mRNA_Ecto-sp13_S_contig1244.2025.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1244.2025.1
Unique NamemRNA_Ecto-sp13_S_contig1244.2025.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI)

HSP 1 Score: 905 bits (2340), Expect = 0.000e+0
Identity = 455/487 (93.43%), Postives = 464/487 (95.28%), Query Frame = 2 
Query:    2 LVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWARLDAGRYKLRQEGEGFVPITATYGWHTFDGTLQRLFFVLTMGLVAVTLNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETIAPGKRGKLRESLLALGTIAACLLALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRRCEEGKFVSGETEHECPTAMPGQEHGQNWRHAWQHVAKARNFRIRHEHGSEHFHVAPLLQSTTGLDMKRLCSLAKKKYSDRRQKEPGDAPGEEENGMGFEGLDDLGLDPAGGSASRTQMDEAPGGSGSSTFLSPDFETKVAEFLSTVTTRMREHISATENDWGEHNYAPITPSPPDMRQQQGREWVHNGIQVPSFGGGGVRTDRDGTAVFSRGGGEERGRMAKVDVESTESIISGDGSTSNTSDTDLPETVVLPPVCALGSPQRRMHLLGSMEGSSRRTT 1462
            LVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWW RLDAGR KLRQEGEGFVPITATYGWHTFDGTLQRLFFVLTMGLVAV LNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEET AP KRGKLRESLLALGTIAAC LALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRR EEGKFVSGET+ ECPTAMPGQEHGQNWRHAWQHVAKARN RIRHEHGSEHFHVAPLLQSTTGLDMKRLCSLAKKKYSDRRQKEPGDAPGEE NGMGFEGLDDLGLDPAGGS SR QMDEAP GSG+STFLSPDFETKVAEFLSTVTT MRE+ +ATENDWGE  YAP +PSPPDMRQQQGREWVHNGI+VPS GGGGVRTDRDGTAVF RGGGEE+GR A+VD ESTESII+ DGSTSNTSDTDLPETVVLPPVCALGSPQRRMHLLGSMEGSSRRTT
Sbjct:  109 LVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWVRLDAGRCKLRQEGEGFVPITATYGWHTFDGTLQRLFFVLTMGLVAVALNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETNAPVKRGKLRESLLALGTIAACWLALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRRSEEGKFVSGETDQECPTAMPGQEHGQNWRHAWQHVAKARNLRIRHEHGSEHFHVAPLLQSTTGLDMKRLCSLAKKKYSDRRQKEPGDAPGEEGNGMGFEGLDDLGLDPAGGSVSRIQMDEAPRGSGTSTFLSPDFETKVAEFLSTVTTGMRENTAATENDWGEQKYAPTSPSPPDMRQQQGREWVHNGIEVPSLGGGGVRTDRDGTAVFPRGGGEEQGRTARVDDESTESIITDDGSTSNTSDTDLPETVVLPPVCALGSPQRRMHLLGSMEGSSRRTT 595
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BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 427 bits (1097), Expect = 1.670e-124
Identity = 224/329 (68.09%), Postives = 251/329 (76.29%), Query Frame = 2 
Query:    2 LVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWARLDAGRYKLRQEGEGFVPITATYGWHTFDGTLQRLFFVLTMGLVAVTLNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETIAP---GKRGKLRESLLALGTIAACLLALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRRCEEGKFVSGETEH-ECPTAMPGQEHGQNWRHAWQHVAKARNFRIRHEHGSEHFHVAPLLQSTTGLDMKRLCSLAKKKYSDRRQKEPGDAPGEEENGMGFEGLDDLGLDPAGGSASRTQ 976
