mRNA_Ecto-sp13_S_contig12438.2023.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 283 bits (725), Expect = 1.270e-85 Identity = 175/454 (38.55%), Postives = 234/454 (51.54%), Query Frame = 1
Query: 73 DGNPVGRRGAGKVFGIDPKLARDWETQEGEL--VAFSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAA-VTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKF-----------------------------------RSVLRKIFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
DG PVG GA KV + K +W E +L + K + +H G + T AE ++ A + VM KLL P GGMP+ PE+ F+ +N+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + K SV ++FE + NMDQ P+Q +M ETT++ TGAK RISTGG EK R+T+VL V DG+KV PRII++GTPF R G+P G+S GVQ+ W D + + W++ + RP + S +RP +LVLDDF+CH +E F L A T V+ GGLTP+ QPLDR +NK+ KR R KYT + RSG + P RG+V+TW KE W I+ +T+ + K+CGLTL L GSEDH
Sbjct: 113 DGQPVGNNGAAKVLQVPRKRIIEWLKPEAQLREKVSANPKLSKAKQVHSGGKVSTVDAEQPFPCGLHQRATQAAPRLGNREVMNKLLELKPDALGGMPANAKPEEAIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCSKICGLTLALDGSEDH 566
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE) HSP 1 Score: 276 bits (707), Expect = 1.240e-83 Identity = 175/458 (38.21%), Postives = 234/458 (51.09%), Query Frame = 1
Query: 85 VGRRGAGKV-FGIDPKLARDWETQEGEL--VAFSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGSSPRDR---------RPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
VG +G+ + + K +W QEG+L + K + +H G ++ T AE A+ D IN RK VM KLL P GGMP+ PE+ F+ +N+WY RF KR+ FSI+R+ SVGQK P+G+EG AWA + K R L K +FE L NMDQTP+Q +M ETT+E TG K RISTGG+ EK R+T+VL V DG+ V P II+KGTPF R G+P G+S GVQ+ W + + W+ + P + R RP +LVLDDF+CH++E F L A T V+ GGLTP+ QPLDR +NK+ KR R KYT + RSG + P RG+V+TW KE W ++++T+ + FK+CGLTL L GSEDH
Sbjct: 77 VGGKGSYPIRLQVPRKRIIEWLKQEGQLREKVSANPKLSKAKQVHSGGKASTVDAEQALVDYINEQRKLHRGCGNREVMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSGKLKPPERGVVSTWCKEAWEFVTSETVNTCFKICGLTLALDGSEDH 533
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE) HSP 1 Score: 276 bits (705), Expect = 7.530e-83 Identity = 184/489 (37.63%), Postives = 244/489 (49.90%), Query Frame = 1
Query: 7 GRSAHENMQKLEVLKYSRSKC-ADGNPVGRRGAGKVFGIDPKLARDWETQEGEL--VAFSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF--RTSFGYPPAGISLGVQKSW--------------------------------------WCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
G+ ++ KL Y+R C DG PVG GA V + K +W QE +L + K + +H G ++ T AE A+ D +N RK VM KLL P GGM + PE+ F+ +N+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + K R L K +FE L NMDQTP+Q +M ETT+E TGAK RISTGGE EK R+T+VL V DG+KV PRII+KGTPF T G + + +W W D + + W+ + RP + S +RP +LVLDDF+CH++E F L AKT V+ GGLT + QPLDR +NK+ KR R KYT RSG ++ P G+V+TW KE W I+++T+ + FK+CGLTL L GSE H
Sbjct: 79 GKGSYPIRFKLNAATYTRKICPCDGQPVGNNGAAIVLQVPWKRIIEWLKQEEQLREKVSANPKLSKAKQVHSGGKASTVDAEQALVDYMNEQRKQHRDCGNREVMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVADARSGKLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSEHH 565
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 265 bits (677), Expect = 8.670e-81 Identity = 156/372 (41.94%), Postives = 203/372 (54.57%), Query Frame = 1
Query: 310 MAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
M KLL P GGMP+ PE+ F+ +N+WY RF KR+ FSI+R+TSVGQK P+G EG AWA + K R L K +FE L NMDQTP+Q ++ ETT+E TGAK RISTGG+ EK R+T+VL V DG+KV PRII+KGTPF R G+P G+S GVQ+ W D + + W++ + RP + S +RP +LVLDDF+CH++E F L A T V+ G LTP+ QPLDR +NK+ KR R KYT + RSG + P RG+V+TW KE W + +T+ + F +CGLTL L GSEDH
Sbjct: 1 MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDH 371
