prot_Ecto-sp13_S_contig880.20285.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig880.20285.1
Unique Nameprot_Ecto-sp13_S_contig880.20285.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length205
Homology
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BLAST of mRNA_Ecto-sp13_S_contig880.20285.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 2.400e-58
Identity = 152/178 (85.39%), Postives = 154/178 (86.52%), Query Frame = 0 
Query:    1 FVIRRSSPAGDGRITRVVTHRLPVTDDGHGFLQTVDPEALSVLIGKEAVLRATFGTESGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAAXXXXXXXXXXXXXXS-------PSSTTPATRPEL-SXXXXXXXXXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIAPP 170
            FVIRRSSPAGDGRITRVVTHRLPVTDDGHGFLQTVDPEALSVLIGKEAVLRATFGTESGTNQHEVEEARVAVDTVVQE+SSRFRDFRKRQPA XXXXXXXXXXXXXX        P ST P   P L +       XXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIA P
Sbjct:  376 FVIRRSSPAGDGRITRVVTHRLPVTDDGHGFLQTVDPEALSVLIGKEAVLRATFGTESGTNQHEVEEARVAVDTVVQEISSRFRDFRKRQPAXXXXXXXXXXXXXXXXXXXXXXXPVSTRPELSPPLPAALRGRGSXXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIASP 553
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BLAST of mRNA_Ecto-sp13_S_contig880.20285.1 vs. uniprot
Match: A0A6H5L550_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L550_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.790e-27
Identity = 102/129 (79.07%), Postives = 103/129 (79.84%), Query Frame = 0 
Query:   57 ESGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAAXXXXXXXXXXXXXXSPSSTTPATRPELSXXXXXXXXXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIAPPLSSGSRTDPHSPRAA 185
            +SGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPA XXXXXXXXXXXXXX      P TRPE S           XXXXXXXXXXXXXXDVGPPSLADAEGGEAG FSTIA P  SGS TDPHS RAA
Sbjct:    2 QSGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAXXXXXXXXXXXXXXXX---XXPPTRPERSPPLPAALRGSVXXXXXXXXXXXXXXDVGPPSLADAEGGEAGVFSTIASPPLSGSSTDPHSARAA 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig880.20285.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM0_ECTSI2.400e-5885.39Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A6H5L550_9PHAE5.790e-2779.07Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig880contigEcto-sp13_S_contig880:17322..20012 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig880.20285.1mRNA_Ecto-sp13_S_contig880.20285.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig880 17321..20012 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig880.20285.1 ID=prot_Ecto-sp13_S_contig880.20285.1|Name=mRNA_Ecto-sp13_S_contig880.20285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
FVIRRSSPAGDGRITRVVTHRLPVTDDGHGFLQTVDPEALSVLIGKEAVL
RATFGTESGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAAAAAATAT
AHNNNNSSPSSTTPATRPELSPPLPAALRGRGSGGGNGSSGGSSGGDVGP
PSLADAEGGEAGGFSTIAPPLSSGSRTDPHSPRAAAAAAAAVDDSGTSSS
NGGAA
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