mRNA_Ecto-sp13_S_contig12449.2029.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12449.2029.1
Unique NamemRNA_Ecto-sp13_S_contig12449.2029.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12449.2029.1 vs. uniprot
Match: D7FX91_ECTSI (DUF4485 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX91_ECTSI)

HSP 1 Score: 587 bits (1514), Expect = 9.610e-208
Identity = 367/406 (90.39%), Postives = 374/406 (92.12%), Query Frame = 1 
Query:    1 SPCPPQLHDARRALMGSGRRNNAAHPSYESLDAFFCGCLERVEAAYATLNKAFK-IRVECWIAKLNGPYPLPNVAWRKNRNAFAALLARAVEEVDFREPFNRRPPEGSLPTLAPHLRARIPDRDPFRRSGSDFWLRHRAWLDTSRGLSTRDFANEAAEASRTFQPTRRGSPSLTSQDPLLASPGLQGGGHDAAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--RGPCGSRTTTSKRCPCDPLGKAGFEGGAGGAPRGGXXXXGVEAAGERVGCGHCGCDGERVRALQTMVREQALQLAALRLRQAYRGRAQAAKLQRVRHERCRLTSVRLEEMLARRGGREXXXXXXXXXXXASSSPRPPQLNPPLPGLSK 1209
            SPCPPQLHDARRALMGSGRRNNAAHPSYESLDAFFCGCLERVEAAYATLNKAFK IRVECWIAKLNGPYPLPNVAWRKNRNAFAALLARAVEEVDFREPF+RRPPEGSLPTLAPHLRARIPDR+PF+R+GSDFWLRHRAWLDTSRGLS RDFANEAAEASRTFQPTRRGSPS TSQDP  ASPGLQGGGHDA  D     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A  RGPCG+RTT SKRCPCDPLGKAGFEGGAGGAPRGG    GVEAAGERVGCGHCGCDGERVRALQTMVREQALQLAALRL+QAYRGRAQAA+LQRVRHERCRLTSVRLEEMLARRGGRE           ASSSPRPPQLNPPLPGLSK
Sbjct:    3 SPCPPQLHDARRALMGSGRRNNAAHPSYESLDAFFCGCLERVEAAYATLNKAFKKIRVECWIAKLNGPYPLPNVAWRKNRNAFAALLARAVEEVDFREPFDRRPPEGSLPTLAPHLRARIPDRNPFQRTGSDFWLRHRAWLDTSRGLSGRDFANEAAEASRTFQPTRRGSPSPTSQDPRFASPGLQGGGHDATADTTVIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAARGPCGTRTTKSKRCPCDPLGKAGFEGGAGGAPRGGGTGGGVEAAGERVGCGHCGCDGERVRALQTMVREQALQLAALRLQQAYRGRAQAAELQRVRHERCRLTSVRLEEMLARRGGREQQNRQAEEDQDASSSPRPPQLNPPLPGLSK 408
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12449.2029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX91_ECTSI9.610e-20890.39DUF4485 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12449contigEcto-sp13_S_contig12449:400..4702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score68.6
Seed ortholog evalue7.8e-09
Seed eggNOG ortholog5888.CAK60924
Model size1209
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Domain of unknown function (DUF4485)
EggNOG OGs2CZC2@1,2S9MK@2759
Ec32 ortholog descriptionDomain of unknown function DUF4485
Ec32 orthologEc-26_003990.1
Cds size1209
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12449.2029.1prot_Ecto-sp13_S_contig12449.2029.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12449 400..4702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.7455235-CDS-Ecto-sp13_S_contig12449:399..5521681462662.7455235-CDS-Ecto-sp13_S_contig12449:399..552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12449 400..552 -
