRNA from alignment at Ecto-sp13_S_contig8827:4391..5618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8827.20314.1 ID=mRNA_Ecto-sp13_S_contig8827.20314.1|Name=mRNA_Ecto-sp13_S_contig8827.20314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8827:4391..5618+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTCATGGCTTCTGCTCAGGAACGGATGGACAAATCGGTGGAGAGC
GTGCGGCTTAACCTCGAGACCCTGCGAACCGGGCGGGCAAAGTGAGGGAT
GCGCCGCGGCAATCAACACCTCAGTCAACATAGCAGTTGTGGTTCAGGAG
CGAGCGACCAACAGAGACATTTTTGTGTTGTCCAAGATTGAAGAAATGGG
ACAGTTGATCACGATGCGGATGATTTTTGTACAAAGAACGTTTTGGACGC
GAAAGGTGTTCCCTTCATGATGGTGGCGATGAAAATGATTAGCATGTGGA
GCCTCGACAGCATATCCATTCGCCGGGCCGGTCGCGTAGCCTTTCGCAAG
AGTGAGACGAATTGTCGTCCGTTGGGGCCGCAGTTCTCCCTATGTCATTG
TGGACGTATCCATCAATTTTTACGTTACAAGGTCCAACGATCCGCTGGGC
GCTTACCGCTATTTTGTGTCAATATTCATGTATGCGCAGAAGATACCATC
AAAGAGGGACCGCTCATTGGAGCGGGACTCAGAGCTTCAAAGGAGCGATT
TGGCCGCTTTAACCACTAACATCGACAGCATCGACCCATCACCGCTACTA
GAAGAATTGCTCGCAATGCAAGGCCACTTGCCGTTGCCCCGTGATGTGAA
CAACGAGCCCCATCTCTTGCACAGACGACAAACCGCGTAATATGCTGGAA
ACATCGCCTCCTCCTCTTGAGCCCTGGCAAACTTCGAACCTCCGCCGTTG
TTTGTTTCCGTGCTTGTCCCCTTCTTGTTGCTGATTGGTCGATCCACTCG
CTGCTGGCGGGCTTATCGTAATCTCAGGAGTGCATGCTCTCGTTTTCTGC
CGTGGTCCTACCCGTGTGGCTGTTGGCCGGGTCTCCTGTTCGCCCTCCTT
CGCCCGCCTGTGGGTTGAATTGGGCACCCTTGGTTTCACTCCTTCTCTCG
GCGCGGCCTGCCTTTGACAAGAGTCTCGGAATGCTCGGTTTGAATTGCTT
TCGACAATGGTCCTTCGTCCTTGCGCCGTTTGTTTCGGTTGCTCTTTCCT
GGCGCCCTTGGCATTGCTTGAGTTCTTGGCGCCCTTGGTTTCACCTTGCT
CTCTTGTTGCCTGCCTCAGCCCCAAGATCCTGGACCGAGTGGTGGTGGAG
TGTTACGGGGCGGAGACGCCGCTTAACCAGGTGGCCTCCGTGAAGACCAC
CAGGTATATTATTTTTCTCATTTGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8827:4391..5618+

>mRNA_Ecto-sp13_S_contig8827.20314.1 ID=mRNA_Ecto-sp13_S_contig8827.20314.1|Name=mRNA_Ecto-sp13_S_contig8827.20314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8827:4391..5618+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTCATGGCTTCTGCTCAGGAACGGATGGACAAATCGGTGGAGAGC
GTGCGGCTTAACCTCGAGACCCTGCGAACCGGGCGGGCAAAGAGTGCATG
CTCTCGTTTTCTGCCGTGGTCCTACCCGTGTGGCTGTTGGCCGGGTCTCC
TGTTCGCCCTCCTTCGCCCGCCTCCCCAAGATCCTGGACCGAGTGGTGGT
GGAGTGTTACGGGGCGGAGACGCCGCTTAACCAGGTGGCCTCCGTGAAGA
CCACCAGGTATATTATTTTTCTCATTTGGTAA
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