            L+AVL+TAHGEV ANGEKEFHLARTRLILQSARAVAHRRIPPP NLVQL+VG LLD V ELAWWA   A R  LRQ  E F PIT TYGWHTFDG LQRL F  TMGLVAVTLN+LLWVLSLPWVAWR+VCWV Y+    GD DE E  ++     K+GK R  L     I AC+ AL FA ALCG C+ GSF LW RGV NV+EW  WR  EEG+FVSGET+   CPTAMPGQE G NWRHAW++VAKARNFRIRHEH SEHFHVAPLLQ+TTGLDM++ C LAK+K++D+ Q+   D+P   +  +G  GLDDL LD  GGS SRTQ
Sbjct: 1282 LIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGVSELAWWAVRGADRCGLRQHKESFAPITYTYGWHTFDGMLQRLLFASTMGLVAVTLNALLWVLSLPWVAWRIVCWVLYKVVETGDPDEVETFLSVRLRDKKGKFRAFLWVFLGIIACVFALGFAVALCGVCVAGSFVLWLRGVCNVFEWAHWRLSEEGRFVSGETKKGTCPTAMPGQERGSNWRHAWKYVAKARNFRIRHEHDSEHFHVAPLLQATTGLDMEQFCLLAKEKFNDKNQEHWADSPSAGKC-VGGGGLDDLELDAGGGSVSRTQ 1609
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BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Match: A0A6H5JA22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA22_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 6.010e-41
Identity = 86/141 (60.99%), Postives = 96/141 (68.09%), Query Frame = 2 
Query: 1073 MREHISATENDWGEHNYAPITPSPPDMRQQQGREWVHNGIQVPSFGGGGVRTDRDGTAVFSRGGGEERGRMAKVDVESTESIISGDGSTSNTSDTDLPETVVLPPVCALGSPQRRMHLLGSMEGSSRRTTA*HISMCRPRC 1495
            MRE+ +ATEND GE  +AP TP+  D+ QQQ R W H GIQVP FGG  V TDRDGTAVF RGGG E+G     D E TES ISGDG  S   D+DLPE + LPPVC  GSPQR M+LLGSM+GSSR T   H SM    C
Sbjct:    1 MRENTAATENDGGEEKFAPTTPTSHDLGQQQDRGWTHKGIQVPYFGGEEVSTDRDGTAVFPRGGGAEKGSTDSPDNEPTESSISGDGGKS---DSDLPEILELPPVCERGSPQRGMNLLGSMDGSSRGTAIRHTSMPHHTC 138
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BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 4.070e-38
Identity = 114/313 (36.42%), Postives = 157/313 (50.16%), Query Frame = 2 
Query:    2 LVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWARLDAGRYKLRQEGEGFVPITATYGWHTFDGTLQRLFFVLTMGLVAVTLNSLLWVLSLPWVAW---RLVCWVSYE---------------FANEGDDDEDEETIAPGKR--------GKLRESLLALGTIAACLLALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRRCEEGKFVSGETEHECPTAMPGQEHGQNWRHAWQHVAKARNFRIRHEHGSEHFHVAPLLQSTTGLDMKRLCSLAKKKYSD 862
            L+AVL+T HG+V AN EKEFH AR RLI QSAR V+  R PPPLNL++L+ G+LLD  G   W  R+     + R +     P + T+ W T +G LQRL F  T G+ AV L+++LW++S+PWVAW   RLV     E                  E DD                    G  R  L  + ++ + L+A++ A+ LC   I  +  LW  G+                    +   + P  MPGQE G +W+ AW+ +A  RN   R   G  HFH+APLL+S TGLDM+ L  L K ++ +
