mRNA_Ecto-sp13_S_contig8823.20311.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8823.20311.1
Unique NamemRNA_Ecto-sp13_S_contig8823.20311.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5L2M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M7_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 4.660e-80
Identity = 115/128 (89.84%), Postives = 120/128 (93.75%), Query Frame = 1
Query:   43 MESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGTTTTLEAAHEELKNALMTHFEFRR 426
            MESKWSKA ESVR+DVECFFGILKG FR+LKLGI+FQDKNVIDNLFFTCCT HN+LHAFDGLDELETV DWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGTTT  EAAHEELKNAL+ H EFRR
Sbjct:    1 MESKWSKAPESVREDVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTSHNVLHAFDGLDELETVEDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGTTTIPEAAHEELKNALIAHVEFRR 128          
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5KML5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML5_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 8.660e-78
Identity = 116/132 (87.88%), Postives = 123/132 (93.18%), Query Frame = 1
Query:   37 TDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGL--HDAWDNDPLLDESTVGSTSPTPADDDGTTTTLEAAHEELKNALMTHFEFRR 426
            TDMESKWSKALESVRKDVE FFGILKG FR+LKLGI+FQ +NVIDNLFFTCCTLH+MLHAFDGLDELETV +WGGRAGL  H  WDNDPLLD+STVGSTSPTPADDDGTTTT +AAHEELKNALMTHFEFRR
Sbjct:    4 TDMESKWSKALESVRKDVEYFFGILKGRFRILKLGILFQHENVIDNLFFTCCTLHSMLHAFDGLDELETVKEWGGRAGLGLHGTWDNDPLLDDSTVGSTSPTPADDDGTTTTPQAAHEELKNALMTHFEFRR 135          
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5K9X5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X5_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.580e-50
Identity = 82/108 (75.93%), Postives = 90/108 (83.33%), Query Frame = 1
Query:    4 GILIPPTKYP--------QTDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDNDPLL 303
             + +PP +Y         +TDMESKW KAL SVRK VECFFGILKG FR+LKLGI+FQDKNVIDNLFFTCCTLHNMLHAFDGLDELE+  +WGGRAGLHDAWDNDPLL
Sbjct:  354 SVNVPPLEYAGELWEGKKKTDMESKWCKALASVRKYVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTLHNMLHAFDGLDELESAEEWGGRAGLHDAWDNDPLL 461          
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 7.710e-46
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 1
Query:   28 YPQTDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDND 294
            Y +TDMESKWSKA ESVRKDVECF GIL G F++LKLGI FQDKNVIDNLF TCCTLHNMLHAFDGL+ELE V +WG RAGLHDAWDND
Sbjct:  110 YNKTDMESKWSKAQESVRKDVECF-GILMGRFKILKLGIFFQDKNVIDNLFVTCCTLHNMLHAFDGLEELEIVEEWGARAGLHDAWDND 197          
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.900e-44
Identity = 75/149 (50.34%), Postives = 94/149 (63.09%), Query Frame = 1
Query:    1 WGILIPPTKYPQTDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGT-------TTTLEAAHEELKNALMTHFEFRR 426
            W  LI P+KYP    ++ +S+ LESVRKDVECFF ILKG FR+LKL + ++ K  IDN+F TCC LHNMLH FDG+D  E   DW G AGLHD WD+DPL D +++GST      + G        T     AH ELK  L+  F +R+
Sbjct:   12 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRK 160          
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 5.260e-43
Identity = 75/145 (51.72%), Postives = 92/145 (63.45%), Query Frame = 1
Query:    1 WGILIPPTKYPQTDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGT-------TTTLEAAHEELKNALMTHF 414
            W  LI P+KYP    ++ +S+ LESVRKDVECFFGILKG FR+LKL + ++ K  IDN+F TCC LHNMLH FDG+D  E   DW G AGLHD WD+DPL D +++GST      + G        T     AH ELK  L+  F
Sbjct:    2 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESF 146          
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.160e-42
Identity = 76/149 (51.01%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    1 WGILIPPTKYPQTDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGT-------TTTLEAAHEELKNALMTHFEFRR 426
            W  LI P+KYP    ++ +S+ LESVRKDVECFFGILKG FR+LKL + ++ K  IDN+F+TCC LHNMLH FDG+D  E   DW G AGLHD WD+DPL D +++GST      + G        T     AH ELK  L+  F +R+
Sbjct:  333 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRK 481          
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.590e-42
Identity = 75/152 (49.34%), Postives = 95/152 (62.50%), Query Frame = 1
Query:    1 WGILIPPTKYPQTDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGTTTTLEAA----------HEELKNALMTHFEFRR 426
            W  LI P+KYPQ++ ++ +S+ LESVRKDVECFFGILKG FR+LKL + +  +  IDN+FFTCC LHNMLH FDGLD  +   DW G AG HDAW++DPL D ++VGS        +G                  H ELK  L+  F FR+
Sbjct:   94 WVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLLPKEGEEEECGEGGHVRKERHPDHAELKRQLIESFAFRK 245          
