mRNA_Ecto-sp13_S_contig12440.2026.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12440.2026.1
Unique NamemRNA_Ecto-sp13_S_contig12440.2026.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12440.2026.1 vs. uniprot
Match: D7G6P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P9_ECTSI)

HSP 1 Score: 519 bits (1336), Expect = 5.480e-184
Identity = 262/320 (81.88%), Postives = 279/320 (87.19%), Query Frame = 1
Query:    1 MGLGGQSALHALHKAAGFPGEMTVYAKIRERSMKFVMCASLEKECLVAATTAKLEHFSRLYDGEKRVVIPAIDEIATEPRARYYGLTDEVLGLCVQHTPAKSIKFVDLDNLEDLSSRLNEGHSHIGSKHTVISACALGDIPHHAIPVAAFASCKAPNPDQQQLVFETVRKCTVVSIVELRGKLCLQFIKLLITRKVEASRGLRFLWNDRFAAAIGPIVLVASDGDGVRRRFLYKFTSCVTSEMFAEFDLLDAKTSIHGVIQGFDLKHNGKRLRMREISKKGVKISAGALPLTCDSLPELFRWYDGKPKEMYRTLLNPDDR 960
            M LGGQ+ALHALHKAAGFPG  TVYAKIRERSMKFV+CASLEK+CLVAA TA LE FSRLYDGE+RVVI  IDEIATEPRARYYGLTDE+LGLCVQHTP KS KF DLDNLEDLS RLNEGHSHIGS+HTVISACALGD PHHAIPV AFASCKA NP QQQLVFETVR C +VS+VE+ GKLCLQ I L+ITRKVEASRG+  +WNDRFA  I PIVLVASDGDGVRRR LY FTS VTSE FAEFDLLDA TS +GV+Q FDLKHN KRLR R+ISK+GVKISA ALPL CDS P+LFRWYD KP E YRTLLNPDDR
Sbjct:    1 MRLGGQTALHALHKAAGFPGASTVYAKIRERSMKFVVCASLEKDCLVAAITANLERFSRLYDGERRVVILEIDEIATEPRARYYGLTDEILGLCVQHTPPKSTKF-DLDNLEDLSGRLNEGHSHIGSEHTVISACALGDTPHHAIPVVAFASCKARNPGQQQLVFETVRHCIIVSLVEVPGKLCLQLIWLMITRKVEASRGILEVWNDRFAPTIDPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDAMTSEYGVVQCFDLKHNLKRLRTRDISKRGVKISASALPLNCDSFPQLFRWYDCKPNETYRTLLNPDDR 319          
BLAST of mRNA_Ecto-sp13_S_contig12440.2026.1 vs. uniprot
Match: D7FQM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM1_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.390e-99
Identity = 164/321 (51.09%), Postives = 202/321 (62.93%), Query Frame = 1
Query:    1 MGLGGQSALHALHKAAGFPGEMTVYAKIRERSMKFVMCASLEKECLVAATTAKLEHFSRLYDGEKRVVIPAIDEIATEPRARYYGLTDEVLGLCVQHTPAKSIKFVDLDNLEDLSSRLNEGHSHIGSKHTVISACALGDIPHHAIPVAAFASCKAPNPDQQQLVFETVRKCTVVSIVELRGKLCLQFIKLLITRKVEASRGLRFLWNDR--FAAAIGPIVLVASDGDGVRRRFLYKFTSCVTSEMFAEFDLLDAKTSIHGVIQGFDLKHNGKRLRMREISKKGVKISAGALPLTCDSLPELFRWYDGKPKEMYRTLLNPDD 957
            M LGGQS LHALHKAAGFPG  TVYAKIRERSMKF +CAS + ECL AA TA LE F  LY GEKRV+I  +DE+ATE RARY    D ++GLCVQ TP K+ KF  + ++E+++  L++G  HIG +HTVIS  ALGD P+HA+P+ AFA C  PNP QQQL   T+                                    +WN    F   +GPIVLV SDGD VRR+ L+  TS  TS++   F L+D  TS+ G++Q FDLKH  KR R ++ISKKGV++S G L L  D+ PELFR +DG P+  Y  L NPDD
Sbjct:    1 MRLGGQSLLHALHKAAGFPGATTVYAKIRERSMKFALCASADVECLTAAITANLERFVSLYKGEKRVIILQMDELATEQRARYDQEGDNIVGLCVQCTPRKNTKFGGVSSVEEIAGMLDKGECHIGHQHTVISGAALGDRPYHAVPLLAFAVCNEPNPLQQQLALRTILD----------------------------------VWNSNPAFGNTLGPIVLVCSDGDAVRRKVLHDLTSGGTSDVLNVFKLMDKTTSVEGLMQCFDLKHCAKRYRTKDISKKGVRVSGG-LALNRDTYPELFRVHDGNPEATYDALFNPDD 286          
BLAST of mRNA_Ecto-sp13_S_contig12440.2026.1 vs. uniprot
Match: D7G0J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J3_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 3.820e-66
Identity = 123/226 (54.42%), Postives = 139/226 (61.50%), Query Frame = 1
Query:  280 CVQHTPAKSIKFVDLDNLEDLSSRLNEGHSHIGSKHTVISACALGDI-PHHAIPVAAFASCKAPNPDQQQLVFETVRKCTVVSIVELRGKLCLQFIKLLITRKVEASRGLRFLWNDRFAAAIGPIVLVASDGDGVRRRFLYKFTSCVTSEMFAEFDLLDAKTSIHGVIQGFDLKHNGKRLRMREISKKGVKISAGALPLTCDSLPELFRWYDGKPKEMYRTLLNPD 954
            C   TP   ++   L  L+   +    G   +G+ +T  S  AL +   HHAIPV A ASCKA NP QQQ+VFET+                                    +WNDRFA  IGPIVLVASDGDGVRRR LY FTS VTSE FAEFDLLDA TS HGV+Q FDLKHN KRLR R+ISK+GVKI AGALPL CDS P+LF+WYD KP E YRTLLNPD
Sbjct:   32 CACSTPLPRVRSSTLTTLKTFPAGSTRGTRTVGA-NTPSSPLALFEKNSHHAIPVVASASCKARNPGQQQVVFETILG----------------------------------VWNDRFAPTIGPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSFPQLFQWYDCKPNETYRTLLNPD 222          
BLAST of mRNA_Ecto-sp13_S_contig12440.2026.1 vs. uniprot
Match: UPI0004622351 (uncharacterized protein n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI0004622351)

HSP 1 Score: 63.9 bits (154), Expect = 1.550e-7
Identity = 66/257 (25.68%), Postives = 104/257 (40.47%), Query Frame = 1
Query:  214 IDEIATEPRARYYGLTDEVLGLCVQHTPAKSIKFVDLDNLEDLSSRLNEG--HSHIGSKHTVISACALGDIPHHAIPVAAFASCKAPNPDQQQLVFETVRKCTVVSIVELRGKLCLQFIKLLITRKVEASRGLRFLWNDRFAAAIGPIVLVASDGDGVRRR--FLYKFTSCVTSEMFAEFDL-----LDAKTSIHGVIQGFDLKHNGKRLRMREISKKGVKISAGALPLTCDSLPELFRWYDGKPKEMYRTLLNPDD 957
            +D IA E RA Y  +T+EV+GLC +H+ A  +  + LD ++ +++ LN+     H+G + TV +        +HA+P+    SCKA   ++                         ++I+  +    E+  G          A  GPI  VA+DGDG  RR  F     + ++ E     DL     L+  T    V    D KH  KR      S +G+ +    +    DSL        G        L++P D
Sbjct:   44 MDGIAVEQRASYSRVTNEVVGLCREHSGALDLHVISLDAIKHVAAALNDEVPTCHLGKECTVAALAPYRAKNYHAVPILVSPSCKAEKAEEMA-----------------------EWIRRFLKWWKESPDG---------EARHGPIWCVATDGDGTFRRAKFALLMLATLSPESPLYLDLVRLEGLNLWTGEDEVTASADFKHVFKRFATLLRSSEGILVQDTII--NQDSLARHLVKLPGLNAYKVANLIDPSD 266          
BLAST of mRNA_Ecto-sp13_S_contig12440.2026.1 vs. uniprot
Match: A0A4Q2CYW0_9AGAR (Uncharacterized protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2CYW0_9AGAR)

HSP 1 Score: 57.0 bits (136), Expect = 2.580e-5
Identity = 74/306 (24.18%), Postives = 126/306 (41.18%), Query Frame = 1
Query:    7 LGGQSALHALHKAA-GFPGEMTVYAKIRERSMKFVM--------CASLEKECLVAATTAKLEHFSRLYDGEKRV-VIPAIDEIATEPRARYYGLTDEVLGLCVQHTPAK--SIKFVD-LDNLEDLSSRLNEGHSHIGSKHTVISACALGDIPHHAIPVAAFASCKAPNPDQQQLVFETVRKCTVVSIVELRGKLCLQFIKLLITRKVEASRGLRFLWNDRFAAAI-GPIVLVASDGDGVRRRFLYKFTSCVTSEMFAEFDL---------LDAKTSIHGVIQGFDLKHNGKRLRMREISKKGVKIS 855
            LGG  ALHALHK+   FP   TV    ++  ++  +        C ++E   +   +TA            +RV V   +DEIAT+ +  Y   TDE  GLC +H   +  S+K  D L+ +  +++ +  G  HIG +  V +      I + A PV  F +CK+       ++ E +R+   +S                                  +  A+ GP+  +ASDGD   R  LY    C++ E+  +  L         ++  T  +      D KH+ KR+     +++G+ ++
Sbjct:   28 LGGDGALHALHKSPFAFPCRQTVVKHRQDFRLRITVGDIKISDICHNIE--VMFKDSTAPTH---------RRVGVTLMMDEIATDGQMCYLSDTDECGGLC-EHAAERFSSMKLGDDLEVIRAIAAAVCAGEVHIGQEVFVAAFARNDSIDYSAKPVLVFPTCKSGTAQTSAVIIEKLRQAWQIS---------------------------------PYGEALHGPLWSIASDGDPKCRPALY--LQCMSQELKPDNPLFKHLGDLREMNLMTGPNLETHNLDYKHSFKRICKLLCTREGILVN 286          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12440.2026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G6P9_ECTSI5.480e-18481.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQM1_ECTSI1.390e-9951.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0J3_ECTSI3.820e-6654.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00046223511.550e-725.68uncharacterized protein n=1 Tax=Trametes versicolo... [more]
A0A4Q2CYW0_9AGAR2.580e-524.18Uncharacterized protein n=1 Tax=Candolleomyces abe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12440contigEcto-sp13_S_contig12440:1171..2604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score82.4
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog2880.D7G3X4
Model size960
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2DMFT@1,2S64X@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_000100.1
Cds size960
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.546715-CDS-Ecto-sp13_S_contig12440:1170..15171681462662.546715-CDS-Ecto-sp13_S_contig12440:1170..1517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12440 1171..1517 -
1681462662.5585682-CDS-Ecto-sp13_S_contig12440:1599..19451681462662.5585682-CDS-Ecto-sp13_S_contig12440:1599..1945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12440 1600..1945 -
1681462662.567601-CDS-Ecto-sp13_S_contig12440:2151..23221681462662.567601-CDS-Ecto-sp13_S_contig12440:2151..2322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12440 2152..2322 -
1681462662.5757575-CDS-Ecto-sp13_S_contig12440:2508..26041681462662.5757575-CDS-Ecto-sp13_S_contig12440:2508..2604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12440 2509..2604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12440.2026.1prot_Ecto-sp13_S_contig12440.2026.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12440 1171..2604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12440.2026.1

>prot_Ecto-sp13_S_contig12440.2026.1 ID=prot_Ecto-sp13_S_contig12440.2026.1|Name=mRNA_Ecto-sp13_S_contig12440.2026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp
MGLGGQSALHALHKAAGFPGEMTVYAKIRERSMKFVMCASLEKECLVAAT
TAKLEHFSRLYDGEKRVVIPAIDEIATEPRARYYGLTDEVLGLCVQHTPA
KSIKFVDLDNLEDLSSRLNEGHSHIGSKHTVISACALGDIPHHAIPVAAF
ASCKAPNPDQQQLVFETVRKCTVVSIVELRGKLCLQFIKLLITRKVEASR
GLRFLWNDRFAAAIGPIVLVASDGDGVRRRFLYKFTSCVTSEMFAEFDLL
DAKTSIHGVIQGFDLKHNGKRLRMREISKKGVKISAGALPLTCDSLPELF
RWYDGKPKEMYRTLLNPDDR
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mRNA from alignment at Ecto-sp13_S_contig12440:1171..2604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12440.2026.1 ID=mRNA_Ecto-sp13_S_contig12440.2026.1|Name=mRNA_Ecto-sp13_S_contig12440.2026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12440:1171..2604- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCTAGGGGGGCAATCGGCACTGCATGCGTTGCACAAAGCAGCAGG GTTCCCGGGGGAAATGACGGTGTACGCGAAGATCCGGGAGCGTTCGGTGA GCAACAGGGAGTTGGAACATTAAGGATCACCACAAGAACAAGCAGCAGCC ATTTTAGCCGTTTGCACACGTTGATTTGCAGTGCGACAAGCTCGGTATTT TGTGGTCGGTTTCTTTTCACTCCCTCTGCTCTTGCTGACGCCGTAATTCT GCAACATTCTGTGTTCATTCTCGTCGTTGCAGATGAAGTTTGTCATGTGC GCTTCGCTTGAGAAGGAGTGCCTGGTTGCGGCAACCACGGCGAAGCTGGA GCACTTTTCGCGGCTATACGATGGCGAGAAGAGAGTGGTCATTCCGGCGA TCGACGAGATTGCCACGGAGCCGCGTGCAAGATACTACGGTCTTACGGAT GAGGTGCGTACTGGGAGCTTCGTCTTTGTGGCGCAGGCGCTTTGTAGGTT CTAAAAGTCGGGAGGCGTGTCTCGCGTAGCCATTGCCCACCGTTTGCACT GGAAGTCTGGATGTGTTTCGTGGTGCCCGAGCAAGTGCTTCCATCAGCCA CATTTTGATTCGTGTCCCACACCACAAACGGTGATATCCCTCAATATCTT TGAAATCAGGTATTGGGCCTGTGCGTGCAGCACACCCCTGCCAAGAGTAT CAAGTTCGTCGACCTTGACAACCTCGAAGACCTTTCCAGCCGACTCAACG AGGGGCACTCGCACATTGGCAGCAAACACACCGTCATTTCCGCTTGTGCT CTCGGAGATATTCCTCACCACGCCATACCAGTCGCGGCGTTCGCCAGCTG CAAGGCGCCTAACCCAGACCAGCAGCAACTCGTCTTCGAAACGGTAAGAA AGTGTACCGTTGTTTCCATTGTTGAGCTACGCGGGAAACTATGCCTCCAG TTTATAAAGTTGCTGATAACGCGGAAGGTCGAGGCATCCCGAGGGTTGAG GTTCTGTCCATGACGCGCCCCCTCTCTACTCCAGATATCTACCAAGCATG TTTTGCCGGCCTCGAACGTTGACGCAGATACTGGAAGTGTGGAACGATCG ATTCGCTGCTGCCATCGGCCCCATCGTGCTCGTGGCTTCGGATGGGGACG GCGTGAGGCGCCGGTTTCTCTACAAATTCACCAGCTGTGTCACGTCCGAG ATGTTCGCTGAGTTCGACCTCCTCGACGCCAAGACTAGCATACACGGCGT GATACAGGGCTTCGATCTGAAGCACAACGGAAAGCGGCTTCGCATGAGGG AAATTTCGAAGAAAGGGGTGAAGATATCGGCGGGCGCACTTCCGCTTACC TGCGACAGCTTGCCAGAGCTCTTTCGGTGGTACGACGGCAAACCGAAGGA GATGTATAGGACCTTGCTCAACCCGGACGACAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12440:1171..2604-

>mRNA_Ecto-sp13_S_contig12440.2026.1 ID=mRNA_Ecto-sp13_S_contig12440.2026.1|Name=mRNA_Ecto-sp13_S_contig12440.2026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12440:1171..2604- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCTAGGGGGGCAATCGGCACTGCATGCGTTGCACAAAGCAGCAGG
GTTCCCGGGGGAAATGACGGTGTACGCGAAGATCCGGGAGCGTTCGATGA
AGTTTGTCATGTGCGCTTCGCTTGAGAAGGAGTGCCTGGTTGCGGCAACC
ACGGCGAAGCTGGAGCACTTTTCGCGGCTATACGATGGCGAGAAGAGAGT
GGTCATTCCGGCGATCGACGAGATTGCCACGGAGCCGCGTGCAAGATACT
ACGGTCTTACGGATGAGGTATTGGGCCTGTGCGTGCAGCACACCCCTGCC
AAGAGTATCAAGTTCGTCGACCTTGACAACCTCGAAGACCTTTCCAGCCG
ACTCAACGAGGGGCACTCGCACATTGGCAGCAAACACACCGTCATTTCCG
CTTGTGCTCTCGGAGATATTCCTCACCACGCCATACCAGTCGCGGCGTTC
GCCAGCTGCAAGGCGCCTAACCCAGACCAGCAGCAACTCGTCTTCGAAAC
GGTAAGAAAGTGTACCGTTGTTTCCATTGTTGAGCTACGCGGGAAACTAT
GCCTCCAGTTTATAAAGTTGCTGATAACGCGGAAGGTCGAGGCATCCCGA
GGGTTGAGGTTCTTGTGGAACGATCGATTCGCTGCTGCCATCGGCCCCAT
CGTGCTCGTGGCTTCGGATGGGGACGGCGTGAGGCGCCGGTTTCTCTACA
AATTCACCAGCTGTGTCACGTCCGAGATGTTCGCTGAGTTCGACCTCCTC
GACGCCAAGACTAGCATACACGGCGTGATACAGGGCTTCGATCTGAAGCA
CAACGGAAAGCGGCTTCGCATGAGGGAAATTTCGAAGAAAGGGGTGAAGA
TATCGGCGGGCGCACTTCCGCTTACCTGCGACAGCTTGCCAGAGCTCTTT
CGGTGGTACGACGGCAAACCGAAGGAGATGTATAGGACCTTGCTCAACCC
GGACGACAGA
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