mRNA_Ecto-sp13_S_contig12439.2024.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12439.2024.1
Unique NamemRNA_Ecto-sp13_S_contig12439.2024.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12439.2024.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 9.770e-42
Identity = 87/114 (76.32%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:    1 DSACSERSQVEVWAVMVQALAGLAAVHAISERSVHRAVCLDNILVAARSSPESPPGRRLPLAGXXXXXXXXXXXXXXXXXXXXSHPRGQHGFRRAKLGPPFPAALARPSAGCIA 342
            DSA SER QVEVWAVM+QALAGLAAVHA+SERSVHRAVCLDNILVAARSSPESPPGR LPLAG                    S P GQHGFRRAKLGPPFPAALARPSAGCIA
Sbjct: 1207 DSASSERFQVEVWAVMIQALAGLAAVHAVSERSVHRAVCLDNILVAARSSPESPPGRLLPLAGGGGEGAVAPNSDGSSSS---SDPSGQHGFRRAKLGPPFPAALARPSAGCIA 1317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12439.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYH1_9PHAE9.770e-4276.32Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12439contigEcto-sp13_S_contig12439:1614..1956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size345
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-14_001390.1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.4188902-CDS-Ecto-sp13_S_contig12439:1613..19551681462662.4188902-CDS-Ecto-sp13_S_contig12439:1613..1955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12439 1614..1955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12439.2024.1prot_Ecto-sp13_S_contig12439.2024.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12439 1614..1955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12439.2024.1

>prot_Ecto-sp13_S_contig12439.2024.1 ID=prot_Ecto-sp13_S_contig12439.2024.1|Name=mRNA_Ecto-sp13_S_contig12439.2024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
DSACSERSQVEVWAVMVQALAGLAAVHAISERSVHRAVCLDNILVAARSS
PESPPGRRLPLAGGGGGGSVSPNSDGSSSSSSSSHPRGQHGFRRAKLGPP
FPAALARPSAGCIA
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mRNA from alignment at Ecto-sp13_S_contig12439:1614..1956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12439.2024.1 ID=mRNA_Ecto-sp13_S_contig12439.2024.1|Name=mRNA_Ecto-sp13_S_contig12439.2024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=343bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12439:1614..1956+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCTGCTTGCAGTGAACGTTCCCAGGTGGAGGTGTGGGCGGTGATGGT
CCAGGCCCTCGCCGGCCTGGCCGCCGTTCACGCCATCTCCGAAAGGTCGG
TGCACCGTGCGGTTTGCCTCGACAACATCCTTGTAGCGGCGAGATCAAGC
CCTGAGTCCCCACCGGGACGGCGGCTCCCGCTGGCGGGGGGCGGTGGCGG
AGGATCGGTGTCTCCCAACTCTGATGGGTCGTCGTCATCGTCGTCGTCGT
CACACCCGAGAGGTCAGCACGGTTTCCGACGGGCCAAGCTCGGACCTCCC
TTCCCCGCCGCGCTTGCTCGGCCGTCGGCTGGATGTATTGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12439:1614..1956+

>mRNA_Ecto-sp13_S_contig12439.2024.1 ID=mRNA_Ecto-sp13_S_contig12439.2024.1|Name=mRNA_Ecto-sp13_S_contig12439.2024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12439:1614..1956+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCTGCTTGCAGTGAACGTTCCCAGGTGGAGGTGTGGGCGGTGATGGT
CCAGGCCCTCGCCGGCCTGGCCGCCGTTCACGCCATCTCCGAAAGGTCGG
TGCACCGTGCGGTTTGCCTCGACAACATCCTTGTAGCGGCGAGATCAAGC
CCTGAGTCCCCACCGGGACGGCGGCTCCCGCTGGCGGGGGGCGGTGGCGG
AGGATCGGTGTCTCCCAACTCTGATGGGTCGTCGTCATCGTCGTCGTCGT
CACACCCGAGAGGTCAGCACGGTTTCCGACGGGCCAAGCTCGGACCTCCC
TTCCCCGCCGCGCTTGCTCGGCCGTCGGCTGGATGTATTGCC
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