mRNA_Ecto-sp13_S_contig877.20240.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig877.20240.1 vs. uniprot
Match: A0A6H5L777_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE) HSP 1 Score: 1250 bits (3235), Expect = 0.000e+0 Identity = 933/1247 (74.82%), Postives = 959/1247 (76.90%), Query Frame = 1
Query: 1 AGLSAPVGEGRG-WTRSGTPELREGSSSSPTPVEEVLDPLLVPGQGWRRRRRSATVGGWDATRLQPTAKRRASIRTSAAPTSPVGLGPVAGLPGTDEGGWSGDDN---PATAAAAESAXXAGVAGASVKAVMPALAKAYLSPVHVKSPISRCYGAASSSSSDQRNRRHLQRASTVPSPSRTVTLASAISAEAVSAGATAGAISPTSRARAAGSRRXXXXXXXXXXXXXXAVVPEAGDCTRDRCQRPTADQLNDPVFRGRMKARTRAAKXXXXXXXXXXX-TGSGNCGGSALTGARCQPDRRIHQAGWVDDVGRGQQGKRGGGGVEQRQAAGFNGWMSSRRQDWGLDDVGLPAAQFRCVGSAAPSASSRRLSRSKTAPSPSKSXXXXXXXXXXXXXXXXXXAARAKPTAERLTGPSLGGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRPRSVGVGPRSHAKKKSRGNEEGVREDAGAVAAXXXXXXXXXXSADTTRADKTLTSSPSPRQRQKTSGSIWCRVVSHEGGRGAPAQKCCRQQRXXXXXXXVAVSPVMSAARQHHRSRGPRGEKMLRQASVQAAGTATAAPTPTAEKNPDSPXXXXXXXXXXGRSGSFVGLSLVLVGLPDDVHLGVERTIVAGSGRVLEDIPPPKTRGGLVFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVPSASRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASSYLLPGAREASKRXXXXXXXXXXXXXXXXXXXXAGGSHKASRAALAKAVSKTGTPLMGMAIGVAHPSPTSCERWAQVLRAAGAQTVLRITGDPLLLLLPPREETAAWTTSSPSRGTRSCSRGRGTVGASSLSSSSLQPGQLAGLDCVLCDFPGAWNGSGGGDDSECRAAAGRRPVTGNVGVPAIAGTTTKKAKSSPPSFSSLGLVLEAAKLEGVPVVALSWAIDCVVRGTRVRQQARPEYLTPFLDASAAAAWPSSRSPLLAGGTSTRLLVAVSQSGTRYEVSDHVYFSAAGRGRGXXXXXXXXXXXXXXXXXXXXXXXAAVGHIVHLERAGGSGGRVFATIEPLQIPYNKRAVVS---------------------------------------------------------------------------------------------------------GYCGRDPDVFVQQQRVPTVRGPPNLRTGK 3411
AG SAPVGE RG RSGTPELRE SSS+PTPVE V P L GQG R SATVGG DAT LQP AKRRA +TSAA T PVGLGPVAG G D GG SGDD+ PATAA A AGVAGA+VKAV PALA+ YLSP VKSPIS CYGAA+SSSS +R+ HLQRASTVPSP+RTVTL+SAISAE VS A+AGAISPTSRARAAGSRR AV PEA DCTRDRCQ+ TADQLNDPVFRGRMK RTRAA XXXXXX T SGN GGSALTGARCQPDRRIHQAGWVDDVGRGQQGKRG GGVEQRQAAGFNGWMSSRRQDWGLDDVGLPAAQ R S S XXXXXXXXXXXXXXXX AARAKPTAE TGPSLGGKS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RPRSVGVGPRSHAKKKSRGN+EGVREDAGAVAAXXXXXXXXX SAD TRADKTLTSSPSP RQKTSGS+ CR VSHEGGRG PA+KCCRQQR XXXX +AVSPV SAARQHHRSRGPRGEKMLRQASVQAAGTA AAPTPTAE DSP XXXX GRSG GLSLVLVGLPDDVH VERTIVAG GRVL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVPSA RLPRYVLAIATGTPLLHHLWVSDSAAEARPLPAS YLLPGAREAS+RXXXXXXXXXXXXXXXX AGGSHK SRAALAKAVSKTGTPL+GMAIGVAHPSPT+CERWAQVLRAAGAQTVLRITGDPLLLL PP+E+TA WTTSSPSRGTRSCSRGR T GASS SSSSLQ GQLAGLDCVLCDFPGAWNGSGGGDD+ECRAA GRRPV GN GVPAIAGT TKKAKSSPP FSSLGLV EAAKLEGVPVVALSWA+DCVVRGTRVRQQARPEYLTPFLDAS AA PSSRS LAGGT TRLLVAVS+SGTRYEV DHVYFSAAG GRGXXXXXXXXXXXXXXXXXXXXXX A VG IVHLERAGGSGGRVFATIEPLQIP NKRAVVS GYCGRDPDV+VQQQRVPT RGPP LRTGK
