mRNA_Ecto-sp13_S_contig880.20285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig880.20285.1
Unique NamemRNA_Ecto-sp13_S_contig880.20285.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig880.20285.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 2.400e-58
Identity = 152/178 (85.39%), Postives = 154/178 (86.52%), Query Frame = 1 
Query:    1 FVIRRSSPAGDGRITRVVTHRLPVTDDGHGFLQTVDPEALSVLIGKEAVLRATFGTESGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAAXXXXXXXXXXXXXXS-------PSSTTPATRPEL-SXXXXXXXXXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIAPP 510
            FVIRRSSPAGDGRITRVVTHRLPVTDDGHGFLQTVDPEALSVLIGKEAVLRATFGTESGTNQHEVEEARVAVDTVVQE+SSRFRDFRKRQPA XXXXXXXXXXXXXX        P ST P   P L +       XXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIA P
Sbjct:  376 FVIRRSSPAGDGRITRVVTHRLPVTDDGHGFLQTVDPEALSVLIGKEAVLRATFGTESGTNQHEVEEARVAVDTVVQEISSRFRDFRKRQPAXXXXXXXXXXXXXXXXXXXXXXXPVSTRPELSPPLPAALRGRGSXXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIASP 553
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BLAST of mRNA_Ecto-sp13_S_contig880.20285.1 vs. uniprot
Match: A0A6H5L550_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L550_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.790e-27
Identity = 102/129 (79.07%), Postives = 103/129 (79.84%), Query Frame = 1 
Query:  169 ESGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAAXXXXXXXXXXXXXXSPSSTTPATRPELSXXXXXXXXXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIAPPLSSGSRTDPHSPRAA 555
            +SGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPA XXXXXXXXXXXXXX      P TRPE S           XXXXXXXXXXXXXXDVGPPSLADAEGGEAG FSTIA P  SGS TDPHS RAA
Sbjct:    2 QSGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAXXXXXXXXXXXXXXXX---XXPPTRPERSPPLPAALRGSVXXXXXXXXXXXXXXDVGPPSLADAEGGEAGVFSTIASPPLSGSSTDPHSARAA 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig880.20285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM0_ECTSI2.400e-5885.39Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A6H5L550_9PHAE5.790e-2779.07Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig880contigEcto-sp13_S_contig880:17321..20012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size616
Hectar predicted targeting categoryother localisation
Exons3
Cds size615
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.1900535-CDS-Ecto-sp13_S_contig880:17321..177671681464153.1900535-CDS-Ecto-sp13_S_contig880:17321..17767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig880 17322..17767 -
