mRNA_Ecto-sp13_S_contig8761.20234.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8761.20234.1
Unique NamemRNA_Ecto-sp13_S_contig8761.20234.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8761.20234.1 vs. uniprot
Match: D7G729_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G729_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 4.010e-91
Identity = 160/172 (93.02%), Postives = 163/172 (94.77%), Query Frame = 1 
Query:   19 MLRLHILFLLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQATSRRGLSASVAPPSMSLTLLAEDAAKAAPDIPISPEQQESIISVLSVMSSVLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEALPPSDGEEEGNRLQRRMAKKEKRKSGKV 534
            MLRL IL LLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQATS+RGLSAS+APPSMSL LLAEDAAKAAPD+PISPEQQESII     MSSVLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEALPP DGEEEGNRLQRRMAKKEKRKSGKV
Sbjct:    1 MLRLTILLLLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQATSQRGLSASMAPPSMSLMLLAEDAAKAAPDMPISPEQQESIIXXXXXMSSVLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEALPPGDGEEEGNRLQRRMAKKEKRKSGKV 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8761.20234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G729_ECTSI4.010e-9193.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8761contigEcto-sp13_S_contig8761:2..2824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1694
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011250.1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464148.8779602-UTR-Ecto-sp13_S_contig8761:1..191681464148.8779602-UTR-Ecto-sp13_S_contig8761:1..19Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8761 2..19 +
1681464148.9286063-UTR-Ecto-sp13_S_contig8761:1667..28241681464148.9286063-UTR-Ecto-sp13_S_contig8761:1667..2824Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8761 1668..2824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464148.8959243-CDS-Ecto-sp13_S_contig8761:19..1131681464148.8959243-CDS-Ecto-sp13_S_contig8761:19..113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8761 20..113 +
1681464148.9062557-CDS-Ecto-sp13_S_contig8761:494..7311681464148.9062557-CDS-Ecto-sp13_S_contig8761:494..731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8761 495..731 +
1681464148.917087-CDS-Ecto-sp13_S_contig8761:1479..16671681464148.917087-CDS-Ecto-sp13_S_contig8761:1479..1667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8761 1480..1667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8761.20234.1prot_Ecto-sp13_S_contig8761.20234.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8761 20..1667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8761.20234.1

>prot_Ecto-sp13_S_contig8761.20234.1 ID=prot_Ecto-sp13_S_contig8761.20234.1|Name=mRNA_Ecto-sp13_S_contig8761.20234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MLRLHILFLLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQA
TSRRGLSASVAPPSMSLTLLAEDAAKAAPDIPISPEQQESIISVLSVMSS
VLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEALPPSDG
EEEGNRLQRRMAKKEKRKSGKV*
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mRNA from alignment at Ecto-sp13_S_contig8761:2..2824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8761.20234.1 ID=mRNA_Ecto-sp13_S_contig8761.20234.1|Name=mRNA_Ecto-sp13_S_contig8761.20234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2823bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8761:2..2824+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTTCGCAGTCGCCACCATGCTCCGGCTACACATTCTGTTTCTGCTGCT
GAGTGCAGCGCAGGCTTTTGTAGGTGGCCCCAACGTGCTGATCGGGCGGG
GAAACGCTGTATGTGAGTGTTCGGGCTACACCCGCGCCTAGGCAGCCGAG
GGTACTCATGTTGGTGCTCATGTTCACAACCCCGCTGCCAAGGCCTTCTC
TGCCAAACCTCACCTTCACATGCTAGAGATCTCTCGCATGTGGAACGATC
GTTGTCCCTCATCTGTTGTCTGCAAATCTTCGCAATTTGTATGTTATTCT
AGCATCCGACAAGACTCTTACACAACGGAGGATTTCGACTTGAGCGTCAA
GCGAGTTGCAGAGCTCGAGATTGGCTTGTTTGCTGTCACCGGCCCCGAGG
AGCTGACCAGCACACCCACACTCTTGCACACGTGCACGGTACACCTCCCC
CCTTGAGTGCCTCTCGAAACCCTTATGCTCTTGGCACGTTCAGATACCAA
GGGGTGGGGGTCAAGGATAGCTCGACACACCAGCGCCGCGCGGCAAGCGA
CGTCGCGGCGAGGGCTTTCAGCATCGGTGGCCCCTCCCTCGATGAGCTTG
ACGCTGCTAGCAGAGGACGCAGCGAAAGCAGCACCAGACATTCCAATATC
GCCGGAGCAGCAGGAGTCTATCATCTCGGTGCTGAGCGTGATGTCCTCGG
TGTTGCTTCTCATCATTATCTCGGGGGCCGGTGAGTAGTGTTCCCTCAGT
GTTTGTTGGTTGTCCCCACTGATGGGAAATCAAGTCCGCCTTAATGGGCA
CCTGACCTCCAAGAGCTGGTTTGCCAGTACTCGAGCAAACACCCTTCTCC
CCCTCTTCGTTTTAAGCATGAGTGTAACAGACGGACAGAGATTCCATCCG
TACCCATTCGAAAAGTAACGAAGTGATCAATTAAGCATGGCCTGGTGTGT
AGAACGTAGGAATCGACGAGTGTGTGAAGACGACTCGTTTTCTGACAGCA
GCCCGATTGTTCTCAGTACAACTGATGCTGATCGTGCTGCTACCGTTGTG
CTTTGCTTGGTTGATGTTGGAGCCGTTATGGTGCTTCACACGCCCGGCCA
TCGCGTCACAGCTTGACGTCCAACCTCCTCCACGAGGCTTAGATTCAACA
CACGAAGTCTTACCGGGAAGAACTCCCCTCGGAAACACCACTTGTCACGT
GCAACATGAGGCACGAGTCCTCTAACCACCAAGCTTGCGGCAGCAACCAA
AGGGCCAGGGGATCGAGCATGTCCCTGCATGTATGCGAGCCCCAGGCCCG
TTTGTCCAGTCGTCCTTTCCGGTTTCAAAAAAACTTTACCCAATCGGAGA
AATCATGCGGCATCCCGTCCGGGACCAGACGCCCTTGTCCTGCAACCAGC
CTCGACATATCTACGCCATCATTTCTCCGGTCCCTCCCTCCCGTATACAT
CTTCGCCCGTCCTTCATGTCTCCCTAAGTTTACTTGTCGCTGGAGGAGTG
GAAGAACAAGAAGGAGCTCAAGGAAACGGATAAATACACCAGCGCGGGCC
AGCTACCTCCGGATATCGCGCCGGAGGCTTTACCGCCGAGCGATGGCGAA
GAAGAGGGTAACCGATTGCAACGACGCATGGCGAAGAAGGAGAAGAGGAA
ATCGGGCAAGGTTTAGAGGAACGAGGTGAAGACGGTATCGCTGGCCCAAG
CGGAGTTAAGGATGGACCCCACGTGACATAGCGAGGAACCGTTGCCGTTT
CGCCGAGCCCCTGTTGATGCGGTCATCTTCGGCTGGCATGCTTTCCTGTT
CAATGAGGGCCTCTTGCGGGGTGTCTTTCGAAATGTACCGAGCAGAGCCT
GCCCGTCATTGGTCAACTATTTGACATGGATACTAGCGGCGTCTTATTTG
TGGGGATGGTTGCTTCTGTTTCGACTTTTCAGGGCGCGCTTGACTTCCTG
GCCAGTTTTTGCTGCTTCAGGACCTGCTTGTTTTGAACAGCGACGGGGTC
TTGTTTGGTTGAGTCATGGTTGGCGCGAGGCAGCGAACATGCTGACTCGG
TTGGATCACCCCTCCGCTCCTTTCCTGCTACAACGAAGCTAGTTGACGCA
CTGGTGCTTTCCCATCGGGTGGTGCCGCTCAGGCGGTCCCTGGTGGTCTA
GACCATACCTCGAAAGCTATGTACCTCTCACGTTGTTCAGGGGGGAAAGA
CTTGAAACTGGAATGTGAAGACCTACTTTGGACTTGACGGTCGCGAGAGG
CTATAAAATCGTTGAGGTTTCGATGGGTTTTGAAGACCTCCATGCCTGTC
GAAGTTTGGTCGTGAATCGATTGTAGGAGCAAGCACCGTTGTAATGTCGA
ACATGACGGGCACAATAACCTTTTCATACAGACAGAGCGACGTTTCCGGA
GGGCTAGGGACGGTTCGGAACTTTCGTCGTTGAGATACTTCGTAGAAGCG
TTAGAGCCTTCCTATTGTACAAGTAGGTAGAGTTCTATGCCCTTTACTAG
GTAAATATTTGATTCGCGTGGACTCCACCGTAAGGATACGAGATCATCTC
GCCCACGTAGAAGTAGGGGAATAACTAGATGCCTGTTTTGATAAGACTTT
GCTAAACATGCTTTGAAACCCCTTCTACTAACTTCCTGACAACGGTAGAG
TATTTCTTGCGCCCGAACGGCGAGCCACACACGTAGCATCTGAGTTAGCA
CTAGATTCAGGGCTGAGAGGAGAGATGAAACACCTGTGAAGCCAACAGCT
GAAGTGATTGAACATTGTCTTGTACCAGGTACATATTAAAGCAGAAAACA
ATTTCGCCCGGCCTATTGTACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8761:2..2824+

>mRNA_Ecto-sp13_S_contig8761.20234.1 ID=mRNA_Ecto-sp13_S_contig8761.20234.1|Name=mRNA_Ecto-sp13_S_contig8761.20234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8761:2..2824+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCGGCTACACATTCTGTTTCTGCTGCTGAGTGCAGCGCAGGCTTT
TGTAGGTGGCCCCAACGTGCTGATCGGGCGGGGAAACGCTGTATATACCA
AGGGGTGGGGGTCAAGGATAGCTCGACACACCAGCGCCGCGCGGCAAGCG
ACGTCGCGGCGAGGGCTTTCAGCATCGGTGGCCCCTCCCTCGATGAGCTT
GACGCTGCTAGCAGAGGACGCAGCGAAAGCAGCACCAGACATTCCAATAT
CGCCGGAGCAGCAGGAGTCTATCATCTCGGTGCTGAGCGTGATGTCCTCG
GTGTTGCTTCTCATCATTATCTCGGGGGCCGTTTACTTGTCGCTGGAGGA
GTGGAAGAACAAGAAGGAGCTCAAGGAAACGGATAAATACACCAGCGCGG
GCCAGCTACCTCCGGATATCGCGCCGGAGGCTTTACCGCCGAGCGATGGC
GAAGAAGAGGGTAACCGATTGCAACGACGCATGGCGAAGAAGGAGAAGAG
GAAATCGGGCAAGGTTTAG
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