Sbjct: 1974 AGSSAPVGERRGRLIRSGTPELREASSSTPTPVE-VPGPSLALGQG-RXXXXSATVGGGDATCLQPPAKRRAGAKTSAAATPPVGLGPVAGFTGPDYGGGSGDDSAHRPATAAPAP----AGVAGATVKAVKPALAEVYLSPARVKSPISGCYGAATSSSSGRRHLHHLQRASTVPSPTRTVTLSSAISAETVSVCASAGAISPTSRARAAGSRRSSSMAVGASGDGGGAVFPEARDCTRDRCQKATADQLNDPVFRGRMKVRTRAANAXXXXXXSTCGNTVSGNGGGSALTGARCQPDRRIHQAGWVDDVGRGQQGKRGRGGVEQRQAAGFNGWMSSRRQDWGLDDVGLPAAQSRGAAS-----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAARAKPTAECFTGPSLGGKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPRSVGVGPRSHAKKKSRGNKEGVREDAGAVAAXXXXXXXXXGSADRTRADKTLTSSPSPGPRQKTSGSVRCREVSHEGGRGIPAKKCCRQQRATXXXXAMAVSPVTSAARQHHRSRGPRGEKMLRQASVQAAGTAAAAPTPTAENVRDSPAAAXXXXA--GRSGPLFGLSLVLVGLPDDVHRDVERTIVAGGGRVLDXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVPSAFRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRRXXXXXXXXXXXXXXXXATAKAGGSHKVSRAALAKAVSKTGTPLLGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRITGDPLLLL-PPQEKTADWTTSSPSRGTRSCSRGRRTAGASSSSSSSLQAGQLAGLDCVLCDFPGAWNGSGGGDDTECRAATGRRPVRGNGGVPAIAGTATKKAKSSPPPFSSLGLVFEAAKLEGVPVVALSWAMDCVVRGTRVRQQARPEYLTPFLDASVAAGRPSSRSQSLAGGTDTRLLVAVSRSGTRYEVGDHVYFSAAGSGRGXXXXXXXXXXXXXXXXXXXXXXQAEVGRIVHLERAGGSGGRVFATIEPLQIPDNKRAVVSSLGDSGGRAAGGGSGALGRSFLQVVVRGGGGYFASPSADSSVSRGRARRARELKKVVLAEKKGSTAAGAGTRTPGSQNWQKVEVSDAFLLGRVSVLSAREFNSRRGYCGRDPDVYVQQQRVPTARGPPTLRTGK 3204
BLAST of mRNA_Ecto-sp13_S_contig877.20240.1 vs. uniprot
Match: D7FGY7_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY7_ECTSI) HSP 1 Score: 808 bits (2088), Expect = 3.590e-279 Identity = 585/717 (81.59%), Postives = 598/717 (83.40%), Query Frame = 1
Query: 676 AVVPEAGDCTRDRCQRPTADQLNDPVFRGRMKARTRAAKXXXXXXXXXXX--TGSGNCGGSALTGARCQPDRRIHQAGWVDDVGRGQQGKRGGGG-VEQRQAAGFNGWMSSRRQDWGLDDVGLPAAQFRCVGSAAPSASSRRLSRSKTAPSPSKSXXXXXXXXXXXXXXXXXXAARAKPTAERLTGPSLGGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRPRSVGVGPRSHAKKKSRGNEEGVREDAGAVAAXXXXXXXXXXSADTTRADKTLTSSPSPRQRQKTSGSIWCRVVSHEGGRGAPAQKCCRQQRXXXXXXXVAVSPVMSAARQHHRSRGPRGEKMLRQASVQAAGTATAAPTPTAEKNPDSPXXXXXXXXXXGRSGSFVGLSLVLVGLPDDVHLGVERTIVAGSGRVLEDIPPPKTRGGLVFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVPSASRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASSYLLPGAREASKRXXXXXXXXXXXXXXXXXXXXAGGSHKASRAALAKAVSKTGTPLMGMAIGVAHPSPTSCERWAQVLRAAGAQTVLRITGDPLLLLLPPREETAAWT-TSSPSRGTRSCSRGRGTVGASSLSSSSLQPGQLAGLDCVLCDFPGAWNGSGGGDDSECRAAAGRRPVTGNVGVPAIAG 2814