1681464153.1991043-CDS-Ecto-sp13_S_contig880:18018..180881681464153.1991043-CDS-Ecto-sp13_S_contig880:18018..18088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig880 18019..18088 -
1681464153.2078793-CDS-Ecto-sp13_S_contig880:19913..200121681464153.2078793-CDS-Ecto-sp13_S_contig880:19913..20012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig880 19914..20012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig880.20285.1prot_Ecto-sp13_S_contig880.20285.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig880 17322..20012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig880.20285.1

>prot_Ecto-sp13_S_contig880.20285.1 ID=prot_Ecto-sp13_S_contig880.20285.1|Name=mRNA_Ecto-sp13_S_contig880.20285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
FVIRRSSPAGDGRITRVVTHRLPVTDDGHGFLQTVDPEALSVLIGKEAVL
RATFGTESGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAAAAAATAT
AHNNNNSSPSSTTPATRPELSPPLPAALRGRGSGGGNGSSGGSSGGDVGP
PSLADAEGGEAGGFSTIAPPLSSGSRTDPHSPRAAAAAAAAVDDSGTSSS
NGGAA
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mRNA from alignment at Ecto-sp13_S_contig880:17321..20012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig880.20285.1 ID=mRNA_Ecto-sp13_S_contig880.20285.1|Name=mRNA_Ecto-sp13_S_contig880.20285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig880:17321..20012- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCATTCGGCGTTCGTCGCCGGCAGGCGACGGGAGGATAACTCGAGT
CGTCACCCACCGCCTGCCGGTCACCGATGATGGCCACGGGTTCCTGCAGG
TGTGAGTGATTGCGATGCGCACACGCTTTTAGAACTACTGTAGCCGTAAA
TGCAGCAATAGCCTTGGCGAGGATATTGAGCTTGTATTCGAAAATGTACA
TGCGTTGAAAGAAACACTATTGTATTCCTTTCCCCTGTCCAGATCATTCA
ATCTTGTGAGCATTGGGTTTGGTTGGGTGAGGCCTCCTGCACCGGCCAGC
TTGTTGATTGTCTCATATGCATGAATATATAGGATTTCGACTTTTTTACT
CTTCGCAGTCGTTTTTCTCCGCTAGGAAAGCCTTTTTTCTCGCACTTTCG
TCTGCATGGCACGCAGAGGACCCGTCGGTACATTATCCGTTACGTGCTGG
GCTCGCGAGACACCGGTGGTGCGCGTTAGGGCCGCCTACAGTCGCTGGGA
CTGGCTCTTTTTACAGGGGTTGGGAATCCGAACCATAAGAGCCTCCTCGA
ACCGCACGGAAACTGAAAACAGAATTTTTTTTACCCCCCGCCCCGCGCCA
CGCGCCCACGCGCCCACACACCTGCTGCTGTGATTGTTGTGCACACAACC
ATCACACGGCAACTGGCGCATGCGTACCCACAGCGGGAATCAAGACTCTT
GATGCTCATGGAAACACAACACGCGACACAGAAGTCCTCTCGCACAACTC
TGGCAACGGTAAATTTGTGCATTTAAGTTCCGAAAAATTGAAAAGGTCAA
ATATACAACTTTCGTAGGGTAGCAGTCTTCATCTATCTGACTGTTCTTGG
GCACGTTGAGCGTCTCTATTCCTTTGTGGTTGGTGTATGCGTGAAAAAGC
CCCACATACCATGGGAAACACGATCGCACAAGAAGAGAAAGTGATCAAAC
GCAGCGGATTACAGCAGTAGGACCTGCAGCAAACCGCTGCCCAAAACTTC
TCACTCGCGCACAAGGGAAATTCACGGCGGGAGAAAACAAAATACCCCGC
ACATATGATGCAAATTCCAGGAAAATTATTAGTATGGAAGTTGCATGCAA
GCCAGCACTACCGAACGTTGTGACGACCAACCATGCGATCGCGATAGCAC
TGATTGGCCATGTCCTCTTGCGTCTCCCCCGGGAGGCAAATCACCTACCT