Sbjct: 1297 LIAVLSTTHGKVYANAEKEFHHARARLIYQSARVVSRSRPPPPLNLIKLVCGILLDA-GTEVW--RVGVWVTRGRSQARMLKPFSTTHQWKTLEGGLQRLEFAFTFGVAAVGLSTILWIVSVPWVAWCLHRLVHKAEEETXXXXXXXXXXXXXXXXXERDDGXXXXXXXXXXXXXKEKPHLGYFRRFLSGIKSMCSLLVAMVAASFLCLLYIFATMILWAVGIXXX--------XXXXXXXXDKKNGDMPEPMPGQEDGHHWKRAWE-LASLRNQGARANRGQAHFHIAPLLKSKTGLDMQHLAQLTKNRHDE 1597
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BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.760e-37
Identity = 120/345 (34.78%), Postives = 162/345 (46.96%), Query Frame = 2 
Query:    2 LVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELA----WWAR--------------------LDAGRYKLRQEGEG------------------------FVPITATYGWHTFDGTLQRLFFVLTMGLVAVTLNSLLWVLSLPWVAW---RLVCWVSYEFANE------------GDDDEDEETIAPGKRGKLRESLLALGTIAACLLALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRRCEEGKFVSGETEHECPTAMPGQEHGQNWRHAWQHVAKARNFRIRHEHGSEHFHVAPLLQSTTGLDMKRLCSLAK 847
            L+AVL+TAH +V  NG+KEFHLAR +LI QSAR V  RR PPPLNLV++++G L+D   E      W  R                       G      EGE                         F+  T T+ W TF+G +QR+ F  T G  A+ ++++LW LS+PWVAW   RL   V  + A              GD +E+EE       G  R   +     A  ++A   AA LC   I+ S  LWF G+  +++WVR     E         ++ P AMPGQE G +W+ AW  V+  RN  +R +    HF+V P L+S TGLD + L  L K
Sbjct: 1362 LIAVLSTAHSKVYDNGDKEFHLARAKLIYQSARVVTRRRPPPPLNLVKVVLGTLIDATTEPVRFRRWMVRNPPEDENEANPADGAXXXXXXXXGHENDAVEGEAEGDQGNIGGGSPGDCPIAGTPGDEFIAWTQTHEWRTFEGGVQRVLFAFTFGAAAIVMSAILWTLSVPWVAWCLLRLAHPVVEKRAENLEDEEDDTNQGLGDIEEEEEMKEKVHPGYFRRIFITFLWSAVLVVATAVAAILCALYILFSVVLWFVGLHMIYKWVRTNWTPES--------NDRPRAMPGQEEGDHWQRAWDLVS-LRNHGVREDFDQAHFNVLPFLKSKTGLDRQHLAWLTK 1697
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BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Match: A0A6H5K4M1_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.030e-25
Identity = 99/282 (35.11%), Postives = 135/282 (47.87%), Query Frame = 2 
Query:    2 LVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWARLDAGRYKLRQEGEGFVPITATYGWHTFDGTLQRLFFVLTMGLVAVTLNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETIAPGKRGKLRESLLALGTIAACLLALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRRCEEGKFVSGETEHECPTAMPGQEHGQNWRHAWQHVAKARNFRIRHEHGSEHFHVAPLLQSTTGLDMKRLCSLAK 847
            L+AVL+T HG+V  N EKEFH AR   I QSAR V+  R PPPLNL++L+ G+LLD  G + W  R  A   + R + +   P + ++   T +G LQRL F  T G+ AV L+++LW++S+PWV   L C V    A E       +TI  G R     S+ +L      L+A++ A+ LC   +  +  LW  G+W +  W                        P +                   R R      HF VAPLL+S TGLDMK L  L K