1681462662.7622507-CDS-Ecto-sp13_S_contig12449:2041..21491681462662.7622507-CDS-Ecto-sp13_S_contig12449:2041..2149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12449 2042..2149 -
1681462662.7714455-CDS-Ecto-sp13_S_contig12449:2708..32271681462662.7714455-CDS-Ecto-sp13_S_contig12449:2708..3227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12449 2709..3227 -
1681462662.7796478-CDS-Ecto-sp13_S_contig12449:3534..36501681462662.7796478-CDS-Ecto-sp13_S_contig12449:3534..3650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12449 3535..3650 -
1681462662.7892644-CDS-Ecto-sp13_S_contig12449:3967..41181681462662.7892644-CDS-Ecto-sp13_S_contig12449:3967..4118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12449 3968..4118 -
1681462662.7981937-CDS-Ecto-sp13_S_contig12449:4540..47021681462662.7981937-CDS-Ecto-sp13_S_contig12449:4540..4702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12449 4541..4702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12449.2029.1

>prot_Ecto-sp13_S_contig12449.2029.1 ID=prot_Ecto-sp13_S_contig12449.2029.1|Name=mRNA_Ecto-sp13_S_contig12449.2029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=403bp
SPCPPQLHDARRALMGSGRRNNAAHPSYESLDAFFCGCLERVEAAYATLN
KAFKIRVECWIAKLNGPYPLPNVAWRKNRNAFAALLARAVEEVDFREPFN
RRPPEGSLPTLAPHLRARIPDRDPFRRSGSDFWLRHRAWLDTSRGLSTRD
FANEAAEASRTFQPTRRGSPSLTSQDPLLASPGLQGGGHDAAGDTTVIGG
GITSGIATTAGGCCGATAAALSSPAPPPPPNPSSSRIHSGGGSGNNNAAP
CAAAARGPCGSRTTTSKRCPCDPLGKAGFEGGAGGAPRGGGAGGGVEAAG
ERVGCGHCGCDGERVRALQTMVREQALQLAALRLRQAYRGRAQAAKLQRV
RHERCRLTSVRLEEMLARRGGREEQNSQPEEEQDASSSPRPPQLNPPLPG
LSK
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mRNA from alignment at Ecto-sp13_S_contig12449:400..4702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12449.2029.1 ID=mRNA_Ecto-sp13_S_contig12449.2029.1|Name=mRNA_Ecto-sp13_S_contig12449.2029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12449:400..4702- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCCTTGTCCGCCACAGCTACACGATGCGCGCCGCGCGTTGATGGGGAG
CGGCAGGAGGAACAACGCCGCGCACCCGAGCTACGAGAGCCTCGACGCCT
TCTTCTGCGGCTGCTTGGAGCGCGTGGAGGCAGCGTACGCCACTCTGAAC
AAGGCCTTCAAGGTGAGAACGACGTCTTATACTTGTTGTGTAGTCTGCAT
GTGTTTGTTGTCTCGTCTTAGCGCAAGTTGCTCCGACAACTACATATGTA
CATGTGGTCAAGAGCGGAGTGTATCTCTGACGGACGCGTAAGACGAGTAC
ACATTATGTGCATATCCCGGGCTCTGTTGTGCGATTGATTGTTTTGACAA
TGCTCGTTCCCGTATTTTTATTTGTGTTTCGCTTTGCACGCGTTCTTCCG
GACCAAACCCACGCTGAATTGTTTGCACGAAACTCTATATCCTAACGGAC
GGGGGGACTTGGCGCTGGTACGGAATTGATTAGTAAATGGACGCGCATGC
AAAACTTAATTCTCTTCAAGTCTTTGCGTGCGTTCGTGTTGCACGGGTGT
GACTTGCTCCGTCCGTGCGTGCCGAACACACAAGATAAGGGTGGAGTGCT
GGATCGCCAAGCTCAACGGCCCGTACCCACTGCCCAACGTCGCGTGGCGA
AAGAACCGTAACGCCTTCGCCGCTCTCCTCGCCCGTGCCGTGGAAGAGGT
CGACTTCAGAGAGCCGTTCAATAGGCGCCCCCCAGGTTGGTCGAGTGCTC
CTCCTCCCTCTGCCTCGACAGGGGTGCGCGCGGAAGCCGCCGCCCCCCCA
CATCCGCGTGCGCCGCCGCCGTCCCTCCGGGGTTAGTCGTGTATCTTCCT
TCCATAGATCATTGGTTTTCGGCTTGACACCGCGTTTTTGATAAGGTTTT
GTTGCCATCAAGTTCAGTAAATCGAGCGTGTTCTACGATATCTACTGTGT
CCTATTTTTGTGACATCGTCTTCTCACTTGACACTTCACTATTCTGCCAC
ACTCGCCCTGACGTTAGTTGGCGCTCTGTGATCGATCTTTGCGCCACGGC
AGAGGGGAGTCTGCCCACCCTAGCGCCCCACCTCCGAGCCCGCATTCCTG
ACCGAGACCCGTTCCGACGAAGTGGCAGCGACTTCTGGCTGCGGCATAGA
GCTTGGTTGGACACTAGCGTGAGTCGCCTCAAGCAGCTGTGTTTTACGAG
CTATTGTACCGCTCGACGAAGATCGGAGTGGGATGGGGGGGAGGGGTGGA
GGGGAATATGTGGGGTGTTTCCACGGCACTGCGGGGAAAGGGTGCCTGCT
CTGAAATACGTATCACGAAGCCGGGAAACCCAGCGATGTCATGCTTCAAC
CCCACTCAAGGAAGGTGGGCGAATGCTACGGCAGAACGAGACCCTCTCTT
TCGATACAGACACCGCAGAGATGTTCCCCCGGAGACCCCCCCCCCCTGCC
CGTGAAACGTCCACCAATCAATCAGCGAGGCCTTTCTACGAGAGATTTCG
CCAACGAGGCCGCCGAAGCGTCGCGCACTTTTCAGCCGACAAGAAGAGGG
TCGCCATCGCTAACGAGCCAGGACCCCCTGCTCGCGTCGCCCGGGCTGCA
GGGGGGAGGGCACGACGCTGCCGGCGACACCACCGTCATCGGCGGTGGCA
TCACCAGCGGGATTGCTACTACTGCTGGTGGTTGCTGCGGCGCCACCGCG
GCGGCCCTTTCGTCGCCCGCGCCGCCACCGCCGCCGAACCCCTCGTCCTC
GAGGATACACAGCGGCGGCGGCAGCGGCAACAATAACGCCGCGCCGTGCG
CCGCCGCCGCTCGAGGTCCCTGCGGCTCCCGCACCACCACGAGCAAGAGG
TGTCCGTGCGACCCTCTTGGAAAGGCGGGGTTCGAGGGGGGGGCAGGGGG
GGCGCCACGCGGGGGAGGAGCCGGCGGCGGAGTGGAGGCAGCGGGAGAAA
GGGTGGGGTGCGGGCATTGCGGGTGTGACGGAGAGAGAGTGCGGGTGAGG
GGAGAACGATGGGCCGTTGGGTCGCCTGATGCAAGGATACACCGTACGTA
TTGATTGATCGTTCGTGTTGTACCGTAGAACTGTGGTATTGTATTCTGAG
GCGGGTCTCGGTCTGGCGGGCACACCACCGCCCGTCGGCACGGGCATTGA
TACCTTCCTTGTCAGGTTGTGGTATCAGAAACACGCTCGGTGCGATGGAT
TAAGCTGTCGCCGCGCTGGCAAGGCAAGAGCGTAAGATCACATCTACACA
TGCCTATCTGTACTCCTTTCGCCTCTTCTTGCTGTGTTGTCTGAGAAATG
CTCGCGGATATTTTTATTAGGAAGGGAGGGCAATTGCTGGCTGGCTCCAT
CTCACCCGAGGTGCACGCTTGGCCGAAGATCTCGACACAAAACCACGGCC
AACGAAACACAAGAATGCTTGTCTGCGCCTACCTTGAGCACAGCACGCCC
GTGCGGGTTTATGTCTTGTTTTCGCCCACATCCTAGGATTGTTTGTTCCA
AAACAACCACAACAACCACAAACACAACCAACGACGCGACACGACGCACC
CAGGCCCTCCAGACGATGGTCAGGGAACAAGCCCTCCAGCTCGCCGCTCT
TCGCCTTCGGCAAGCGTACCGGGGGAGGGCCCAGGCGGCAAAGCTGCAGC
GTGTACGGCACGTGAGTGACCAGACGGTGAAGGACTGTGAACGAACGAAC
GTGCATGGTTTAATGTATGTATGTATGCTCTGTTTCCAGCTTGTACAACA
ACGGAGCTACTGTAGCTAGCGCACACGCAGAGCGTAGACGGATGGACGCA
CGGCGGGCAAAGCAAGGTGAAAGCACAGACCGGTCGCGGACTGCAGGGAG
GATAAATATCGACTGCTGTGTGTGCCATCGCCTTCTTGGATAAAACGCGA
AACGAACGGGCAACAACAAAAAGAGAAGGGAAAAGGGCGTTCGTTGCGCA
CGCCCATATCTATTCATTCCACACGTTGCAATAGCGCGGCGGAGCAACGC
GTTGCTTGTTTAACTAACGCCACCGCCTTCGAGACGAACGAACGGGAACG
TCTCATGGACAGAAAATACGTAAAAGGCCATCCCGACCTACCTGCAGGCA
TATGTTCGGGGCACGGAAGGGATTGCAAGACTACAGCAAGACGAGGTGCG
AGTGACGGGGGGGGAGCGGAGTGTACTCAATTGTAGTGCAAGCTGCGTAG
TAGTAGTCGTTAGACCATTGACCTCGCATCCTTACAAAGCCGGGACGGAG
