prot_Ecto-sp13_S_contig8817.20303.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8817.20303.1
Unique Nameprot_Ecto-sp13_S_contig8817.20303.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length794
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8817.20303.1 vs. uniprot
Match: D7G0M4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M4_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 6.730e-125
Identity = 735/794 (92.57%), Postives = 741/794 (93.32%), Query Frame = 0 
Query:    1 MESSGDWKAVLRELDAAEGRAAATXXXXXXXXXXXXXAVAPRAEPMTVYMYTACITTMSKCKRWREALDVLDRMMAAXXXXXXXGELTPNVNTMSAXXXXXXXXXXXXXXXXXXXXXXTIGDEAGGLKPDXXXXXXXXXXXXXXXXXXXXXXXXDDLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDPDVPVDVASFNXXXXXXXXXXXXXXXXXXXXEITTEGLAPGLVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISMLRVGXXXXXXXXXXXXXXXXXXXXXXXXXRFLREMPQAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEATSSPSSSPWWSSSGAPRTGETGXXXXXXXXXXXXXXXNVGGPARSARLDRVPAAAAPLSGRXXXXXXXXXXXXXXXXXXXXGEAETGRYFYCRPNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEADVGLETPSSSTTTTTPRPDVTTXXXXXXXXXXXXXXXXXXXXXXXMPTVGITPSRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGSGGY-VVRXXXXXXXXXXXXXXXXXXXXXXXXXRAEAASLGLLPVGESGDAAGLSSGLTVDNIEGEMTTTRFPVTPAEIASGSFAKPSRGKLRHSAGAEAAAGENTTPV 793
            MESSGDWKAVLRELDAAEGRAAAT XXXXXXX     AVAPRAEPMTVYMYTACITTMSKCKRWREAL+VLDRMMAA       GELTPNVNTMSAXXXXXXXXXXXXXXXXXXXXX TIGDEAGGLKPDXXXXXXXXXXXXXXXXXXXXXXXXDDLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDPDVPVDVASFNXXXXXXXXXXXXXXXXXXXXEITTEGLAPGLVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISMLRVGXXXXXXXXXXXXXXXXXXXXXXXXXRFLREMPQAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ATSSP+SSPW             XXXXXXXXXXXXXXXNV GPA SAR  RVPAAAAP+   XXXXXXXXXXXXXXXXXXXX EAETGR+FYCRPNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEADVGLE PSSSTT TT RPDVTTXXXXXXXXXXXXXXXXXXXXXXX PTVGITPS ISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGSGG   VRXXXXXXXXXXXXXXXXXXXXXXXXX AEAASLGLLP GESGDAAGLSSGLTVD  EGE+ TTRFPVTPAEIASGSFAKPSRGKLR  AG EAAAGE+TTPV
Sbjct:   56 MESSGDWKAVLRELDAAEGRAAATAXXXXXXXA----AVAPRAEPMTVYMYTACITTMSKCKRWREALEVLDRMMAAAQEEGGGGELTPNVNTMSAXXXXXXXXXXXXXXXXXXXXXKTIGDEAGGLKPDXXXXXXXXXXXXXXXXXXXXXXXXDDLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDPDVPVDVASFNXXXXXXXXXXXXXXXXXXXXEITTEGLAPGLVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISMLRVGXXXXXXXXXXXXXXXXXXXXXXXXXRFLREMPQAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSSPTSSPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVEGPAISARSGRVPAAAAPVXXXXXXXXXXXXXXXXXXXXXXXREAETGRFFYCRPNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEADVGLEIPSSSTTRTTSRPDVTTXXXXXXXXXXXXXXXXXXXXXXXXPTVGITPSGISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGSGGGDAVRXXXXXXXXXXXXXXXXXXXXXXXXXXAEAASLGLLPAGESGDAAGLSSGLTVDANEGEVVTTRFPVTPAEIASGSFAKPSRGKLRRPAGVEAAAGESTTPV 845
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8817.20303.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0M4_ECTSI6.730e-12592.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..81
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 464..571
coord: 280..373
coord: 162..298
coord: 584..725
coord: 48..193
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 198..298
e-value: 5.2E-24
score: 87.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 446..579
e-value: 2.9E-24
score: 88.0
coord: 580..735
e-value: 4.3E-35
score: 123.5
coord: 299..388
e-value: 3.5E-23
score: 84.4
coord: 37..197
e-value: 4.4E-33
score: 116.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 223..283