Sbjct:  618 LIAVLSTTHGKVYDNAEKEFHHARACFIYQSARVVSRSRPPPPLNLIKLVCGILLDA-GTMLW--RAGAWFRRGRSQAKMLKPFSTSHQRKTLEGGLQRLEFAFTFGVAAVGLSAILWIVSVPWVDSCLHCLVHK--AGEAASWL-LQTIFSGIR-----SMFSL------LIAMVAASFLCVLYVFATMILWAVGIWMIVTWG------------------LGACQPAES------------------RARANRAQAHFRVAPLLKSKTGLDMKHLAQLTK 846
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BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Match: D8LH98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH98_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.880e-19
Identity = 71/224 (31.70%), Postives = 107/224 (47.77%), Query Frame = 2 
Query:  248 PITATYGWHTFDGTLQRLFFVLTMGLVAVTLNSLLWVLSLPWVAWRLV-------------------------CWVSYEFANEGDDDEDEETIAPGKRGKLRESLLALGTIAACLLALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRRCEEGKFVSGETEHECPTAMPGQEHGQNWRHAWQHVAKARNFRIRHEHGSEHFHVAPLLQSTTGLDMKRLCSLA 844
            P +    W   +G LQRL F  TMG  ++ + ++LW+ S+PWVAW  +                         CW   +  N   ++E+  +      G +RE L  +  +   ++++ FAA  C   IVGS  LW  G + +  W  W  C      S + + + P AMPGQE G +W +AW+ +A  RN  IR +    HF+V P L+S TGLDM+ L  +A
Sbjct:  245 PFSKRPQWIAVEGFLQRLAFAFTMGGASLVVFTMLWIFSVPWVAWCFLRSLLPPEDGEEGFHLDTIKMIKTCSCWKGGKGVNIRSEEENNSSP-----GYVRELLWVVCALVVMMVSMAFAAVFCLLYIVGSGILWILGTFRLLVWG-WNNC------SRKRDDKNPEAMPGQEDGSHWENAWK-LANLRNHGIREDREHPHFYVVPFLKSKTGLDMQHLARMA 455
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BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.480e-13
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:    2 LVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAW----WAR 199
            L+AVL+TAH EV  N EKEFHLAR RL++QSAR+VAHRR PPPLNLV+L  G+L+D   E+ W    WAR
Sbjct: 1163 LIAVLSTAHDEVYVNAEKEFHLARARLVVQSARSVAHRRPPPPLNLVKLGFGVLIDVFTEI-WRFILWAR 1231
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BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.070e-11
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:    2 LVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAW----WAR 199
            L+AVL+TAH EV  N EKEFHLAR RL++QSA++VAH R PPPLNL++L  G+L+D   E+ W    WAR
Sbjct:  531 LIAVLSTAHDEVYVNAEKEFHLARARLVVQSAQSVAHLRPPPPLNLIKLGFGVLIDLFTEI-WRFILWAR 599
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1244.2025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FNX2_ECTSI0.000e+093.43Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JB40_9PHAE1.670e-12468.09Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JA22_9PHAE6.010e-4160.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH99_ECTSI4.070e-3836.42Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LHA0_ECTSI1.760e-3734.78Transient Receptor Potential Channel. Partial sequ... [more]