AVVPEA DCTRDRCQ PTADQLNDPVFRGRMKARTRAAK XXXXXXX SGN GGSALTGARCQPD+RIHQ GWVDDVGRG QGKRGGGG VEQRQA GFNGWMSSRRQDWGLDDVGLPAAQ R VGSAAPSAS RLSRSKT XXXXXXXXXXXXXXXXXX ARAKPTAERLTGPSLGGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RPRS+GVGPRSHAKKKSRGN+EGV EDAGAVAA SAD+TRADKTLTSSPSPRQR+KTSGS+ CR VSHEGGRG PA+KCCRQQR VAVSPV SAARQHHRS GPRGEKMLRQASVQAAGTA AAPTPT E DSP GR G F GLSLVLVGLPDDVH V+RTIVA GRVLED+PPPKTRGGL R XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VSVPSASRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPAS YLLPGAREAS+ XXXXXXXXXXXXXXXXXXXX HKAS ALAKAVSKTGTPLMGMAIGVAHPSPT+CERWAQVLRAAGAQTVLR+TGDPLL+LL PREETA T TSSPSRGT SCSRGR T GASS SSSSLQ QLAGLDCVLCDFPGAWNGSGGGDD ECRAA GRRPV GN GVPAIAG
Sbjct: 12 AVVPEARDCTRDRCQEPTADQLNDPVFRGRMKARTRAAKAXXXXXXXSIGGNPASGNGGGSALTGARCQPDKRIHQVGWVDDVGRGLQGKRGGGGGVEQRQAVGFNGWMSSRRQDWGLDDVGLPAAQSRGVGSAAPSAS--RLSRSKTXXX--XXXXXXXXXXXXXXXXXXXXXARAKPTAERLTGPSLGGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCGCNGG-TRPRSIGVGPRSHAKKKSRGNKEGVGEDAGAVAAIPAVPAAAVGSADSTRADKTLTSSPSPRQRKKTSGSVRCREVSHEGGRGIPAKKCCRQQRARSSAAAVAVSPVTSAARQHHRSHGPRGEKMLRQASVQAAGTAAAAPTPTTENVRDSPAAAAAATAA-GRIGPFFGLSLVLVGLPDDVHREVDRTIVACGGRVLEDLPPPKTRGGLALR--RPAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVSVPSASRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRXXXXXXXXXXXXXXXXXXXXXXXXGHKASHVALAKAVSKTGTPLMGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGTWSCSRGRRTAGASSSSSSSLQAEQLAGLDCVLCDFPGAWNGSGGGDDGECRAATGRRPVRGNGGVPAIAG 720 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig877.20240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig877.20240.1 >prot_Ecto-sp13_S_contig877.20240.1 ID=prot_Ecto-sp13_S_contig877.20240.1|Name=mRNA_Ecto-sp13_S_contig877.20240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1138bp AGLSAPVGEGRGWTRSGTPELREGSSSSPTPVEEVLDPLLVPGQGWRRRRback to top mRNA from alignment at Ecto-sp13_S_contig877:9474..13202+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig877.20240.1 ID=mRNA_Ecto-sp13_S_contig877.20240.1|Name=mRNA_Ecto-sp13_S_contig877.20240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig877:9474..13202+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig877:9474..13202+ >mRNA_Ecto-sp13_S_contig877.20240.1 ID=mRNA_Ecto-sp13_S_contig877.20240.1|Name=mRNA_Ecto-sp13_S_contig877.20240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig877:9474..13202+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |