prot_Ecto-sp13_S_contig8783.20256.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8783.20256.1
Unique Nameprot_Ecto-sp13_S_contig8783.20256.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length340
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8783.20256.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 1.620e-153
Identity = 309/339 (91.15%), Postives = 321/339 (94.69%), Query Frame = 0 
Query:    1 MSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHRVSGVADLTTPENNSENGNPRAPSRSATAPPAXXXXXXXXXXXXXXXXXXXXXXMHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPFSTAKKGAGKNVVDTSSIATAATSAADILDSGSPVDLSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSDNNAPKERGKKRGLATSTGGARATKRRASAGDALPTAKKRGGVGGRGKGAKAKGKKAKTARRRKSTGGLAAISXXXXXXXXXXXXXXEDWA 339
            MSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHRVS VADLTTPEN+S+NGNPRAPSRSATAPPAXXXXXXXXXXXXXXXXXXXXXX HLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPF+TAKKGAGK+VVDTSSIA AATSAA++L+SGSPV+LSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSD+N PK+RGKKRGLA+STGGA         GDAL TAKKRGGV GRGKG + KGKKAKTARRRKSTGGLAAIS XXXXXXXXXXXXXEDWA
Sbjct: 1903 MSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHRVSVVADLTTPENSSQNGNPRAPSRSATAPPAXXXXXXXXXXXXXXXXXXXXXXXHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPFTTAKKGAGKSVVDTSSIAAAATSAAEVLNSGSPVELSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSDSNVPKKRGKKRGLASSTGGAXXXXXXXXXGDALSTAKKRGGVAGRGKGVRTKGKKAKTARRRKSTGGLAAISDXXXXXXXXXXXXXEDWA 2241
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BLAST of mRNA_Ecto-sp13_S_contig8783.20256.1 vs. uniprot
Match: A0A6H5JQE5_9PHAE (Sister chromatid cohesion protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE5_9PHAE)

HSP 1 Score: 419 bits (1076), Expect = 1.210e-136
Identity = 256/339 (75.52%), Postives = 264/339 (77.88%), Query Frame = 0 
Query:    1 MSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHRVSGVADLTTPENNSENGNPRAPSRSATAPPAXXXXXXXXXXXXXXXXXXXXXXMHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPFSTAKKGAGKNVVDTSSIATAATSAADILDSGSPVDLSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSDNNAPKERGKKRGLATSTGGARATKRRASAGDALPTAKKRGGVGGRGKGAKAKGKKAKTARRRKSTGGLAAISXXXXXXXXXXXXXXEDWA 339
            MSLQGSQCLELLHTLLARKGVPTPPPDSDDI+EDDLGLHAARERQEGGHRVSGVADLTTPE+NSENGNPRA SRSATAPPA                      MHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPF+TAKKGAGKNVVDTSSIA AA SAA++LDSGSPV+LSAFYMELRRLAQDDPEDYAGWEGL+EAVSDGQDG                                        SAGDAL TAKKRGGVGGRGKG KAKGKK KTARRRKSTGG A +S     XXXXXXXXXEDWA
Sbjct:  552 MSLQGSQCLELLHTLLARKGVPTPPPDSDDIEEDDLGLHAARERQEGGHRVSGVADLTTPEHNSENGNPRALSRSATAPPAVGGDGASSAAGMGAANAEEENMMHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPFTTAKKGAGKNVVDTSSIAAAAASAAEVLDSGSPVELSAFYMELRRLAQDDPEDYAGWEGLQEAVSDGQDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGDALSTAKKRGGVGGRGKGVKAKGKKPKTARRRKSTGGFAGVSDSSGRXXXXXXXXXEDWA 890
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8783.20256.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSV8_ECTSI1.620e-15391.15Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JQE5_9PHAE1.210e-13675.52Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8783contigEcto-sp13_S_contig8783:33..3625 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8783.20256.1mRNA_Ecto-sp13_S_contig8783.20256.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8783 30..5641 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8783.20256.1 ID=prot_Ecto-sp13_S_contig8783.20256.1|Name=mRNA_Ecto-sp13_S_contig8783.20256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp
MSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHR
VSGVADLTTPENNSENGNPRAPSRSATAPPAVGGGGSSSAAGMGAANAEE
ESMMHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANE
KQAQSPNPPPETFNPFSTAKKGAGKNVVDTSSIATAATSAADILDSGSPV
DLSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSDN
NAPKERGKKRGLATSTGGARATKRRASAGDALPTAKKRGGVGGRGKGAKA
KGKKAKTARRRKSTGGLAAISDSSERDDDDDEDDDEDWA*
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