mRNA_Ecto-sp13_S_contig88070.20293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88070.20293.1
Unique NamemRNA_Ecto-sp13_S_contig88070.20293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: D7FZG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZG0_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.020e-21
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   16 RNFFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            RNFFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP
Sbjct:  103 RNFFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: A0A835YS22_9STRA (Putative endoplasmic oxidoreductin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS22_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-15
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   22 FFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            FFKYFKV+L K CPFW+EDGQCM RDCSVCEC P+EIP
Sbjct:   80 FFKYFKVDLNKPCPFWQEDGQCMYRDCSVCECDPKEIP 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: A0A7S1XNL3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNL3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.320e-15
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   22 FFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            FFKYF+VNLEK CPFWE+DG C++RDCSVCEC P+E+P
Sbjct:  145 FFKYFRVNLEKGCPFWEDDGLCVLRDCSVCECEPKEVP 182
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: A0A7S1TVZ6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVZ6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.570e-15
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   22 FFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            FFKYF+VNLEK CPFWE+DG C++RDCSVCEC P+E+P
Sbjct:  145 FFKYFRVNLEKGCPFWEDDGLCVLRDCSVCECEPKEVP 182
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: A0A7R9U445_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U445_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.790e-15
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   22 FFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            FFKYF+VNLEK C FWEEDG C +RDCSVCEC PEE+P
Sbjct:   90 FFKYFRVNLEKGCQFWEEDGMCSVRDCSVCECDPEEVP 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: A0A7S1CNX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNX9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.070e-13
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   22 FFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            +FKYFKV+L ++CPFW+EDG CM RDC+VCEC P EIP
Sbjct:   47 YFKYFKVDLWRDCPFWQEDGMCMARDCAVCECDPNEIP 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: M2X4W4_GALSU (ERO1-like protein beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X4W4_GALSU)

HSP 1 Score: 72.0 bits (175), Expect = 1.480e-13
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   10 VLRNFFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            V R FF+ FKV+L KECPFW +DGQC +RDCSVC CS +E+P
Sbjct:   87 VQRTFFRIFKVDLSKECPFWPDDGQCALRDCSVCACSEDEVP 128
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: A0A8B7XT40_ACAPL (ERO1-like protein beta isoform X1 n=3 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XT40_ACAPL)

HSP 1 Score: 68.9 bits (167), Expect = 1.800e-12
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 LSNVL-RNFFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            L N+L RN+FK+FKVNL+K+CPFW +DG C +  C+VC C+ E++P
Sbjct:   72 LQNLLTRNYFKFFKVNLDKKCPFWPDDGTCALESCAVCPCTDEQVP 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: A0A8K1C292_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C292_PYTOL)

HSP 1 Score: 68.9 bits (167), Expect = 1.800e-12
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   22 FFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            FF+YFKV+L KECP+W++DG C  RDC+VCEC  EEIP
Sbjct:   99 FFRYFKVDLGKECPYWQDDGMCASRDCAVCECPQEEIP 136
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Match: UPI0003F0EE1D (ERO1-like protein alpha-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0EE1D)