A0A6H5K4M1_9PHAE2.030e-2535.11Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH98_ECTSI2.880e-1931.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH97_ECTSI3.480e-1364.29Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JTT3_9PHAE1.070e-1160.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1244contigEcto-sp13_S_contig1244:13300..18247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score90.9
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D8LHA0
Model size3176
Hectar predicted targeting categorysignal anchor
Exons5
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Cds size1152
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1244.2025.1prot_Ecto-sp13_S_contig1244.2025.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1244 15008..16865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.4574738-UTR-Ecto-sp13_S_contig1244:13299..150071681462662.4574738-UTR-Ecto-sp13_S_contig1244:13299..15007Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1244 13300..15007 -
1681462662.4990585-UTR-Ecto-sp13_S_contig1244:16865..169681681462662.4990585-UTR-Ecto-sp13_S_contig1244:16865..16968Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1244 16866..16968 -
1681462662.5086405-UTR-Ecto-sp13_S_contig1244:17892..180711681462662.5086405-UTR-Ecto-sp13_S_contig1244:17892..18071Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1244 17893..18071 -
1681462662.5170648-UTR-Ecto-sp13_S_contig1244:18213..182471681462662.5170648-UTR-Ecto-sp13_S_contig1244:18213..18247Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1244 18214..18247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.4669495-CDS-Ecto-sp13_S_contig1244:15007..154991681462662.4669495-CDS-Ecto-sp13_S_contig1244:15007..15499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1244 15008..15499 -
1681462662.4766364-CDS-Ecto-sp13_S_contig1244:15757..163241681462662.4766364-CDS-Ecto-sp13_S_contig1244:15757..16324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1244 15758..16324 -
1681462662.486905-CDS-Ecto-sp13_S_contig1244:16772..168651681462662.486905-CDS-Ecto-sp13_S_contig1244:16772..16865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1244 16773..16865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1244.2025.1

>prot_Ecto-sp13_S_contig1244.2025.1 ID=prot_Ecto-sp13_S_contig1244.2025.1|Name=mRNA_Ecto-sp13_S_contig1244.2025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=384bp
MGLVAVTLNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETIAPGKR
GKLRESLLALGTIAACLLALLFAAALCGACIVGSFFLWFRGVWNVWEWVR
WRRCEEGKFVSGETEHECPTAMPGQEHGQNWRHAWQHVAKARNFRIRHEH
GSEHFHVAPLLQSTTGLDMKRLCSLAKKKYSDRRQKEPGDAPGEEENGMG
FEGLDDLGLDPAGGSASRTQMDEAPGGSGSSTFLSPDFETKVAEFLSTVT
TRMREHISATENDWGEHNYAPITPSPPDMRQQQGREWVHNGIQVPSFGGG
GVRTDRDGTAVFSRGGGEERGRMAKVDVESTESIISGDGSTSNTSDTDLP
ETVVLPPVCALGSPQRRMHLLGSMEGSSRRTTA*
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mRNA from alignment at Ecto-sp13_S_contig1244:13300..18247-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1244.2025.1 ID=mRNA_Ecto-sp13_S_contig1244.2025.1|Name=mRNA_Ecto-sp13_S_contig1244.2025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1244:13300..18247- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCGTTGCGGTGCTCACCACGGCTCACGGAGAGGTGAGAAAGGGCTCTA
GCAAGCACGTTCCAACCGAAGGTCTAAGCGCACGCTCGTCATGCCCTCTG
TAATATTTTAACGCGGTTCAAGGCGTAGGTGATATGGAGCTACCTACCAA
GCTTTCCTTGGCCAATTGATTTTCAGGTGAACGCTAACGGGGAAAAGGAG
TTCCACCTCGCACGGACGAGGTTGATCCTACAAAGTGCGCGTGCGGTTGC
GCACCGACGTATTCCGCCGCCGCTGAATCTAGTCCAGCTGATTGTGGGTT
TGCTATTGGATACGGTCGGCGAGCTAGCTTGGTGGGCGAGGCTTGACGCG
GGCAGGTGAGTGGCCGAGAGCGGATTCAAAGCGAGGGAAAAATGATTGAG
ATTTGAACCTATGGAAACCGTAAATTGCAATGTTCATACTGATCCTGAAA
GCGCAGCATCCACCAGCTGTGAGGGGTTTGCAGAAGGGTAATAGACAAAA
GTAGGTATACCCACCCCTTTCTGAGACAAAAGTGGGTGCTCGAAATTTTG
CTTTGCGGAGACCGCTCGTGACAGGGCACAACCAATAACAATATGATTCC
GATCCATGGAAAACATGGGCAGAGTATGTAGATAAACTTTTTCCGACTTT
TTTGGCACGTCTTCACCTACACACAGCCGCAGCGCACAAGGTCTCAACAC
GTTGCACGATTTTGTCCGAAATTCCGGTGGATATCTACTATTTTTTCATT
TACCTACCTTTGTCTGCTTTGTTACCCGCTTTTGTCCGAAATATACTCAC
CTTTGTCCGATTTTCATTGAAAACCGACCTCCACCTCACTTCACCGGGGA
ACTTTTTGAATAAAAATATGTGACAAAGGTGAGTACATTTCGGACAGAGG
TGGGTCACAAAGCAGACAAAGGTGGGTATATTAGAAGATTACTTGATTCC
GGTGGATATACCCGCCGGAATTTTGGACAAAGTCAGGCAATCTGTTGAGG
CCTTGTGCGCTGCGGCTGTGGGTAGGGTGAGGACGTGCCCTAAAGTCGAA
AAAAGTTGATCTTCATGCTGTGAATCGGAACGATATTTTAGGCGGTTGTA
CCCTGTCTCGAGCGGCCTCAGCAAAGAAAAATTCGAGAACCCACTTTTAT
CTGAGAAGAGGGTGGGTATACCCACATTTGACTGTTTCCATTTGTAGAAC
GTTTGCAAAGACGATTGCACTAGGGCTGATAACAAATGTATTTTCGTTAT
TCTCTTTCACGACATCTGCCGGTGTTCAGGTATAAACTGCGCCAGGAAGG
CGAGGGCTTTGTGCCGATCACTGCCACGTACGGCTGGCACACGTTCGACG
GAACGCTGCAAAGACTTTTTTTCGTGTTGACGATGGGTTTGGTCGCAGTG
ACGCTGAACTCGTTGCTCTGGGTGCTGTCGCTTCCGTGGGTGGCGTGGAG
ACTTGTTTGCTGGGTGTCGTACGAGGTGAGAGATATTAGAGTCTCCTTAG
GGCGACCTTTGCCTCCCGCGGTACGACGAACCCTCGCTCCCATTCTCTAG
GGAAACTTAACACCGAATTGCAGTTCGGTCGTACCCAAAACCTGTGGTGG
