mRNA_Ecto-sp13_S_contig8811.20300.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8811.20300.1
Unique NamemRNA_Ecto-sp13_S_contig8811.20300.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8811.20300.1 vs. uniprot
Match: D7FQ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ87_ECTSI)

HSP 1 Score: 510 bits (1313), Expect = 3.080e-175
Identity = 249/265 (93.96%), Postives = 258/265 (97.36%), Query Frame = 1 
Query:  205 MDSGGKPVGVEGSPLFFDSDNISISSTRRSGVYQDGLTAEEVSSVATVTGTATTVSLVATNYLGDGSISTFEPSTIVEVGNETVRLDMQISDWSFCTPFGRDGGRRCMAEPQDIFLENEGALPLPPAPPPPHTLLIPRCDGETVATFRFVCDPRLVECADIVTVKYYLGEADQDPGQAPNTATIGVARGSGENGTSTSSSGALEEFWGTGMYERNLTSAEVGSFLNVSSLTPGLDYVFWSVWEHRNGSAPESNSRDFDLSRVQYW 999
            MDS GKPVGVEGSPLFFDSDNIS+SSTRRSGVYQDGL AEEVSSVAT TGTATTVSLVATNYLGDG+ISTFEPST+VEVGNETVRLD++I DWSFCTPFGRDGGRRCMAEPQDIFL+NEGALPLPPAPPPPHTLLIPRCDGETVATFRFVCDPRLVECAD+V+VKYYLGEADQDPGQAPNTATIGVARGSGENGTSTSSSGALEEFWGTG+YERNLT AEVGSFLNVSSLTPGLDYVFWSVWEH NGSAPESNSRDFDL RVQYW
Sbjct:    1 MDSDGKPVGVEGSPLFFDSDNISVSSTRRSGVYQDGLDAEEVSSVATTTGTATTVSLVATNYLGDGNISTFEPSTLVEVGNETVRLDVRIRDWSFCTPFGRDGGRRCMAEPQDIFLQNEGALPLPPAPPPPHTLLIPRCDGETVATFRFVCDPRLVECADVVSVKYYLGEADQDPGQAPNTATIGVARGSGENGTSTSSSGALEEFWGTGVYERNLTRAEVGSFLNVSSLTPGLDYVFWSVWEHGNGSAPESNSRDFDLPRVQYW 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8811.20300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ87_ECTSI3.080e-17593.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8811contigEcto-sp13_S_contig8811:3725..6652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1452
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_007050.1
Cds size1452
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464154.036038-CDS-Ecto-sp13_S_contig8811:3724..39311681464154.036038-CDS-Ecto-sp13_S_contig8811:3724..3931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8811 3725..3931 +
1681464154.0456343-CDS-Ecto-sp13_S_contig8811:4256..43761681464154.0456343-CDS-Ecto-sp13_S_contig8811:4256..4376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8811 4257..4376 +
1681464154.0542698-CDS-Ecto-sp13_S_contig8811:4629..47401681464154.0542698-CDS-Ecto-sp13_S_contig8811:4629..4740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8811 4630..4740 +