CGCGCCGGGTACTCACCGCACCAGGCCCTCATACCACTAAACGCGAAGCG
CCGTGAGGTACAGTACGGGCCCGGAGAAAAGAAACGTCGAAATCGGATCG
AGGCTCAATCCCTTATTTTGCGTCAAAAGACCAGCCGAAGGCGTCCATTT
TCTTCAAAGGCATTTCTTATTCCTTTCGACTGTCGCATCCTCCTGATTCT
ATTATTTCTCGTTTTTTTTTATTTTCTGACTAAGAATATGCGTACAACGA
CACCAAACATTCATGCAGCAGTGGGCAAAGCAGCCCGCGGAGGCGCCGAG
TAGCTGAATAGCGCGGAGGCGGGGGGGGCAGCGCCAACAATCACTTTCCC
CCGCTACGAAAGAAAACGTTGTCCCGCTAGGTACCGGGGGGGGGAGAGCA
CGAAAAGAGCAGCAGGGGAACGTTTTCTGTGGAAACGCTCCCCCAGCAAC
CCCTGTTTCTTATGCATTGGGGGCATCGCACGATCATGTACTTATTGGGA
CGTTTCTGTTGTGGCCGAGATTGAGCTGTGTTTCTTAGTCCTTTTTTCTT
ACTTTTCGTAAAAAGGTGAGCCTTTTTTTCTCAACAGAATTTTTCTTCAT
TGCGGGCCCGTACTACTGTATTCGGCAAGTCGAATGGAGGGTACACTTCA
TCCTGCTAAGGGGTGGGGGGACTGGATATCATCTTATTTTGTAGTCTTTC
CTCTTCTGAGACGTTTGTTTGGCGCGCAATGGCAACGCCACCCACCACCC
ATACAACAATCACCACCACCAACAACAACGATAAGAAGGTTATCTCCACA
CAACGCAACGTAACACCGTCATCTATCTTTGTGTAGGTCATCAATGACGA
ACGAAAATCTTTGCTTGCTTCCGGCCTTGCTTTCTTCGGGTGGCGCGCAG
GAACGTTGCCGATTGACGTCGGTTAGGCTGGAGGAGATGCTAGCGAGGCG
GGGGGGACGAGAAGAACAGAATAGCCAACCAGAAGAAGAACAAGATGCAT
CTTCTTCTCCACGTCCACCCCAGCTCAATCCGCCGCTGCCAGGGTTGTCG
AAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12449:400..4702-

>mRNA_Ecto-sp13_S_contig12449.2029.1 ID=mRNA_Ecto-sp13_S_contig12449.2029.1|Name=mRNA_Ecto-sp13_S_contig12449.2029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12449:400..4702- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCCTTGTCCGCCACAGCTACACGATGCGCGCCGCGCGTTGATGGGGAG
CGGCAGGAGGAACAACGCCGCGCACCCGAGCTACGAGAGCCTCGACGCCT
TCTTCTGCGGCTGCTTGGAGCGCGTGGAGGCAGCGTACGCCACTCTGAAC
AAGGCCTTCAAGATAAGGGTGGAGTGCTGGATCGCCAAGCTCAACGGCCC
GTACCCACTGCCCAACGTCGCGTGGCGAAAGAACCGTAACGCCTTCGCCG
CTCTCCTCGCCCGTGCCGTGGAAGAGGTCGACTTCAGAGAGCCGTTCAAT
AGGCGCCCCCCAGAGGGGAGTCTGCCCACCCTAGCGCCCCACCTCCGAGC
CCGCATTCCTGACCGAGACCCGTTCCGACGAAGTGGCAGCGACTTCTGGC
TGCGGCATAGAGCTTGGTTGGACACTAGCCGAGGCCTTTCTACGAGAGAT
TTCGCCAACGAGGCCGCCGAAGCGTCGCGCACTTTTCAGCCGACAAGAAG
AGGGTCGCCATCGCTAACGAGCCAGGACCCCCTGCTCGCGTCGCCCGGGC
TGCAGGGGGGAGGGCACGACGCTGCCGGCGACACCACCGTCATCGGCGGT
GGCATCACCAGCGGGATTGCTACTACTGCTGGTGGTTGCTGCGGCGCCAC
CGCGGCGGCCCTTTCGTCGCCCGCGCCGCCACCGCCGCCGAACCCCTCGT
CCTCGAGGATACACAGCGGCGGCGGCAGCGGCAACAATAACGCCGCGCCG
TGCGCCGCCGCCGCTCGAGGTCCCTGCGGCTCCCGCACCACCACGAGCAA
GAGGTGTCCGTGCGACCCTCTTGGAAAGGCGGGGTTCGAGGGGGGGGCAG
GGGGGGCGCCACGCGGGGGAGGAGCCGGCGGCGGAGTGGAGGCAGCGGGA
GAAAGGGTGGGGTGCGGGCATTGCGGGTGTGACGGAGAGAGAGTGCGGGC
CCTCCAGACGATGGTCAGGGAACAAGCCCTCCAGCTCGCCGCTCTTCGCC
TTCGGCAAGCGTACCGGGGGAGGGCCCAGGCGGCAAAGCTGCAGCGTGTA
CGGCACGAACGTTGCCGATTGACGTCGGTTAGGCTGGAGGAGATGCTAGC
GAGGCGGGGGGGACGAGAAGAACAGAATAGCCAACCAGAAGAAGAACAAG
ATGCATCTTCTTCTCCACGTCCACCCCAGCTCAATCCGCCGCTGCCAGGG
TTGTCGAAG
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