mRNA_Ecto-sp13_S_contig8791.20266.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8791.20266.1
Unique NamemRNA_Ecto-sp13_S_contig8791.20266.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8791.20266.1 vs. uniprot
Match: D7FJL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.740e-26
Identity = 56/81 (69.14%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:   79 SRGGKEGTLHAELCKGMVLAARIAATVFKTPSAKPEALDDFATVSTYTEGDSFDLRPCEFLGVCVNIVADYCNPDGDLQTY 321
            S G +EG+LHA L KGMVLA RIAATV+KTPSA PE+LD FATVS YT GD FDLRP E LG+ V++VADYC P G+  TY
Sbjct: 1181 SEGNQEGSLHAPLFKGMVLATRIAATVYKTPSAGPESLDGFATVSEYTNGDMFDLRPGEPLGIRVDLVADYCEPSGEHVTY 1261
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BLAST of mRNA_Ecto-sp13_S_contig8791.20266.1 vs. uniprot
Match: D7FUD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD8_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.270e-25
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:   94 EGTLHAELCKGMVLAARIAATVFKTPSAKPEALDDFATVSTYTEGDSFDLRPCEFLGVCVNIVADYCNPDGDLQT 318
            EGT +A L KGMVLA RIAA VFK PSA PE +D FATVS YT GD FDLRPCEFLGV   +VA+Y +PDGDLQT
Sbjct: 1229 EGTFNAPLFKGMVLATRIAAMVFKVPSATPEIVDGFATVSNYTTGDMFDLRPCEFLGVRAGLVAEYLDPDGDLQT 1303
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BLAST of mRNA_Ecto-sp13_S_contig8791.20266.1 vs. uniprot
Match: A0A6H5KW95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW95_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 9.770e-24
Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:   79 SRGGKEGTLHAELCKGMVLAARIAATVFKTPSAKPEALDDFATVSTYTEGDSFDLRPCEFLGVCVNIVADYCNPDGDLQTY 321
            S G + G LHA L KGMVLA RIAATV+KTPSA+PE+LD FATVS YT GD FDLRP E LG+ V++VADY  P G   TY
Sbjct:  877 SEGRQAGNLHAPLFKGMVLATRIAATVYKTPSARPESLDGFATVSEYTNGDMFDLRPGEPLGIRVDLVADYYEPSGKHVTY 957
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8791.20266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJL7_ECTSI2.740e-2669.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUD8_ECTSI3.270e-2572.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW95_9PHAE9.770e-2466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8791contigEcto-sp13_S_contig8791:1610..3681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464151.8143017-UTR-Ecto-sp13_S_contig8791:1609..16361681464151.8143017-UTR-Ecto-sp13_S_contig8791:1609..1636Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8791 1610..1636 -
1681464151.8561945-UTR-Ecto-sp13_S_contig8791:3555..36811681464151.8561945-UTR-Ecto-sp13_S_contig8791:3555..3681Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8791 3556..3681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464151.826567-CDS-Ecto-sp13_S_contig8791:1636..16891681464151.826567-CDS-Ecto-sp13_S_contig8791:1636..1689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8791 1637..1689 -
1681464151.8372805-CDS-Ecto-sp13_S_contig8791:2505..26381681464151.8372805-CDS-Ecto-sp13_S_contig8791:2505..2638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8791 2506..2638 -
1681464151.8469875-CDS-Ecto-sp13_S_contig8791:3489..35551681464151.8469875-CDS-Ecto-sp13_S_contig8791:3489..3555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8791 3490..3555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8791.20266.1prot_Ecto-sp13_S_contig8791.20266.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8791 1637..3555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8791.20266.1

>prot_Ecto-sp13_S_contig8791.20266.1 ID=prot_Ecto-sp13_S_contig8791.20266.1|Name=mRNA_Ecto-sp13_S_contig8791.20266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MVLAARIAATVFKTPSAKPEALDDFATVSTYTEGDSFDLRPCEFLGVCVN
IVADYCNPDGDLQTYVGRNRLTRTVELQWASGA*
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mRNA from alignment at Ecto-sp13_S_contig8791:1610..3681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8791.20266.1 ID=mRNA_Ecto-sp13_S_contig8791.20266.1|Name=mRNA_Ecto-sp13_S_contig8791.20266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8791:1610..3681- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCTTGGCTTCAAGACGATCAACATCTCAAACCAGGATCTGGTGGGT
ACCCTTGTACGCCATCTCTCGGAACCATTCGAGGGGAGGAAAGGAAGGCA
CTCTCCACGCAGAGTTGTGCAAGGGCATGGTCCTGGCGGCCAGAATCGCA
GCCACGGTCTTTAAGACGCCGTCAGCCAAGCCCGAGGCCTTGGTGAGTGA
GGAACACGGTCCCGGTTACTTATCGTTTTGATGTTGTCCAGTCGTTGTCT
TTTCGTTTGAGAACATGTCGCAGACCTTGCACTACTGTCACGATGTTTAC
ATTTCCAACCCCCTAGACCCTAAGGTAATTTTGAGCAGGAGCGCCTTGGC
GAGGGGCTGGTTCGTGGTCTCTGGACAACATGTTCCTCACCACGACCGCA
ATGCACGAAGTGTCTTGAGAGCGATGTGGAAAACCCTCGCAAGCGGCAGT
CCAAATCATCTGATTTCAATGCCGACTCGAACAGCTATATCGAAGAGCAA
CAGCACCCACCAGTCTTCGTCTTCGGCCTGTTGCCACAATTCTGAAATAC
CTGCAATGCTCGATCGTTAGATCGCTCTGTATCTCGAACCCCTGGACACA
GGCATAGCGTTTGCCTACCCACTTTCCAACATGGTGGCTGTCTGTTTTTG
TCCGAAACGTACTGCGTACAACCCATTCGGCGATTTTCCAATCGCTGGTC
GATAACGCACAAATCAACCTTGGCGCTCATACACTTTGTCTTTGCTGGCA
CGGACACGCATGCTGTGATGGTTTCCCGAATCATGTCCCCATGAGGGCCG
TGGGTGAACTCCTTTCAAACACAACCCGGAGTCACACCTCGACACTTCTG
TGGGGGGGACTAAGAGGACCCAAGCAACCGAGAGTGCATTGCACTACTGG
AACAGAAGCGCCCTGCCATGTCATCCTTGTACTTCATGCCAATGTCTGGA
GACCGGAGAAGTTGAACAGGTCGAATGCTTGAACACCCGTATTCTCGGAT
CCTTACAACGTACCCTTGTTCGTAAATACCACTCTTTTCCTAGGACGATT
TCGCCACGGTGTCAACCTACACCGAAGGTGACTCGTTCGACCTGAGGCCT
TGCGAATTTCTGGGGGTTTGCGTCAACATTGTGGCTGATTACTGCAACCC
CGACGGCGATCTCCAAACATATGTGGGTGCGTGTCTGTCGAAAGGGTTGA
ATGTACCGTATTCCTTTCGTGTTTCGTACAGTTAGCCCTGCGCCTGACCC
TGTTTTTGGGCCAAATTTCTGTCCAGCGGAGGTTCTTTCGAACAGCCCAT
ATTGCTGAATTTTTATTTTATAGCCAATCAATCCCCGCATTTTTCGCAGC
CACGTCAGTTTGCCAAGCGAAAAGACTGAACATCGGCTGTGGTGTGTCCT
GATTTTGTTTGAGTTGACGACGAAATGGGATTGCTGCAGCCCCCCCGATT
TCCACCCGGCGGTGGGGCTGCAGGGACATTGCATAGAGAGCAGAACAGTC
ACCGCTACTCATGGCGCCGAAACGGTCGCAGAAGCTGCAGTAGCACCGAC
GGCAGAGCCGTTGCGCCCGGGCACAATTTCAGCGATGAATGGAAAAAAAA
CACCGATCGATGGGAAGAGCGGGTAGGGTCTGATTTTTTTCCAACATGGT
ACAAAAAGCAACTGAGCCGCCGCCGCCCTTCCCACCCCTCTGTGGGGTTC
GAGAGACAATGCGAGCAAACTAAGACAATCAGTGCTACTCATGGTGCAGG
AACGGTTTTCCTTTGTTTAGGAATTCGGAGTTGAGCCGTGCCGGCAACCC
AGAAAGGACTGTTTTCAGGTCTTTGGACCAATCAGAGCTCGGCGTTGATG
TTGATTGTTGATTGTTGATTTTCGAACATCGTCAGTGCCGGCCGGGCCTC
GACCACATGGCCAGCGCCACTTGTGTCCATAGTGCTTCCATGGTGACTGA
CGACGTATCCGTTGACGGCCTACATGTACCTAACCCCAACAGGGCGGAAC
AGGCTGACAAGGACCGTCGAACTGCAATGGGCCAGTGGGGCATAGAGGAT
GGTACCGCAGATGGGGGTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8791:1610..3681-

>mRNA_Ecto-sp13_S_contig8791.20266.1 ID=mRNA_Ecto-sp13_S_contig8791.20266.1|Name=mRNA_Ecto-sp13_S_contig8791.20266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8791:1610..3681- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCTGGCGGCCAGAATCGCAGCCACGGTCTTTAAGACGCCGTCAGC
CAAGCCCGAGGCCTTGGACGATTTCGCCACGGTGTCAACCTACACCGAAG
GTGACTCGTTCGACCTGAGGCCTTGCGAATTTCTGGGGGTTTGCGTCAAC
ATTGTGGCTGATTACTGCAACCCCGACGGCGATCTCCAAACATATGTGGG
GCGGAACAGGCTGACAAGGACCGTCGAACTGCAATGGGCCAGTGGGGCAT
AG
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