1681464154.0623014-CDS-Ecto-sp13_S_contig8811:5361..59211681464154.0623014-CDS-Ecto-sp13_S_contig8811:5361..5921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8811 5362..5921 +
1681464154.0708263-CDS-Ecto-sp13_S_contig8811:6198..66521681464154.0708263-CDS-Ecto-sp13_S_contig8811:6198..6652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8811 6199..6652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8811.20300.1prot_Ecto-sp13_S_contig8811.20300.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8811 3725..6652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8811.20300.1

>prot_Ecto-sp13_S_contig8811.20300.1 ID=prot_Ecto-sp13_S_contig8811.20300.1|Name=mRNA_Ecto-sp13_S_contig8811.20300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=484bp
MRHLLHALPAAALLTVLGGTSGAAAQTQPAMVESFAHSALLSVRVIDGEP
NDAGDHEAMAVVVSTITEMDSGGKPVGVEGSPLFFDSDNISISSTRRSGV
YQDGLTAEEVSSVATVTGTATTVSLVATNYLGDGSISTFEPSTIVEVGNE
TVRLDMQISDWSFCTPFGRDGGRRCMAEPQDIFLENEGALPLPPAPPPPH
TLLIPRCDGETVATFRFVCDPRLVECADIVTVKYYLGEADQDPGQAPNTA
TIGVARGSGENGTSTSSSGALEEFWGTGMYERNLTSAEVGSFLNVSSLTP
GLDYVFWSVWEHRNGSAPESNSRDFDLSRVQYWQCPGTTIERNFEVGTSL
SISLAVNGSTALVPLCGDPVSASSPDSSNTGPTSSSASSSSGSSSCQKVG
ADGVATETSGPSRRLSDAGDESHPSPALPARQGRSYRLLQEGQGANASLD
ETEGGAGWAWDSDGPIFGLGELSRIRLSSHVLLL
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mRNA from alignment at Ecto-sp13_S_contig8811:3725..6652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8811.20300.1 ID=mRNA_Ecto-sp13_S_contig8811.20300.1|Name=mRNA_Ecto-sp13_S_contig8811.20300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2928bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8811:3725..6652+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACATCTGTTGCATGCACTTCCCGCCGCAGCACTGCTTACCGTGCT
CGGCGGAACGTCTGGAGCCGCCGCCCAAACACAGCCTGCGATGGTCGAGT
CGTTTGCGCACAGCGCGCTCCTTTCAGTGCGTGTCATTGACGGAGAGCCA
AACGATGCCGGGGACCATGAAGCCATGGCAGTGGTCGTGTCGACAATCAC
AGAGATGGTGAGGGTACAGTAGCGTGTGCATGGATGGATATATATTGCCC
GTACCATCAGGACCCCGTCTCTGTCTGGATCAAATCAAAGATACACTTGT
GTATGATCGCATATACTTGCCATAGCCCGTGTGCGGGACAGATGTCATGG
ACAATTCCATGTCTGTCCATAGATATCATCACTCGACGTCGAGGAGTGTT
TTCGAGGAATTGTCTTCGGCCAGGCGCACGACGCCTAGACAAGGGTTCAG
