prot_Ecto-sp13_S_contig8780.20254.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8780.20254.1
Unique Nameprot_Ecto-sp13_S_contig8780.20254.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length253
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8780.20254.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI)

HSP 1 Score: 396 bits (1018), Expect = 1.250e-123
Identity = 202/253 (79.84%), Postives = 204/253 (80.63%), Query Frame = 0 
Query:    1 ARQRLVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLYLVYLVVFTLCSVLNSGRNMPHGYHLTMSIRSAIEIGSGLWDEEESLFGTTDSAASIWEWLQGPVVDLVYADTNNSWYEGDTLVNSQGWNAVSILGQPRLSQWRTASDSCETWPLILAEDELSSNSSKFCFTDYCGEDSGATALCHAASMDARPFGPNFKYEYVPDAHKDKIKGSFGVYGPGAFVHYIPTEDRGLAESGMEELE 253
            ARQRLVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLYLVYLVVFTLCSVLNSGRNMPHGYHLT+                                                WYEGDTLVNSQGWNAVSILGQPRLSQWRTASDSCETWPLILAE+ELSSNSSKFCFTDYCGEDSGATALCHAASMDARPFGPNFKYEYVPDAHKDKIKGSFGVYGPGAFVHYIPT DRGLAESGMEELE
Sbjct:  486 ARQRLVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLYLVYLVVFTLCSVLNSGRNMPHGYHLTI------------------------------------------------WYEGDTLVNSQGWNAVSILGQPRLSQWRTASDSCETWPLILAEEELSSNSSKFCFTDYCGEDSGATALCHAASMDARPFGPNFKYEYVPDAHKDKIKGSFGVYGPGAFVHYIPTVDRGLAESGMEELE 690
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BLAST of mRNA_Ecto-sp13_S_contig8780.20254.1 vs. uniprot
Match: A0A6H5KCS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCS6_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 6.960e-59
Identity = 121/279 (43.37%), Postives = 128/279 (45.88%), Query Frame = 0 
Query:  125 SWYEGDTLVNSQGWNAVSILGQPRLSQWRTASDSCE--------------------------------------------TWPLILAEDELSSNSSKFCFTDYCGEDSGATALCHAASMDARPFGPNFK----------------------------------------------------------------------------------------------------------YEYVPDAHKDKIKGSFGVYGPGAFVHYIPTEDRGLAESGMEELE 253
            +WYEGDTLV SQGWNA+SILGQPRLSQWRTASDSCE                                            TWPLILAE+ELSSNSSKFCF+DYCGEDSGATALCHAASMDARPFGP+FK                                                                                                          Y+YVPDAHKD+IKGSFGVYGPGAFVHYIPTEDRGLAESGMEELE
Sbjct:   30 AWYEGDTLVTSQGWNALSILGQPRLSQWRTASDSCEVPSVRRVFNVLLLPVVDVCDKRHHHHLPTPQPLTPSSLGCTDHQTWPLILAEEELSSNSSKFCFSDYCGEDSGATALCHAASMDARPFGPDFKVARSRTATVDRLRALCHRSRRWPVEVEVEGQICRHRCSFRASRPGTIAVDRLRARSREVRAKSEGAPRMSGIECEGTFSTVCESRKHLYPPSHQAIMVPTPTPTHRYKYVPDAHKDRIKGSFGVYGPGAFVHYIPTEDRGLAESGMEELE 308
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8780.20254.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMJ3_ECTSI1.250e-12379.84Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KCS6_9PHAE6.960e-5943.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013122Polycystin cation channel, PKD1/PKD2PFAMPF08016PKD_channelcoord: 97..164
e-value: 1.1E-5
score: 24.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..64
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 65..253
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..45
NoneNo IPR availableTMHMMTMhelixcoord: 46..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8780contigEcto-sp13_S_contig8780:530..2817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8780.20254.1mRNA_Ecto-sp13_S_contig8780.20254.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8780 529..2817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8780.20254.1 ID=prot_Ecto-sp13_S_contig8780.20254.1|Name=mRNA_Ecto-sp13_S_contig8780.20254.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
ARQRLVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLY
LVYLVVFTLCSVLNSGRNMPHGYHLTMSIRSAIEIGSGLWDEEESLFGTT
DSAASIWEWLQGPVVDLVYADTNNSWYEGDTLVNSQGWNAVSILGQPRLS
QWRTASDSCETWPLILAEDELSSNSSKFCFTDYCGEDSGATALCHAASMD
ARPFGPNFKYEYVPDAHKDKIKGSFGVYGPGAFVHYIPTEDRGLAESGME
ELE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013122PKD1_2_channel