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE) HSP 1 Score: 267 bits (682), Expect = 1.730e-76 Identity = 171/461 (37.09%), Postives = 231/461 (50.11%), Query Frame = 1
Query: 34 KLEVLKYSRSKCADGNPVGRRGAGKVFGIDPKLARDWETQEGELVA--FSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRP--GSSPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWI----RDNFGRSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTL 1206
KL+V+ ++R C DG P G GA KV + + +W E L A + K + +H ++ E A+ + IN RK+ M KLL P GG+ + PE+ + +WY RF KR++FSI+R+TSVGQK P+G EG AWA + K R L + +FE L NMDQTP+Q +M ETT+E TGAK RI+TGG+ EK R+T+ L V DG+KV RII+KGTPF R+ G P G+S GVQ+ WCD + W+ + RP GS R RR +LVLDDF+CH+++ F L A T V+ GGL P+ QPLDR +NK+ KR R YT RD ++G + P RG VATW K WA I+ + + + FK+CGLTL
Sbjct: 61 KLKVVAFTRVVCEDGKPGGNSGAAKVLDVPRRRIVEWVRDEESLRAKVSANPKLSKAKQIHARGKASRADIEEALVEFINDQRKHHVGCGSMAAMNKLLELKPDALGGLAAKPKPEEALALNSKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRR-CILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDP--KTGKLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTL 517
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 251 bits (641), Expect = 5.350e-76 Identity = 156/401 (38.90%), Postives = 205/401 (51.12%), Query Frame = 1
Query: 310 MAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFR-----------------------------------SVLRKIFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSY-----------------------------FKVCGLTLNLRGSEDH 1230
M KLL P GGM + P + F+ N+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + K R SV ++F+ L NMDQTP+Q +M ETT+E TGAK RISTGG+ EK R+T+VL V DG+KV PRII+KGTPF R +P G+S GVQ+ W D + + W++ + RP + S +RP +LVLDDF+CH++E + L A T V++ GGLTP+ QPLDR +NK+ KR R KYT + RSG + P RG+V+TW KE W I+ +T+ S FK+CGLTL L GSEDH
Sbjct: 1 MNKLLELKPNALGGMSANAKPTEALAFKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSEDH 400
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 243 bits (619), Expect = 7.050e-68 Identity = 174/513 (33.92%), Postives = 229/513 (44.64%), Query Frame = 1
Query: 34 KLEVLKYSRSKCADGNPVGRRGAGKVFGIDPKLARDWETQEGELVAFSKQSA--GKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFR-----------------------------------SVLRKIFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPG-SSPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKY------------------------------------------------TIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSED 1227
KL +++R C DG PVG GA KV G+D + W +E + K+ K +S+H G T + E +ED IN ++ AG ++ FR + WY+ F +RH FSI+R+TSVGQK P G+EG A+A + K R SV K+FE L NMDQTP+Q +M ETT+E G K RISTGG+ EK R+T L V DG KV RII+KG PF RT FGYP +G+ VQ+ WCD + W+++ + RP S +R S+LVLDDFRCHR E F + L T V++ GGLTP+ QPLDR +NKE KR R T ++ ++G + P RGLV+T KE WA I+ +T+ FKVCGLTL L GSED
Sbjct: 4 KLTAAEFTRVLCEDGQPVGNSGAAKVLGVDRRRVITWIGEEATMKKLVKEKPKLSKAKSIHVGMAPTTAEVEQDLEDCINE-------------------QLAASAG---------EILAFRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADPKTGKLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSED 487
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE) HSP 1 Score: 225 bits (574), Expect = 2.410e-64 Identity = 156/467 (33.40%), Postives = 213/467 (45.61%), Query Frame = 1
Query: 34 KLEVLKYSRSKCADGNPVGRRGAGKVFGIDPKLARDWETQEGELVA--FSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRP--GSSPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKR--GFRAKYTIWIRDNFGRSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