TGCCTCGAGCCTGGCACTTAGGCTATGCAGTGACAGCCGCATCATTCAGT
GCATATTTCTGTTGTACTGGTCTGACCAAAAGGACTCCGGCGGCAAGCCG
GTTGGGGTCGAGGGATCTCCGCTCTTCTTCGACAGTGACAACATCTCCAT
CTCCTCAACAAGACGAAGCGGCGTATACCAAGATGGTCTTACTGCAGAAG
AGGTATGTAGGTTAGACCGACGGCTGTGAGGGCGACAGTTGTTCCGAAAC
GCGTCGCACTATCTTGAGTCTGTAACTAGGGGCCCGCGCAGTCTCGTCTC
ATGTTCGTAAGAAACATATAGACCACAAATTTGTCATTGACTCTTTTTGG
GAGAGAATGGAGGGTCATTGAATTTGTGCAGCGTCGTACGAAACACTGGA
CGCATAAACGGTTAGAGGGCTACGTAGACTGAGGATATTTCGGAATGATG
CGCAGGTGTCCTCGGTAGCCACAGTAACGGGCACGGCGACGACGGTAAGC
TTGGTTGCTACCAACTATCTTGGCGACGGAAGCATCTCAACCTTCGAACC
GTCAACAATCGTTGAGGTGAGCGAGAAGAAACATAGAGAAAGTGGGTGAG
TTCCTGCTGCTGTCCTATTGAGCGAGATAATCAATAGGACAACCATAGAA
GCAATTGTGATCATCACGAGCGAAGAAAATGTTTTGCCTGCGTGTTCGTC
TTTTTTCTCCGTCGCCTACGATATGCACTTAGGCCCTGCTTTTGCTTTTG
CCGCCAGGCATTTCTCTACACATATCAACACGCAGAGCACCATGATATCC
TTGGCATCCACCCCTTGAACCGTGATAACATGCACAAAAGCTAACGACGT
GTTCAGACTTTTCCATCGTGAACTTCGACGTGCTTACGAACATGAGCGAA
AAAAAATTGTTGCGGCAGGAAGCCTTTTGCTGTATCAATACCTTCGACCT
CATTCAGACAAGATTCGCTGTCCATCTACCCTCGGTGTTGGTGATAACTG
TCCCCCAAAAGCACCGAACTATAAGCCGAGACGTAGATCGTCAGAGAAAC
GTTTCATCCTTGCACACAACACAGCTCAAGATCAAAATCATTCCGCCCAG
GCATCGCCCATACTTCTCGCAACACGCTTACCTCAAGCTGTGCCTACGGG
CCCTCGGCGCTACGACCGCGCAACACACTTGTCGCAGGTCGGGAACGAGA
CCGTGAGACTGGATATGCAGATCAGCGACTGGTCATTTTGCACTCCGTTC
GGACGGGATGGGGGCCGCCGGTGCATGGCCGAGCCACAAGACATTTTCCT
CGAGAACGAGGGAGCCCTCCCGCTGCCCCCCGCCCCGCCGCCTCCACACA
CCCTTCTCATCCCTCGCTGTGACGGGGAAACAGTAGCCACCTTCCGCTTC
GTGTGCGACCCCAGACTGGTAGAGTGCGCCGACATCGTTACGGTGAAGTA
CTACCTGGGAGAGGCCGACCAAGACCCCGGCCAAGCTCCCAACACGGCGA
CGATTGGGGTTGCGAGGGGCAGCGGCGAGAATGGCACCAGCACTAGCAGC
AGCGGCGCGCTTGAGGAGTTTTGGGGAACCGGCATGTACGAGCGCAACCT
CACCAGCGCCGAGGTGGGCTCGTTCCTGAACGTGAGCAGTCTCACGCCGG
GTCTGGACTACGTCTTTTGGTCGGTTTGGGAACACAGGAACGGCTCAGCC
CCGGAATCCAACAGCAGAGACTTCGACCTTTCAAGGGTGCAATATTGGTG
AGCGAGCGAGGAGTGAGAAGGATTGATGTCAAATTGCAGACTGAGCAGAG
GGGTAGAATGTCGGTGCAAGAACGAAACTGACTAGAAAAGCAGCGAGTGG
GAAATAGTAAAGGGTCTGGTAGATGCTTGTTAGTTTGAATTTCAGTAGTT
CTTGAGGTTAACCTCGCCTCCAGCTGCAGGCACGCACTAAGTCTGCGGGA
ACCTATCGATGCCCAACTTGATGACCAACGTGACCGCTCCTTGAACCAAT
TCCATCCTCCTTATTTGCAAGCAGGCAGTGTCCAGGCACGACGATCGAGC
GGAACTTCGAAGTCGGAACATCGTTGAGCATTTCACTAGCCGTGAATGGC
TCCACCGCTCTGGTTCCCTTGTGCGGCGACCCTGTCTCTGCATCGTCACC