CCCGCAGGGGAACTTGTACCATGTATATCTTTGACCACACTAGCCCGCCT
CTGCGCCATTAGGTTGCTCACCCAAACTTTCTTGCTTTCAGCGGCGCGCA
CACGGAGAAAAATTGCATGTGAAGTCGGCCGACCAATTTGTAGCCACAGT
CGAAGGGCATGGACTTAGTAAGGCCTACGGGTTTTGGGTTCGGGGGTAGG
GTGAGGGTGAGGGTTAGGGTTACCTCTCTTTTTCAAATATGCAACGCTTA
GTATCCTCGGCGAGGCGGTCCGCAAAGTTAGCCCTAGACTCCGTCCGGGA
TGGTGGTTTTGACTTTTCCCAGCGTAGCGGGGTTCGGTGTTTTCCGTATC
CCGCAAGAGAAAAGAACAAAATAGAGGTACCATTATTGGCGTCGGTTCCG
GGAGTGGAGTCTAGAATGTTCCTTCTGCTGCTCCTACTGGCCTGTTGTTG
CTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTCCT
GTTGCTGTTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTC
TACTGGGTGTTGGTCTTTACGTTCTTGCTAGATCTGCTGCTGTTGTTGCT
GCTGCTGCTGCTGCTGCTGCTTTTGTTGTAGCTGTTGCTGTGATGCCGGC
CTTTGAAATAGCCCCCTCGTGTGCACGCCCCCCCCTCTTATCGCCTTCTC
CTCCTCCTCCTCCTCCTGAACCAGACTGTGGACCCTGAGGCGTTGTCGGT
TCTCATCGGGAAGGAGGCGGTTTTGCGAGCCACGTTCGGGACAGGTGCGT
AGCGGAGCATAACGCTGAGCTCCCCCCCTCTGCCTGACAGGTGCTGTGTT
GTTTTCGGTGCGATTCCGCACGCGTACGACTGCTACCCTGGCATGGCGTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTGTCGCCCCCTCTTCTCGCGTTC
GCACGGGCAACGCAAGTACTGACACTATGGATAGCTTTGGATGCCTTTGC
ATGTAGATGACCGCTACCGTCAACATGAACATGAACACACGACAGAGAGC
GGCACGAACCAGCACGAGGTGGAGGAGGCGCGCGTGGCCGTCGACACCGT
CGTCCAGGAGGTTAGCTCGCGCTTTCGGGACTTCCGGAAGAGGCAGCCCG
CCGCCGCCGCCGCCGCCACCGCCACCGCTCACAACAACAACAACAGCTCG
CCGTCGTCGACAACACCGGCGACGAGACCGGAACTGTCGCCGCCGCTCCC
CGCGGCCTTGAGAGGGAGGGGGTCCGGCGGCGGCAACGGTAGCAGTGGCG
GCAGCAGCGGCGGCGACGTGGGTCCGCCGTCGCTGGCCGACGCAGAGGGG
GGAGAGGCCGGGGGATTCTCGACGATTGCGCCCCCCCTCTCGTCGGGGTC
ACGTACCGACCCACATTCTCCTCGCGCGGCAGCAGCAGCAGCAGCAGCTG
TAGACGACAGCGGCACTAGCAGTAGCAACGGCGGCGCGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig880:17321..20012-

>mRNA_Ecto-sp13_S_contig880.20285.1 ID=mRNA_Ecto-sp13_S_contig880.20285.1|Name=mRNA_Ecto-sp13_S_contig880.20285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig880:17321..20012- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCATTCGGCGTTCGTCGCCGGCAGGCGACGGGAGGATAACTCGAGT
CGTCACCCACCGCCTGCCGGTCACCGATGATGGCCACGGGTTCCTGCAGA
CTGTGGACCCTGAGGCGTTGTCGGTTCTCATCGGGAAGGAGGCGGTTTTG
CGAGCCACGTTCGGGACAGAGAGCGGCACGAACCAGCACGAGGTGGAGGA
GGCGCGCGTGGCCGTCGACACCGTCGTCCAGGAGGTTAGCTCGCGCTTTC
GGGACTTCCGGAAGAGGCAGCCCGCCGCCGCCGCCGCCGCCACCGCCACC
GCTCACAACAACAACAACAGCTCGCCGTCGTCGACAACACCGGCGACGAG
ACCGGAACTGTCGCCGCCGCTCCCCGCGGCCTTGAGAGGGAGGGGGTCCG
GCGGCGGCAACGGTAGCAGTGGCGGCAGCAGCGGCGGCGACGTGGGTCCG
CCGTCGCTGGCCGACGCAGAGGGGGGAGAGGCCGGGGGATTCTCGACGAT
TGCGCCCCCCCTCTCGTCGGGGTCACGTACCGACCCACATTCTCCTCGCG
CGGCAGCAGCAGCAGCAGCAGCTGTAGACGACAGCGGCACTAGCAGTAGC
AACGGCGGCGCGGCG
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