prot_Ecto-sp13_S_contig8761.20234.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8761.20234.1
Unique Nameprot_Ecto-sp13_S_contig8761.20234.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length173
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8761.20234.1 vs. uniprot
Match: D7G729_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G729_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 1.010e-96
Identity = 160/172 (93.02%), Postives = 163/172 (94.77%), Query Frame = 0 
Query:    1 MLRLHILFLLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQATSRRGLSASVAPPSMSLTLLAEDAAKAAPDIPISPEQQESIISVLSVMSSVLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEALPPSDGEEEGNRLQRRMAKKEKRKSGKV 172
            MLRL IL LLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQATS+RGLSAS+APPSMSL LLAEDAAKAAPD+PISPEQQESII     MSSVLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEALPP DGEEEGNRLQRRMAKKEKRKSGKV
Sbjct:    1 MLRLTILLLLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQATSQRGLSASMAPPSMSLMLLAEDAAKAAPDMPISPEQQESIIXXXXXMSSVLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEALPPGDGEEEGNRLQRRMAKKEKRKSGKV 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8761.20234.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G729_ECTSI1.010e-9693.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 116..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..115
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..90
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.905
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8761contigEcto-sp13_S_contig8761:20..1667 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8761.20234.1mRNA_Ecto-sp13_S_contig8761.20234.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8761 2..2824 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8761.20234.1 ID=prot_Ecto-sp13_S_contig8761.20234.1|Name=mRNA_Ecto-sp13_S_contig8761.20234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MLRLHILFLLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQA
TSRRGLSASVAPPSMSLTLLAEDAAKAAPDIPISPEQQESIISVLSVMSS
VLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEALPPSDG
EEEGNRLQRRMAKKEKRKSGKV*
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