AGACAGCAGCAATACTGGTCCGACAAGCAGCTCCGCGTCTTCTTCTAGCG
GCAGCAGTAGTTGCCAGAAAGTCGGTGCGGACGGTGTTGCTACCGAAACT
TCTGGTCCCAGCAGAAGGCTTAGCGATGCAGGCGACGAAAGCCACCCCTC
TCCTGCTCTCCCCGCTCGACAAGGTCGAAGCTATCGCCTGCTTCAAGAAG
GTCAAGGTGCCAATGCTTCCCTCGACGAAACGGAAGGAGGGGCCGGCTGG
GCGTGGGACTCGGATGGGCCCATCTTCGGACTCGGAGAGCTCTCCAGGAT
TCGTCTCTCGAGTCATGTTTTGTTGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8811:3725..6652+

>mRNA_Ecto-sp13_S_contig8811.20300.1 ID=mRNA_Ecto-sp13_S_contig8811.20300.1|Name=mRNA_Ecto-sp13_S_contig8811.20300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8811:3725..6652+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACATCTGTTGCATGCACTTCCCGCCGCAGCACTGCTTACCGTGCT
CGGCGGAACGTCTGGAGCCGCCGCCCAAACACAGCCTGCGATGGTCGAGT
CGTTTGCGCACAGCGCGCTCCTTTCAGTGCGTGTCATTGACGGAGAGCCA
AACGATGCCGGGGACCATGAAGCCATGGCAGTGGTCGTGTCGACAATCAC
AGAGATGGACTCCGGCGGCAAGCCGGTTGGGGTCGAGGGATCTCCGCTCT
TCTTCGACAGTGACAACATCTCCATCTCCTCAACAAGACGAAGCGGCGTA
TACCAAGATGGTCTTACTGCAGAAGAGGTGTCCTCGGTAGCCACAGTAAC
GGGCACGGCGACGACGGTAAGCTTGGTTGCTACCAACTATCTTGGCGACG
GAAGCATCTCAACCTTCGAACCGTCAACAATCGTTGAGGTCGGGAACGAG
ACCGTGAGACTGGATATGCAGATCAGCGACTGGTCATTTTGCACTCCGTT
CGGACGGGATGGGGGCCGCCGGTGCATGGCCGAGCCACAAGACATTTTCC
TCGAGAACGAGGGAGCCCTCCCGCTGCCCCCCGCCCCGCCGCCTCCACAC
ACCCTTCTCATCCCTCGCTGTGACGGGGAAACAGTAGCCACCTTCCGCTT
CGTGTGCGACCCCAGACTGGTAGAGTGCGCCGACATCGTTACGGTGAAGT
ACTACCTGGGAGAGGCCGACCAAGACCCCGGCCAAGCTCCCAACACGGCG
ACGATTGGGGTTGCGAGGGGCAGCGGCGAGAATGGCACCAGCACTAGCAG
CAGCGGCGCGCTTGAGGAGTTTTGGGGAACCGGCATGTACGAGCGCAACC
TCACCAGCGCCGAGGTGGGCTCGTTCCTGAACGTGAGCAGTCTCACGCCG
GGTCTGGACTACGTCTTTTGGTCGGTTTGGGAACACAGGAACGGCTCAGC
CCCGGAATCCAACAGCAGAGACTTCGACCTTTCAAGGGTGCAATATTGGC
AGTGTCCAGGCACGACGATCGAGCGGAACTTCGAAGTCGGAACATCGTTG
AGCATTTCACTAGCCGTGAATGGCTCCACCGCTCTGGTTCCCTTGTGCGG
CGACCCTGTCTCTGCATCGTCACCAGACAGCAGCAATACTGGTCCGACAA
GCAGCTCCGCGTCTTCTTCTAGCGGCAGCAGTAGTTGCCAGAAAGTCGGT
GCGGACGGTGTTGCTACCGAAACTTCTGGTCCCAGCAGAAGGCTTAGCGA
TGCAGGCGACGAAAGCCACCCCTCTCCTGCTCTCCCCGCTCGACAAGGTC
GAAGCTATCGCCTGCTTCAAGAAGGTCAAGGTGCCAATGCTTCCCTCGAC
GAAACGGAAGGAGGGGCCGGCTGGGCGTGGGACTCGGATGGGCCCATCTT
CGGACTCGGAGAGCTCTCCAGGATTCGTCTCTCGAGTCATGTTTTGTTGT
TG
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