mRNA_Ecto-sp13_S_contig8780.20254.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8780.20254.1
Unique NamemRNA_Ecto-sp13_S_contig8780.20254.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8780.20254.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI)

HSP 1 Score: 396 bits (1018), Expect = 1.250e-123
Identity = 202/253 (79.84%), Postives = 204/253 (80.63%), Query Frame = 1 
Query:    1 ARQRLVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLYLVYLVVFTLCSVLNSGRNMPHGYHLTMSIRSAIEIGSGLWDEEESLFGTTDSAASIWEWLQGPVVDLVYADTNNSWYEGDTLVNSQGWNAVSILGQPRLSQWRTASDSCETWPLILAEDELSSNSSKFCFTDYCGEDSGATALCHAASMDARPFGPNFKYEYVPDAHKDKIKGSFGVYGPGAFVHYIPTEDRGLAESGMEELE 759
            ARQRLVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLYLVYLVVFTLCSVLNSGRNMPHGYHLT+                                                WYEGDTLVNSQGWNAVSILGQPRLSQWRTASDSCETWPLILAE+ELSSNSSKFCFTDYCGEDSGATALCHAASMDARPFGPNFKYEYVPDAHKDKIKGSFGVYGPGAFVHYIPT DRGLAESGMEELE
Sbjct:  486 ARQRLVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLYLVYLVVFTLCSVLNSGRNMPHGYHLTI------------------------------------------------WYEGDTLVNSQGWNAVSILGQPRLSQWRTASDSCETWPLILAEEELSSNSSKFCFTDYCGEDSGATALCHAASMDARPFGPNFKYEYVPDAHKDKIKGSFGVYGPGAFVHYIPTVDRGLAESGMEELE 690
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BLAST of mRNA_Ecto-sp13_S_contig8780.20254.1 vs. uniprot
Match: A0A6H5KCS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCS6_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 6.960e-59
Identity = 121/279 (43.37%), Postives = 128/279 (45.88%), Query Frame = 1 
Query:  373 SWYEGDTLVNSQGWNAVSILGQPRLSQWRTASDSCE--------------------------------------------TWPLILAEDELSSNSSKFCFTDYCGEDSGATALCHAASMDARPFGPNFK----------------------------------------------------------------------------------------------------------YEYVPDAHKDKIKGSFGVYGPGAFVHYIPTEDRGLAESGMEELE 759
            +WYEGDTLV SQGWNA+SILGQPRLSQWRTASDSCE                                            TWPLILAE+ELSSNSSKFCF+DYCGEDSGATALCHAASMDARPFGP+FK                                                                                                          Y+YVPDAHKD+IKGSFGVYGPGAFVHYIPTEDRGLAESGMEELE
Sbjct:   30 AWYEGDTLVTSQGWNALSILGQPRLSQWRTASDSCEVPSVRRVFNVLLLPVVDVCDKRHHHHLPTPQPLTPSSLGCTDHQTWPLILAEEELSSNSSKFCFSDYCGEDSGATALCHAASMDARPFGPDFKVARSRTATVDRLRALCHRSRRWPVEVEVEGQICRHRCSFRASRPGTIAVDRLRARSREVRAKSEGAPRMSGIECEGTFSTVCESRKHLYPPSHQAIMVPTPTPTHRYKYVPDAHKDRIKGSFGVYGPGAFVHYIPTEDRGLAESGMEELE 308
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8780.20254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMJ3_ECTSI1.250e-12379.84Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KCS6_9PHAE6.960e-5943.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8780contigEcto-sp13_S_contig8780:529..2817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score398.7
Seed ortholog evalue2.1e-108
Seed eggNOG ortholog2880.D8LMJ3
Model size762
KEGG rclassRC00002,RC00017
KEGG koko:K00901,ko:K21413,ko:K21952
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005488,GO:0005515
Exons6
EggNOG free text desc.Ankyrin repeat and sterile alpha motif
EggNOG OGsCOG0666@1,KOG0507@2759,KOG3599@1,KOG3599@2759
EC2.7.1.107
Cds size759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8780.20254.1prot_Ecto-sp13_S_contig8780.20254.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8780 530..2817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464150.5112653-CDS-Ecto-sp13_S_contig8780:529..6621681464150.5112653-CDS-Ecto-sp13_S_contig8780:529..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8780 530..662 -
1681464150.5236273-CDS-Ecto-sp13_S_contig8780:981..11271681464150.5236273-CDS-Ecto-sp13_S_contig8780:981..1127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8780 982..1127 -
1681464150.5339406-CDS-Ecto-sp13_S_contig8780:1259..13651681464150.5339406-CDS-Ecto-sp13_S_contig8780:1259..1365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8780 1260..1365 -
1681464150.5555534-CDS-Ecto-sp13_S_contig8780:1681..18251681464150.5555534-CDS-Ecto-sp13_S_contig8780:1681..1825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8780 1682..1825 -
1681464150.5709972-CDS-Ecto-sp13_S_contig8780:2250..23961681464150.5709972-CDS-Ecto-sp13_S_contig8780:2250..2396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8780 2251..2396 -
1681464150.580199-CDS-Ecto-sp13_S_contig8780:2733..28171681464150.580199-CDS-Ecto-sp13_S_contig8780:2733..2817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8780 2734..2817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8780.20254.1

>prot_Ecto-sp13_S_contig8780.20254.1 ID=prot_Ecto-sp13_S_contig8780.20254.1|Name=mRNA_Ecto-sp13_S_contig8780.20254.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
ARQRLVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLY
LVYLVVFTLCSVLNSGRNMPHGYHLTMSIRSAIEIGSGLWDEEESLFGTT
DSAASIWEWLQGPVVDLVYADTNNSWYEGDTLVNSQGWNAVSILGQPRLS
QWRTASDSCETWPLILAEDELSSNSSKFCFTDYCGEDSGATALCHAASMD
ARPFGPNFKYEYVPDAHKDKIKGSFGVYGPGAFVHYIPTEDRGLAESGME
ELE
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mRNA from alignment at Ecto-sp13_S_contig8780:529..2817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8780.20254.1 ID=mRNA_Ecto-sp13_S_contig8780.20254.1|Name=mRNA_Ecto-sp13_S_contig8780.20254.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2289bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8780:529..2817- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGGCAACGGTTGGTTTACCAGCAGAGCAAGCAACGATACCATGCCGG
AAGGAGCATTTTTTCTTCAGCCCGTGTTCAGGAGGTACGTGCTGCCGTAT
GTGCCTCCGCTCTTCTGTAGATTATTCACCAATTTCTAGACTACTCATCA
GCGTTTCGTCCAATTTCGCACTTGGTCCTGCTAAAAATGTTTGCTCATGG
GTGTTCTGGGGGGAAGGAAGTGCTGAACCTTTCTTATGCTAAAAATGGAG
GCGTGCGCTGCAGAACAACGTTCGCGTGTTGCCTGAATCAGGGTCCGAAG
AAACGACAATAATTGCGACATCACATAGTAGTAAATCAGAATGTTGTCGT
TTTCTGGGGCGGTGGCCCGAATGGTCTAGGTAAGGCCGACCCCATGCCTG
CCCCCTTTCTCCTGTCTACAGGCTGTCCACGAGGAATGGATCCAGGGAGG
CCACCGCATTCGGGCACTTCGGGTGCTGCTCCTGTACCTCGTCTACCTTG