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.500e-40
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    1 WGILIPPTKYPQTDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGTTTTLEAAHEELKNALMTHFEFRR 426
            W  LIPP+KYP    +  +SK LESVRKDVECFFGI+KG FR+LKL I +  +  IDN+FFTCC LHNMLH++D   E+E   +W G AGLH+AW+++P LD S+VG+   + + +D     +E+     +  L+  F +R+
Sbjct:   94 WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTED---VEVESGFNTRRKQLIASFVYRK 232          
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.360e-38
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    1 WGILIPPTKYPQTDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIFQDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGTTTTLEAAHEELKNALMTHFEFRR 426
            W  LIPP+KYP    +  +SK LESVRKDVECFFGI+KG FR+LKL I +  +  IDN+FFTCC LHNMLH++D   E+E   +W G AGLH+AW+++P LD S+VG+   + + +D     +E+     +  L+  F +R+
Sbjct:  335 WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTED---VEVESGFNTRRKQLIASFVYRK 473          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8823.20311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2M7_9PHAE4.660e-8089.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML5_9PHAE8.660e-7887.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9X5_9PHAE2.580e-5075.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZ66_9PHAE7.710e-4683.15DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L135_9PHAE3.900e-4450.34Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK5_9PHAE5.260e-4351.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE1.160e-4251.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE3.590e-4249.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE1.500e-4047.89DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE4.360e-3847.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8823contigEcto-sp13_S_contig8823:4243..4671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score129.4
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog2880.D7FSK2
Model size429
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
Cds size429
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464154.829557-CDS-Ecto-sp13_S_contig8823:4242..46711681464154.829557-CDS-Ecto-sp13_S_contig8823:4242..4671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8823 4243..4671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8823.20311.1prot_Ecto-sp13_S_contig8823.20311.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8823 4243..4671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8823.20311.1

>prot_Ecto-sp13_S_contig8823.20311.1 ID=prot_Ecto-sp13_S_contig8823.20311.1|Name=mRNA_Ecto-sp13_S_contig8823.20311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
WGILIPPTKYPQTDMESKWSKALESVRKDVECFFGILKGCFRVLKLGIIF
QDKNVIDNLFFTCCTLHNMLHAFDGLDELETVGDWGGRAGLHDAWDNDPL
LDESTVGSTSPTPADDDGTTTTLEAAHEELKNALMTHFEFRR*
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mRNA from alignment at Ecto-sp13_S_contig8823:4243..4671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8823.20311.1 ID=mRNA_Ecto-sp13_S_contig8823.20311.1|Name=mRNA_Ecto-sp13_S_contig8823.20311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8823:4243..4671+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGGGATTCTCATTCCCCCTACGAAATACCCTCAGACTGACATGGAGAG CAAGTGGAGCAAAGCGCTGGAGAGCGTCCGAAAAGATGTCGAGTGCTTCT TCGGCATCTTGAAGGGCTGCTTCAGGGTCCTGAAGTTGGGAATTATTTTC CAGGACAAGAACGTCATCGACAACTTGTTCTTCACGTGCTGCACTCTACA CAACATGCTGCACGCGTTCGACGGGCTGGACGAGCTCGAGACTGTCGGAG ACTGGGGAGGGAGGGCGGGTCTCCACGATGCTTGGGACAACGACCCTTTG TTGGACGAGAGTACTGTGGGGTCCACCAGCCCCACCCCGGCGGACGATGA CGGCACCACCACGACCCTGGAAGCAGCCCATGAGGAGTTGAAGAACGCGC TTATGACGCACTTTGAATTCCGTAGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8823:4243..4671+

>mRNA_Ecto-sp13_S_contig8823.20311.1 ID=mRNA_Ecto-sp13_S_contig8823.20311.1|Name=mRNA_Ecto-sp13_S_contig8823.20311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8823:4243..4671+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGGGATTCTCATTCCCCCTACGAAATACCCTCAGACTGACATGGAGAG
CAAGTGGAGCAAAGCGCTGGAGAGCGTCCGAAAAGATGTCGAGTGCTTCT
TCGGCATCTTGAAGGGCTGCTTCAGGGTCCTGAAGTTGGGAATTATTTTC
CAGGACAAGAACGTCATCGACAACTTGTTCTTCACGTGCTGCACTCTACA
CAACATGCTGCACGCGTTCGACGGGCTGGACGAGCTCGAGACTGTCGGAG
ACTGGGGAGGGAGGGCGGGTCTCCACGATGCTTGGGACAACGACCCTTTG
TTGGACGAGAGTACTGTGGGGTCCACCAGCCCCACCCCGGCGGACGATGA
CGGCACCACCACGACCCTGGAAGCAGCCCATGAGGAGTTGAAGAACGCGC
TTATGACGCACTTTGAATTCCGTAGATAG
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