TTCCGTCATGCAACAGCCCGCGAGAGAGAATCATTGGCTGATGCGCTTTC
TCTGCACCATGGCATTTCAGTGGAGGTTTGATTGGATGTGTAATGGCTGG
ACCTTTGGAGGTCCCAAATTCCTTCAAACGTCCGACACGGGAGGTGTCTC
TGGAGAAAAATGATAATACGTCCATCGGAAGAGCATGTTTGGCAATCACG
CGCAGTGTGAAACATGTTTGGCAATCACGCGCAGTCTTAAACATGACTCG
CCCCCCACCCCATATTTGCCACGGCCATTACCATGAAATTACTCCTAAAT
GGTGGGTTGTCTTGACGTCACAGTTCGCCAATGAAGGCGATGACGATGAG
GACGAGGAAACCATCGCACCGGGCAAGAGAGGGAAACTCAGAGAGTCTCT
CTTGGCCTTGGGTACCATCGCAGCCTGCCTGCTCGCGCTCCTCTTCGCTG
CGGCGCTGTGTGGGGCTTGCATCGTCGGGTCTTTCTTTCTTTGGTTTCGC
GGTGTGTGGAATGTGTGGGAGTGGGTACGCTGGAGACGCTGCGAAGAAGG
GAAATTCGTTTCAGGCGAGACCGAGCACGAGTGCCCCACGGCAATGCCCG
GGCAGGAGCACGGTCAGAACTGGCGGCATGCCTGGCAGCACGTGGCCAAA
GCCCGAAATTTCCGGATCCGGCATGAGCACGGCTCGGAGCACTTTCATGT
CGCTCCATTACTGCAGTCTACGACCGGGCTCGATATGAAGCGCTTGTGCT
CTCTCGCCAAGAAAAAATACAGTGATCGGCGGCAGAAGGAGCCGGGGGAC
GCGCCAGGAGAAGAAGAAAATGGTATGGGGTTTGAAGGCCTGGACGATCT
GGGCCTCGATCCAGCCGGCGGAAGTGCTTCCCGTACCCAGGTGAGTGCAT
TTCGCGTGACAGCTGTAAGGTGTCTGAGCTTACTTTTGATAATAGTGTTT
CATTGAAGCACGCTGTAGCTGGACTGGCGACGCTCTGGGCATGGAGCCAA
CGTTGACTGGAACTCCAAGAGAGAAGTCCGCCCAGGAACCAGCCGTAGAG
ATTTCTCGGGGGAATATAGTGGCTAGTGCGTGTGTGTGTTCGGTTCGGGT
ACCCGTACGCATCTGACACAATAATCTTGTGCGCCATCGCCCCCTCAGAT
GGATGAAGCACCAGGCGGTTCCGGTTCGAGTACGTTTCTCTCGCCCGACT
TCGAGACCAAGGTGGCCGAATTCCTGTCAACGGTTACGACCCGGATGAGG
GAACATATCTCAGCAACTGAGAATGATTGGGGCGAACATAATTATGCTCC
TATCACCCCGTCGCCTCCCGATATGCGGCAGCAACAGGGAAGGGAATGGG
TTCATAACGGAATCCAAGTGCCATCTTTTGGCGGCGGCGGAGTTCGTACA
GACCGAGATGGAACAGCGGTTTTTTCACGCGGTGGTGGGGAGGAGAGGGG
GCGAATGGCTAAGGTAGATGTTGAATCAACGGAAAGCATCATCAGCGGAG
ATGGCAGTACGTCCAATACGTCTGATACTGACCTACCAGAAACCGTGGTG
CTCCCTCCGGTTTGTGCCTTGGGTAGCCCACAGAGAAGGATGCATTTGCT
AGGATCGATGGAGGGGAGCTCTCGAAGGACGACGGCATGACATATATCAA
TGTGCCGCCCCCGATGTGTGACAGATACTAGATATCAATGGTTAGTGTTT
GCAAGGTTTATTGGACGGTTGCCATTGCTCGGATGGTCCCGCCCTATTTT
CCTAGAGGTTTTAGACGTGCGATGTTTGTGTTTTGGTACACCTCTGTGCT
TTCGAGGAAGGTTGCCGTGCGGCAGCTTCAAGGAGTGATGCGTTCATACT
TCTAGTATGAGCGAAAAATGGTGAATGCCGTTAGTTCTGTCCAGGCACGA
TTCCTGTGCCTGCCATTGTTTCAACCGTCGTCCAAGTTTGAGCCTGATCT
CCGCCAAAATGGCTAGCCCTGTAAAAATATGGAGAGTCGTCCAGCTTCAG
GTGCCGGTTGACACGAACATTCCCTTGGTTTGAGTTCGCACGGCGGCAAG
TGCCGCCATTTGTGCAATGGGTTACGTTGGTTGCATTTTCGTTTTGGCGT
GAGTACGGTCCCAATCTAGTTGGCATCCTACAACCTTCTATTGACCGGGA
CAAGGTTATGGGTTCGAAGCCCGGCGTAAGCGAGATTTTTGTTGTGAAAG
TAGTTCACCTCGGGCTTCCGTTCCTGGGAAATATGTATTGAAGAACTCTT
GTTCGTGGGTGAGTAGGTACACTTTGAAGGAAGAGAGTGCTGCACTCTGT
GTCGCGAAAAATCATCGAAAACAAGAACCAGCAGGAGGGATGGGTAGTGG
CCTCAGGGAGAGGTACCCTGCCGTGCGACCATGGATTGGAGCTCCTACCC
GGCAGGAATGCTGTGAGCGCTGATTTGAATGTATGTAAAAATCAGCGACA
GCAGAAGCGCGAGTGTTCGGTAAACGATGTGATGTAAGCCTGTCTCTCTC
TCTTGAGTACTCGAAGACCGGAATGCGCCCGGCCGCATATTTTAACTCGG
TCCAATGTGATGTCAACGGCCAAGTCGTGATAGAAACACCCCTGGCCGCA
AAATGCCGAATATAGAAGACATGGATTATCGCTACGGTCGGATGTGTGCT
TCAGGTTGACTCGATTTGAGTTCGCCAAAGCATCATATGAGGGCTGTCGC
GCGCGTCGCTTGTTGTCGCGCTCGTGGGCTCTTGTCGAGAGTCACTTGCG
CAGCAGAAGAGTGGCTCAAGCCCTTTACAAATGTTCCGGAGTACAATGGG
TGCGGGACGTGGGGCGACAAGGGCAGAACCGTTCGCTTTTGTTTACTTAG
TTGTGAGCATTTCTAAGCAGACACATTGGAATAAGCATTGAGAAATGGCT
GGGTTGGGGTTGGGTTAGGGCTCTATAACATTGGGTTAGGGTTTGCGTGC
ACCCTGCCTGGTCTCTTTGCGTGTTGTTGTCATCACCTTTGGTCGTTCAT
CCAGATCGTCCAGACTTTGCAGCCAGCACAGCGATACACTGACGGCTGCT
GCTGCTGCTGTACAGGCTGAGCGCATGCACCAACAAGCGGTAGTAGTGTT
GATCAACATGTTTCTTTTCGGGGAGTGCGCGCTCTCGCCTTCTTGCCTGT
GGTGGGTGGTCGTGTTGGTCAATCCATTCTGATTGAAAATCTGAATTTGA
ATCATAATGTAGCGTATGCATGTTGTACAAGTATTGAAATATTTTATGAC
AACCTCAGCAGCAGCATATAGTCTAAGCGCTGTATAAGCGAATTTTAAAT
TTTCGTGGGATATCAAGGGATTTGGATATTTCAACACGGATATTTTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1244:13300..18247-

>mRNA_Ecto-sp13_S_contig1244.2025.1 ID=mRNA_Ecto-sp13_S_contig1244.2025.1|Name=mRNA_Ecto-sp13_S_contig1244.2025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1152bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1244:13300..18247- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTTGGTCGCAGTGACGCTGAACTCGTTGCTCTGGGTGCTGTCGCT
TCCGTGGGTGGCGTGGAGACTTGTTTGCTGGGTGTCGTACGAGTTCGCCA
ATGAAGGCGATGACGATGAGGACGAGGAAACCATCGCACCGGGCAAGAGA
GGGAAACTCAGAGAGTCTCTCTTGGCCTTGGGTACCATCGCAGCCTGCCT
GCTCGCGCTCCTCTTCGCTGCGGCGCTGTGTGGGGCTTGCATCGTCGGGT
CTTTCTTTCTTTGGTTTCGCGGTGTGTGGAATGTGTGGGAGTGGGTACGC
TGGAGACGCTGCGAAGAAGGGAAATTCGTTTCAGGCGAGACCGAGCACGA
GTGCCCCACGGCAATGCCCGGGCAGGAGCACGGTCAGAACTGGCGGCATG
CCTGGCAGCACGTGGCCAAAGCCCGAAATTTCCGGATCCGGCATGAGCAC
GGCTCGGAGCACTTTCATGTCGCTCCATTACTGCAGTCTACGACCGGGCT
CGATATGAAGCGCTTGTGCTCTCTCGCCAAGAAAAAATACAGTGATCGGC
GGCAGAAGGAGCCGGGGGACGCGCCAGGAGAAGAAGAAAATGGTATGGGG
TTTGAAGGCCTGGACGATCTGGGCCTCGATCCAGCCGGCGGAAGTGCTTC
CCGTACCCAGATGGATGAAGCACCAGGCGGTTCCGGTTCGAGTACGTTTC
TCTCGCCCGACTTCGAGACCAAGGTGGCCGAATTCCTGTCAACGGTTACG
ACCCGGATGAGGGAACATATCTCAGCAACTGAGAATGATTGGGGCGAACA
TAATTATGCTCCTATCACCCCGTCGCCTCCCGATATGCGGCAGCAACAGG
GAAGGGAATGGGTTCATAACGGAATCCAAGTGCCATCTTTTGGCGGCGGC
GGAGTTCGTACAGACCGAGATGGAACAGCGGTTTTTTCACGCGGTGGTGG
GGAGGAGAGGGGGCGAATGGCTAAGGTAGATGTTGAATCAACGGAAAGCA
TCATCAGCGGAGATGGCAGTACGTCCAATACGTCTGATACTGACCTACCA
GAAACCGTGGTGCTCCCTCCGGTTTGTGCCTTGGGTAGCCCACAGAGAAG
GATGCATTTGCTAGGATCGATGGAGGGGAGCTCTCGAAGGACGACGGCAT
GA
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