e-value: 2.2E-4
score: 21.2
coord: 152..213
e-value: 2.5E-5
score: 24.3
coord: 466..515
e-value: 0.0034
score: 17.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 274..308
e-value: 7.7E-5
score: 20.6
coord: 542..568
e-value: 6.7E-6
score: 23.9
coord: 204..235
e-value: 6.6E-4
score: 17.7
coord: 471..504
e-value: 5.8E-5
score: 21.0
coord: 345..377
e-value: 2.3E-4
score: 19.1
coord: 589..621
e-value: 5.1E-4
score: 18.0
coord: 135..165
e-value: 8.3E-4
score: 17.4
coord: 623..657
e-value: 1.0E-6
score: 26.5
coord: 49..76
e-value: 0.0012
score: 16.9
coord: 310..344
e-value: 5.6E-8
score: 30.5
coord: 658..687
e-value: 5.5E-4
score: 17.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 93..121
e-value: 0.001
score: 19.1
coord: 541..566
e-value: 7.5E-5
score: 22.7
coord: 49..75
e-value: 0.032
score: 14.5
coord: 589..617
e-value: 0.028
score: 14.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 307..356
e-value: 1.6E-9
score: 37.8
coord: 620..667
e-value: 1.6E-8
score: 34.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..199
score: 8.649
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 538..568
score: 9.186
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 468..502
score: 9.909
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 47..81
score: 7.914
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 308..342
score: 13.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 656..690
score: 9.46
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 503..537
score: 7.739
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 694..728
score: 8.122
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 201..235
score: 10.753
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 343..377
score: 11.027
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 586..620
score: 10.358
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 130..164
score: 9.219
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 236..270
score: 8.177
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 90..124
score: 9.186
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 621..655
score: 11.553
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 271..307
score: 10.238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8817contigEcto-sp13_S_contig8817:1648..6042 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8817.20303.1mRNA_Ecto-sp13_S_contig8817.20303.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8817 1648..6051 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8817.20303.1 ID=prot_Ecto-sp13_S_contig8817.20303.1|Name=mRNA_Ecto-sp13_S_contig8817.20303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=794bp
MESSGDWKAVLRELDAAEGRAAATAAAAAAATASTSAAVAPRAEPMTVYM
YTACITTMSKCKRWREALDVLDRMMAAAEEEGGGGELTPNVNTMSAVITA
CGRCGQGKAALEVLERMKTIGDEAGGLKPDLHCLSAAIDAAGGAGEWEAA
LRVLDDLRAAGIKPDGFVYRAAITACGNGDKLEMALKLLRDMREDPDVPV
DVASFNAAITACGRCKQWQKAISLLREITTEGLAPGLVSYGAAITACATC
KQGDAAVELLRELPIVGITPDSMVYTSAISACGRAGHWERAVGLFREISM
LRVGFRPDAVSYSAVITALGEGGQWEEALRFLREMPQAGVKPDVVCFNSA
VTACAKSGRWEEAGGLLREMLEATSSPSSSPWWSSSGAPRTGETGGGVAA
TAAAGAAQRRNVGGPARSARLDRVPAAAAPLSGRRRGDGGGGNSGSSSSS
SSSSGEAETGRYFYCRPNVATFNAAMQAAGSAGEWREALTLLRGMLAEKI
APNATSYTSAIAACGFAGEWEQALNLLRALKKGEGTLGVGAYNAAIKACG
EAGRFEEAVGVLREMEADVGLETPSSSTTTTTPRPDVTTYTAAIAACGRG
REYRRAVLLLREMPTVGITPSRISYNAAMTACGRSGQWELSLSLLREMAK
LGVSPDVVSYNSVMSALGDAGEWERAVGLLGEISGSGGYVVRPDYVSFAT
AIRACEMAGRLDDAAGLRAEAASLGLLPVGESGDAAGLSSGLTVDNIEGE
MTTTRFPVTPAEIASGSFAKPSRGKLRHSAGAEAAAGENTTPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat