mRNA_Ecto-sp13_S_contig10175.203.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10175.203.1
Unique NamemRNA_Ecto-sp13_S_contig10175.203.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10175.203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10175contigEcto-sp13_S_contig10175:555..3100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons3
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.9196138-CDS-Ecto-sp13_S_contig10175:555..5791681462512.9196138-CDS-Ecto-sp13_S_contig10175:555..579Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10175 556..579 -
1681462512.9294412-CDS-Ecto-sp13_S_contig10175:1496..16471681462512.9294412-CDS-Ecto-sp13_S_contig10175:1496..1647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10175 1497..1647 -
1681462512.937299-CDS-Ecto-sp13_S_contig10175:3008..31001681462512.937299-CDS-Ecto-sp13_S_contig10175:3008..3100Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10175 3009..3100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10175.203.1prot_Ecto-sp13_S_contig10175.203.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10175 556..3100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10175.203.1

>prot_Ecto-sp13_S_contig10175.203.1 ID=prot_Ecto-sp13_S_contig10175.203.1|Name=mRNA_Ecto-sp13_S_contig10175.203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
ASLSNTNTREDKPGAAHSSRGSMPVCGIPCSLSLKQQSPEVFGSSRLLHQ
KPYVLLRACLAFNSLYWLIRSMSVFGNAHWLLYLTHWTF
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mRNA from alignment at Ecto-sp13_S_contig10175:555..3100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10175.203.1 ID=mRNA_Ecto-sp13_S_contig10175.203.1|Name=mRNA_Ecto-sp13_S_contig10175.203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10175:555..3100- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCGCTTTCTAACACGAACACTCGAGAAGACAAGCCAGGCGCAGCACA
CTCCTCACGAGGATCCATGCCGGTCTGCGGCATTCCTTGCAGGTGATTTT
GCTCGCAGAGCAACCCGTGGTGCTACACGGGGCGTCCGCGACGCATGGGC
GGTGTAATAGCGTTCGCACGTTCGTTGCGGATCCGTTGATGCTATGTCAA
ACGCTGTTGGTGTGTTGTTTTTGGTACACGCAGTACGCTCACAGGACAGT
AGACGTTTTAAAGCGGGGTGGGCAATTCCTCGCGGTTCTCTGTCAGCCTC
TCGGTTTCGAATTGGAAGAGAAAATGCAAGTCAAGACTCGACGTGTATTG
GGCGAGAAAATGCATTGCTTTACATTTGTATCAATCGAGACAGCAGTGTC
AGCAGCGCGGAACATGCCCTCGATCGGAGATTTGGAGATGCAGTCGATGT
GAGACAACAACAGCATCAACAATCGATGGATGTGCTTGCCTCCATCCATC
TGTCCGTAAAATAGCTCCCTGTCTCTCTGTCTCCCTCTGAGGCCGAAGGA
AGGACATGCAGATGCAGAGAAATCAATGTCAAACATCTGACGGTGTTTCC
TTCCCCACCCCTCATTGTACACAGCAGTTTGACGTTTGAGACCAGATTCC
TCAGTTTTACATATGCATTATCGGATTAACTGCGTTTGACACGTTGATAG
ATACTGCCGTCCTTCCACATACACCGTGATACCCAGGACAAAGCGTTCGT
TTCATGTTGCCGGTAGAGACCACACGTATATCACCGCATAGCGGCAAACC
CGTCTAAAAGTGATCTCAAGGGGATATGCGTCAAAACAAAAAGCTCGTAC
ATGCAGTGATTGAACGGCAGGATTGCGTAGGATACCACACCCCCCTCGAC
CTACTCTCAGTATGTACAACTAGCCTTCGCAGGTTTGTTGCATTCAGCAA
ACATGTTGGATAAAGCGTAGAAGTACAATCGGCCTACGTCGCAAAGTCTA
TGTGGCATCTACTCTCCCAACGCAAACAATACATAGTCGGTCGCGGTCCC
GACAACGGCGGGCGATGCACGTGTCTCGACGAGAACTTGCCCAGGACGTA
TGCATACGTATCGTTTGTCGTGTGCTGACACCCTCTTCCTCGTGGGGCGG
TGATCTCATCGGCTTTTGAAAATCGGGTGCAGTACATGCACATCTTACGC
AGCCGACGGTAGGGCGGATACCTACCACCTTGGCTTGCATGAACAAACCC
AACTGCGCTACCCATTTTTTGCCTTCTTTCCGCCCACGCGTCCGTCCCCT
CTGCGCCCCCCCCCCCCCCCCCTGTCGGAATTGGCTATTCGGCATTTCCA
TTCGTGCGTGTTCGCGCTGCGGACAAATGCGACGGAAATGAACATAACCG
GAACGATCCCATCAAATTATCATCATCATCATCATCATCATCATCATCAC
CAGCCTCTCGCTGAAGCAACAGAGCCCCGAGGTGTTCGGCTCGTCGCGGC
TGCTGCACCAGAAGCCCTATGTCCTGCTGCGCGCTTGCCTGGCGTTCAAC
AGCCTTTACTGGCTCATCCGCTCCATGTCCGTCTTTGGCAACGCCCACTG
GCTGGTGAGTGGAGGGTGGGTGGGCGATGCGCAACCGCTGCTGCAGTGTT
GTTGATGTTGTTGGCGATGGTGAACTTTTGCCTGTTTGCGCTCTTGTGTA
TGTCGTTGTTGTTGTTGGTGGTGGCTGTTGCATATTCGCTGGGTGCACAA
TCATTGGTGATACTGTGTAGCTCTCGAGGGCGGACTACCAGCCGTGGTGA
TGGTTGTCGTCGTCGTCATCATTTTGTTGTTTTGGTCGTTTGAATCACGT
CTTCACTTTGTACGGCAAGGTCGTTGCACTTCTTTCGCGACCGTTGGGGA
CGTGACAATTTTGGTAGCGGCGTCAGTTGGTGCGTTTTGGATATAGGGAC
CGCGACTCCAATCGAGGAAAAAACTGGGCCAACAGATGAAGAGCTGGGTG
TGTTCCTCTGCTTGTTGCCTTTTTCCATAGATAGAGCACCACCACCAAAC
ATCCATCCACAGGGTCAATTTCGAAGCTCGGCCTAGCAGGGTACGCAGCA
GGGCTTTTTCTTCTGCCAGTGGCATCTTTCCTGGTCGGGGGAAAGAACGA
AAGCGCGTGCGTGACGACGACGCCGTCCGACAAAGGCAGACAGGCCCTTC
AGACAAGGCACCCGCAACGCGTACCCCCCCCCCCACCCGCCGCGCCCCCA
GCGTGCGTTTTCAGTCGGGACATTTGGGCCCTGGTCGTTGCTACCGCTCC
CGCTCGTGGTTCTTCTATACACACATACATGACAGCGAAGGTTTTCTCCT
TGGTGACCCCTTTTTACCTCTTGCTGGTCCCTTGTACTTCTTACTGACTC
CTGTACATTTTACCGTCGGACAACCAACCGTCCTGCCCGTCTTGCCGGCT
ATCCTTGTCGCAATCATCGGCTCCCTATCGCCACCGCCGCCGCACCGCCG
TGGCCGCGTTTTTTTCTGCAGCTCTACCTCACCCACTGGACGTTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10175:555..3100-

>mRNA_Ecto-sp13_S_contig10175.203.1 ID=mRNA_Ecto-sp13_S_contig10175.203.1|Name=mRNA_Ecto-sp13_S_contig10175.203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10175:555..3100- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCGCTTTCTAACACGAACACTCGAGAAGACAAGCCAGGCGCAGCACA
CTCCTCACGAGGATCCATGCCGGTCTGCGGCATTCCTTGCAGCCTCTCGC
TGAAGCAACAGAGCCCCGAGGTGTTCGGCTCGTCGCGGCTGCTGCACCAG
AAGCCCTATGTCCTGCTGCGCGCTTGCCTGGCGTTCAACAGCCTTTACTG
GCTCATCCGCTCCATGTCCGTCTTTGGCAACGCCCACTGGCTGCTCTACC
TCACCCACTGGACGTTC
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