TCGTTTTCACGCTGTGTTCGGTGCTAAACTCCGGGAGAAACATGCCTCAC
GGCTACCACCTGACCATGTAAGAAAGGGAGAGTTTGTTCCTGGATTGTTC
CCCAAGGTTCTCCACACTAGGCTGGGATGTGTATGATCGAGGCCTTCAGC
ATGGCCATGAATGAAGTGCAACATGGGTAATTTTCTGAGTAGATATCGCC
CGGGGCAGCTGACAAATCTGTCATGGCTCAGCTGTTGCCCGTGCTTGTAT
GTCAGCGGAACCCAACCCCTTTCAACTGACAGTAGTCGATGATATTTTTC
TTCTTGTAGCCTGGTAAGCGAAGCAGGGCCTCAGAATGGCTTCTTATTGA
AATCACAGCATCACATAGAGCTAACATGATCATCGGTAGAAGCAACTTCA
ACAATCCAGGAAACCCTTGCCGACTTTGACCTAGAAAGAGATTGGACAGT
GTTGAGGTGTGACAAGCGTTGTTTTCCAACGACCATTCCCAGGTCGATTC
GATCGGCGATCGAAATCGGGTCTGGCCTGTGGGACGAGGAAGAATCCCTC
TTCGGTACGACGGACTCCGCGGCCAGCATCTGGGAATGGTTGCAAGGTCC
TGTCGTTGACCTCGTCTACGCGGATACCAACAACAGGTGTTCGACAAGAA
AACTCGTTGGAGCACCTTTGCCATTGGCTCAAGGAACTGGATCACGTTGC
TCCCAGGGCACACATAAAGAACAAACCAACTTGCGGTCGTGGCACTATCT
TTGAGCGAATGATACAGAGAATACACAAAACGATCCAAGATGCCGAAGCA
CGACCGTACTATCCACGCTTTCGCCCCAATCGGGCATTGAAAACTGCGTG
GAATATCCGCGGCATATACGACTCTCCCGCATTGATTGGCAGTCGCTACG
CTGACAGAATCAAATGATGCCCGCCGTCCACATTTCTTCGGATTTCTTGC
AGTTGGTACGAAGGAGACACCTTGGTGAATTCCCAAGGATGGAACGCCGT
GAGCATACTGGGACAACCAAGGCTCAGTCAGTGGCGAACGGCGTCCGATT
CTTGCGAGGTGCCGAGTTTGTGGCGTGCTTTGAACGTGTTGCTATTACCC
GTCGTTGACGTTTGTGACAAGCGCCATCACCGTCATTTACCAACCCCGCA
ACCCTTGACTCCCTCCTCCTTTGGTTGCACGGACCATCAGACCTGGCCAC
TCATCTTGGCCGAAGACGAACTAAGCAGCAACAGCAGCAAGTTTTGCTTC
ACTGATTACTGCGGTGAAGACTCAGGGGCAACGGCACTCTGTCACGCAGC
TTCCATGGATGCCAGACCCTTCGGCCCAAATTTCAAGTGAGGTGTCGCCC
CTTGTCCGTTTGTAGCATGGACACGGCACGCCCCGGGCCCGATCACGTGA
AGTAAGGGCTAAATCGGAAGTACTTGAAGGAAGCGAGGACCAAGTCAGCT
GAAGTCGTTTGGCAAAAGCAAACGTGCGGTGCACACGTGAGAACCCGACT
CCTGCTGCGACGAACAGCGTGAAACACGAATAGGGTGCCCCAAGGATGTC
GGGAATCGATTGTGAAGGTACTTTTTCTGCGGTATGCGAGAAGCACCACC
TCTATCCCCCCAGCCATCAAGCAATCATGATACCTACACCCACACCCACC
CACAGGTACGAGTACGTTCCCGATGCTCACAAGGACAAGATAAAGGGGTC
CTTTGGAGTGTACGGGCCGGGCGCATTCGTGCACTACATCCCGACTGAGG
ACCGAGGTTTAGCTGAGTCAGGCATGGAAGAACTCGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8780:529..2817-

>mRNA_Ecto-sp13_S_contig8780.20254.1 ID=mRNA_Ecto-sp13_S_contig8780.20254.1|Name=mRNA_Ecto-sp13_S_contig8780.20254.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8780:529..2817- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGGCAACGGTTGGTTTACCAGCAGAGCAAGCAACGATACCATGCCGG
AAGGAGCATTTTTTCTTCAGCCCGTGTTCAGGAGGCTGTCCACGAGGAAT
GGATCCAGGGAGGCCACCGCATTCGGGCACTTCGGGTGCTGCTCCTGTAC
CTCGTCTACCTTGTCGTTTTCACGCTGTGTTCGGTGCTAAACTCCGGGAG
AAACATGCCTCACGGCTACCACCTGACCATGTCGATTCGATCGGCGATCG
AAATCGGGTCTGGCCTGTGGGACGAGGAAGAATCCCTCTTCGGTACGACG
GACTCCGCGGCCAGCATCTGGGAATGGTTGCAAGGTCCTGTCGTTGACCT
CGTCTACGCGGATACCAACAACAGTTGGTACGAAGGAGACACCTTGGTGA
ATTCCCAAGGATGGAACGCCGTGAGCATACTGGGACAACCAAGGCTCAGT
CAGTGGCGAACGGCGTCCGATTCTTGCGAGACCTGGCCACTCATCTTGGC
CGAAGACGAACTAAGCAGCAACAGCAGCAAGTTTTGCTTCACTGATTACT
GCGGTGAAGACTCAGGGGCAACGGCACTCTGTCACGCAGCTTCCATGGAT
GCCAGACCCTTCGGCCCAAATTTCAAGTACGAGTACGTTCCCGATGCTCA
CAAGGACAAGATAAAGGGGTCCTTTGGAGTGTACGGGCCGGGCGCATTCG
TGCACTACATCCCGACTGAGGACCGAGGTTTAGCTGAGTCAGGCATGGAA
GAACTCGAA
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