HSP 1 Score: 68.6 bits (166), Expect = 2.400e-12
Identity = 24/40 (60.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   16 RNFFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP 135
            +NFF+++KVNL +ECPFW +DGQC  +DCSV  C+P+E+P
Sbjct:   35 KNFFRFYKVNLHRECPFWPDDGQCAFKDCSVHSCTPDELP 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88070.20293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZG0_ECTSI1.020e-21100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YS22_9STRA1.010e-1581.58Putative endoplasmic oxidoreductin n=1 Tax=Tribone... [more]
A0A7S1XNL3_9STRA2.320e-1576.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1TVZ6_9STRA2.570e-1576.32Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U445_9STRA4.790e-1578.95Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1CNX9_9STRA1.070e-1371.05Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
M2X4W4_GALSU1.480e-1366.67ERO1-like protein beta n=1 Tax=Galdieria sulphurar... [more]
A0A8B7XT40_ACAPL1.800e-1256.52ERO1-like protein beta isoform X1 n=3 Tax=Acanthas... [more]
A0A8K1C292_PYTOL1.800e-1268.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI0003F0EE1D2.400e-1260.00ERO1-like protein alpha-like n=1 Tax=Saccoglossus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88070contigEcto-sp13_S_contig88070:433..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score95.5
Seed ortholog evalue6.7e-18
Seed eggNOG ortholog2880.D7FZG0
Preferred nameERO1LB
Model size135
KEGG koko:K10950,ko:K10976
KEGG Pathwayko04141,ko05110,map04141,map05110
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0006082,GO:0006457,GO:0006458,GO:0006464,GO:0006508,GO:0006518,GO:0006520,GO:0006575,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006915,GO:0006950,GO:0006979,GO:0006986,GO:0007154,GO:0007165,GO:0007204,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008219,GO:0008593,GO:0009266,GO:0009628,GO:0009966,GO:0009987,GO:0010033,GO:0010260,GO:0010467,GO:0010646,GO:0010817,GO:0012501,GO:0012505,GO:0015035,GO:0015036,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016486,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0019471,GO:0019538,GO:0019725,GO:0019752,GO:0022417,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030070,GO:0030154,GO:0030176,GO:0030198,GO:0030425,GO:0030968,GO:0031224,GO:0031227,GO:0031974,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0033500,GO:0033554,GO:0034220,GO:0034599,GO:0034620,GO:0034641,GO:0034975,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0042175,GO:0042221,GO:0042445,GO:0042592,GO:0042593,GO:0042995,GO:0043005,GO:0043062,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045444,GO:0045454,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050873,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051179,GO:0051209,GO:0051234,GO:0051282,GO:0051283,GO:0051480,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0055114,GO:0060401,GO:0060402,GO:0061077,GO:0065007,GO:0065008,GO:0070013,GO:0070059,GO:0070482,GO:0070588,GO:0070838,GO:0070887,GO:0071310,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0097190,GO:0097193,GO:0097447,GO:0097458,GO:0097553,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098827,GO:0120025,GO:0120038,GO:0140096,GO:1901142,GO:1901564,GO:1901605
Exons1
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsCOG5061@1,KOG2608@2759
Cds size135
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.7205122-CDS-Ecto-sp13_S_contig88070:432..5671681464153.7205122-CDS-Ecto-sp13_S_contig88070:432..567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88070 433..567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88070.20293.1prot_Ecto-sp13_S_contig88070.20293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88070 433..567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88070.20293.1

>prot_Ecto-sp13_S_contig88070.20293.1 ID=prot_Ecto-sp13_S_contig88070.20293.1|Name=mRNA_Ecto-sp13_S_contig88070.20293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
LSNVLRNFFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIP
back to top

mRNA from alignment at Ecto-sp13_S_contig88070:433..567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88070.20293.1 ID=mRNA_Ecto-sp13_S_contig88070.20293.1|Name=mRNA_Ecto-sp13_S_contig88070.20293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88070:433..567+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTCGAACGTTCTCAGAAATTTCTTCAAGTACTTCAAGGTTAACTTGGA
GAAGGAGTGCCCCTTCTGGGAGGAGGACGGGCAGTGCATGATGAGAGACT
GCTCGGTTTGCGAGTGCAGCCCCGAGGAGATCCCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88070:433..567+

>mRNA_Ecto-sp13_S_contig88070.20293.1 ID=mRNA_Ecto-sp13_S_contig88070.20293.1|Name=mRNA_Ecto-sp13_S_contig88070.20293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88070:433..567+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTCGAACGTTCTCAGAAATTTCTTCAAGTACTTCAAGGTTAACTTGGA
GAAGGAGTGCCCCTTCTGGGAGGAGGACGGGCAGTGCATGATGAGAGACT
GCTCGGTTTGCGAGTGCAGCCCCGAGGAGATCCCT
back to top