KL+ + ++R C DG PVG GA KV + + +W E L A + K + +H G ++ T E A+ + IN RK+ L F+ + +WY RF KR++F+I+R+TSVGQK P+G EG AWA + K R L + +FE L NMDQTP+Q H R + G E E R+T+ L V DG+KV RII+KGTPF R+ G P G+S GVQ+ WCD + W+ + RP GS R RR +LVLDDF+CH+++ F L A T V+ GGLTP+ Q LDR +NK+ KR ++G ++ P RG VATW K WA I+ +T+ + FK+CGLTL L GSEDH
Sbjct: 74 KLKAVAFTRVVCEDGKPVGNSGAAKVLDVPRRRIVEWVRDEESLRANVSANPKLSKAKQIHAGGKASTADIEEALVEFINDQRKHHVGCEEALA--------------------------FKSKFKSWYQRFRKRNKFNIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQ---------------HERDAGGKEKE--RFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVEGMSFGVQEKSWCDLRECKLWIKGSWKLRPNNGSIVRQRR-CILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQLLDRMLNKQMKRLLXXXXXXXXXXXXXXPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDH 496
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE) HSP 1 Score: 212 bits (540), Expect = 7.900e-61 Identity = 119/268 (44.40%), Postives = 158/268 (58.96%), Query Frame = 1
Query: 514 QKFRSVLRKIFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRD-NFGRSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
++ SV ++FE L NMDQTP+Q +M ETT+E TGAK R+STGGE EK R+T+VL V DG+KV RII+ GTPF R G+P G+S GVQ+ W D + + W + + RP + S +RP +LVLDDF+CH++E F L A T V+ GGLTP+ QPLDR +NK+ KR R+KYT + RSG + P RG+V+TW K W I+ +T+ + FK+CGLTL L GSEDH
Sbjct: 38 EQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGE-EKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASATDARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDH 304
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE) HSP 1 Score: 215 bits (548), Expect = 2.360e-60 Identity = 152/413 (36.80%), Postives = 204/413 (49.39%), Query Frame = 1
Query: 196 QRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTG-GE----------------------AEKLRYTVVLTVRGDGQKVLPRIIYKGTPF--RT--SFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRP--GSSPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTI----WIRDNFGRSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
+RS G+++D E A+ + IN RK+ VM KLL P GG+ + PE+ F+ + +WY RF KR++FSI+R+TSVGQK P+G EG AWA + K R L + +FE L NMDQTP+Q +M ETT+E GAK RI+TG GE + ++R + L G + RT S G P GVQ+ WCD + W+ + RP GS R RR +LVLDDF+CH+++ F L A T V+ GGLTP+ QPLDR +NK+ KR R YT RD ++GN++ P RG VATW K WA I+ +T+ + FK+CGLTL L GSEDH
Sbjct: 115 ERSGAVGKKADI---EEALVEFINDQRKHHVGCGSMAVMNKLLELKPDALGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLEKAGAKDARIATGAGEKRRNASRSAWLPRRMARSRLASSSRVRLSFRLPRPGXXXXXXXXXXXXXXXYFPRTAPSTGSPWEACPSGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRR-CILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDP--KTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDH 521 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12438.2023.1 >prot_Ecto-sp13_S_contig12438.2023.1 ID=prot_Ecto-sp13_S_contig12438.2023.1|Name=mRNA_Ecto-sp13_S_contig12438.2023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp MQKLEVLKYSRSKCADGNPVGRRGAGKVFGIDPKLARDWETQEGELVAFSback to top mRNA from alignment at Ecto-sp13_S_contig12438:2643..4622+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12438.2023.1 ID=mRNA_Ecto-sp13_S_contig12438.2023.1|Name=mRNA_Ecto-sp13_S_contig12438.2023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12438:2643..4622+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12438:2643..4622+ >mRNA_Ecto-sp13_S_contig12438.2023.1 ID=mRNA_Ecto-sp13_S_contig12438.2023.1|Name=mRNA_Ecto-sp13_S_contig12438.2023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12438:2643..4622+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |