mRNA_Ecto-sp13_S_contig8822.20310.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: A0A6H5K7I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I9_9PHAE) HSP 1 Score: 237 bits (605), Expect = 1.350e-78 Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 3
Query: 123 MIILTVAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 473
MII TVAWSIAVFVLAGLCEIGGGWLVWQAVREKRP RWWI+PGVLLL AYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR
Sbjct: 1 MIIRTVAWSIAVFVLAGLCEIGGGWLVWQAVREKRP-RWWIIPGVLLLAAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 116
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: A0A2V0NLL9_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLL9_9CHLO) HSP 1 Score: 140 bits (352), Expect = 7.620e-40 Identity = 70/127 (55.12%), Postives = 88/127 (69.29%), Query Frame = 3
Query: 93 PLSAWSRLVRMIILTVAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 473
P A S ++ TVA ++ +F+ AGL EIGGGWLVWQ +R+ RP WWIV GV +L YGF+ P L P +A FGR +AVYGG+FIA+S WGAV DG R DAGD+AG V LAGV + W++PR
Sbjct: 11 PAVAESGVIPWTPATVAATLGIFLFAGLAEIGGGWLVWQGMRKGRPW-WWIVGGVAVLACYGFI-PTLQPP--AASFGRVYAVYGGVFIALSYAWGAVLDGDRPDAGDWAGGAVALAGVVLAWFWPR 133
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: A0A150G6X1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G6X1_GONPE) HSP 1 Score: 132 bits (331), Expect = 9.160e-37 Identity = 67/112 (59.82%), Postives = 79/112 (70.54%), Query Frame = 3
Query: 138 VAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 473
V W++ VFVLAGL EIGGGWLVWQAVR K+ ++ V G L+L AYG V P L PD A F R +AVYGGIFI MS GWG DG R D GD+ G+ + LAGVAV W++PR
Sbjct: 18 VFWTLGVFVLAGLAEIGGGWLVWQAVRNKK-GWYYFVGGALVLVAYG-VIPTLQPD--GATFARVYAVYGGIFIVMSYGWGWAVDGDRPDRGDWVGSAIALAGVAVAWFWPR 125
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: D8U381_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U381_VOLCA) HSP 1 Score: 130 bits (327), Expect = 7.140e-36 Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 3
Query: 138 VAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 473
V W++ VF+LAGL EIGGGWLVWQAVR K+P ++ + G L+L AYG + P L P+ A F R +AVYGGIFI MS GWG DG R D GD+ G + L+GVAV W++PR
Sbjct: 40 VFWTLGVFILAGLAEIGGGWLVWQAVRNKKPW-YYFISGALVLVAYGII-PTLQPE--EATFSRVYAVYGGIFIIMSYGWGWAVDGDRPDRGDWVGTAIALSGVAVAWFWPR 147
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: A0A835XSW3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSW3_9CHLO) HSP 1 Score: 130 bits (327), Expect = 1.250e-35 Identity = 61/112 (54.46%), Postives = 81/112 (72.32%), Query Frame = 3
Query: 138 VAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 473
V W++ VF+LAGL EIGGGWLVWQ +R K+P +++V G ++L AYGF+ P L P+ A F R +AVYGG+FI MS WG V DG R D GD+ G+ + LAGVA+ W++PR
Sbjct: 59 VFWTLGVFILAGLAEIGGGWLVWQTIRNKKPW-YYMVCGAIVLVAYGFI-PTLQPE--GASFARVYAVYGGVFIVMSYSWGWVVDGDRPDTGDWVGSAIALAGVALAWFWPR 166
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: A0A7S1SWG8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SWG8_9CHLO) HSP 1 Score: 129 bits (324), Expect = 2.810e-35 Identity = 63/119 (52.94%), Postives = 82/119 (68.91%), Query Frame = 3
Query: 117 VRMIILTVAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 473
+R + TVA S+A+F+ A L EIGGGWLVWQAVRE +PS WW + G L+L YGF+ D EFGR +AVYGG+FI +S WG + DG R DAGD+ G+ V + GVA+ W++PR
Sbjct: 43 LRWSVATVAVSLALFLAAALAEIGGGWLVWQAVREGKPS-WWALLGSLVLVLYGFIPTWQPVD----EFGRTYAVYGGVFIVLSYLWGWLVDGMRMDAGDWIGSIVAVIGVAIAWFWPR 156
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: A0A7S2TT53_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TT53_9EUKA) HSP 1 Score: 126 bits (316), Expect = 1.400e-34 Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 3
Query: 114 LVRMIILTVAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYP 470
+V L V A+F+ AGL EIGGGW+VWQAVRE +P WW + G ++L YGF+ P D +FG+ +AVYGG+FIAMS GW A+FDG++ D GDY G+ + L GV V+ ++P
Sbjct: 1 MVEWTPLLVVHVAALFIFAGLAEIGGGWMVWQAVREGKPW-WWALIGSIILVGYGFIPPLQPLD----DFGKLYAVYGGVFIAMSFGWAAIFDGYKPDMGDYIGSAIALVGVGVVLFWP 114
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: A0A2K3DT52_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DT52_CHLRE) HSP 1 Score: 127 bits (319), Expect = 1.420e-34 Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 3
Query: 138 VAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 473
V W++ VF+LAGL EIGGGWL WQ +R K+P ++ V G +LL AYG V P L P+ A F R +AVYGG+FI MS GWG DG + D GD+AGA + LAGV + W++PR
Sbjct: 47 VFWTLGVFILAGLAEIGGGWLCWQTIRNKKPWYYY-VGGAILLVAYG-VIPTLQPE--GASFARVYAVYGGVFIIMSYGWGWAVDGDKPDTGDWAGAAIALAGVGLAWFWPR 154
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: A0A8J4GIW8_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4GIW8_9CHLO) HSP 1 Score: 127 bits (318), Expect = 1.600e-34 Identity = 64/112 (57.14%), Postives = 78/112 (69.64%), Query Frame = 3
Query: 138 VAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 473
V W++ VF+LAGL EIGGGWLVWQ VR K+P ++ V G L+L AYG V P L P+ A F R +AVYGGIFI MS WG V DG R D GD+ G+ + L GVAV W++PR
Sbjct: 39 VFWTLGVFILAGLAEIGGGWLVWQTVRNKKPW-FYFVGGALVLVAYG-VIPTLQPE--GASFARVYAVYGGIFIIMSYCWGWVVDGDRPDKGDWVGSAIALTGVAVAWFWPR 146
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Match: A0A518L6Y1_9BACT (UPF0060 membrane protein TBK1r_47860 n=1 Tax=Planctomycetes bacterium TBK1r TaxID=2527963 RepID=A0A518L6Y1_9BACT) HSP 1 Score: 125 bits (313), Expect = 3.230e-34 Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 3
Query: 123 MIILTVAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 473
M L + S+ +FVLAGLCEIGGGWLVWQ++RE +P+ WW V G ++L YG ++P + +A FGR +AVYGG FI +SL WG FDG R D D GA + L GV VM ++PR
Sbjct: 1 MTTLAILRSLILFVLAGLCEIGGGWLVWQSLREHKPA-WWGVSGGVILMLYG-----VIPTLQTAHFGRIYAVYGGFFIVLSLLWGWYFDGDRPDRFDVIGAAIALVGVCVMMYWPR 111 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8822.20310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8822.20310.1 >prot_Ecto-sp13_S_contig8822.20310.1 ID=prot_Ecto-sp13_S_contig8822.20310.1|Name=mRNA_Ecto-sp13_S_contig8822.20310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp MIILTVAWSIAVFVLAGLCEIGGGWLVWQAVREKRPSRWWIVPGVLLLTAback to top mRNA from alignment at Ecto-sp13_S_contig8822:2930..5504+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8822.20310.1 ID=mRNA_Ecto-sp13_S_contig8822.20310.1|Name=mRNA_Ecto-sp13_S_contig8822.20310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8822:2930..5504+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8822:2930..5504+ >mRNA_Ecto-sp13_S_contig8822.20310.1 ID=mRNA_Ecto-sp13_S_contig8822.20310.1|Name=mRNA_Ecto-sp13_S_contig8822.20310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8822:2930..5504+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |