mRNA_Ecto-sp13_S_contig8749.20222.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8749.20222.1
Unique NamemRNA_Ecto-sp13_S_contig8749.20222.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: D7G138_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G138_ECTSI)

HSP 1 Score: 438 bits (1126), Expect = 9.480e-153
Identity = 232/292 (79.45%), Postives = 246/292 (84.25%), Query Frame = 1
Query:    1 MAAYGGHVDAIRKLRRAKAKPCLAARVPDSNNNAANVPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAILSAARCDRERAAMHLLHHHEGRNTAGTTEYANTVGPYGTTPLFLAVGCSH-SPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIADGTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPVKGTSTTRTACGNWSLMGSFMKRGGGARRSKLAAIFRYSAKPSSIKFAH 873
            MAAYGGHVDAIR+L RAKAKPCLAAR+PDSNNNAANVPLAV+AL GYSE+VQ+FINEVGIEG GGARGGEQA AVATREQHMDVMRALTNAGV+DTGEAILSAA C RERAAMHLLHHHEGRNTAGT EYANTVGP GTTPLFLAVGCS  SPR++RLLVD GA  +       P  G   F       ++     K  ADGTEVTDEQKRMLEGTR FFTCVEAVHAV WLWANDAPS+AR VKGTSTTRT CG+WSLM S MKRG G+RRSKLAAIFRYSAKPSSIKFAH
Sbjct:    1 MAAYGGHVDAIRQLLRAKAKPCLAARIPDSNNNAANVPLAVSALLGYSEMVQEFINEVGIEGRGGARGGEQALAVATREQHMDVMRALTNAGVVDTGEAILSAAGCGRERAAMHLLHHHEGRNTAGTREYANTVGPNGTTPLFLAVGCSRCSPRIMRLLVDDGAGGS----NGKPSWGGWCFPQHAAGSSEIPVARKNNADGTEVTDEQKRMLEGTRRFFTCVEAVHAVFWLWANDAPSTARHVKGTSTTRTTCGHWSLMVSLMKRGDGSRRSKLAAIFRYSAKPSSIKFAH 288          
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.780e-46
Identity = 115/286 (40.21%), Postives = 150/286 (52.45%), Query Frame = 1
Query:    1 MAAYGGHVDAIRKLRRAKAKPCLAARVPDSNNNAANVPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAILSAARCDRERAAMHLLHHHEGRNTAGTT-EYANTVGPYGTTPLFLAV-GC-SHSPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIADGTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPVKGTSTTRTACGNWSLMGSFMKRGGGARRSKLAAIFRYSAK 849
            +AA  G V  +R+L R  A P L    P  N     VPL +AA HG+++VV++ I E+GIEGC     G  A A A   QH+D+M  LT AGV+DTG+A+  AA    E +   LL H       G    Y N     G TPL +   GC S +PR++R+LVDAGAD T PV + N +GG  VF++TPLA  K    +K +ADG   T E  + LE        V+AVHAVSWLW + AP   R  +  +          LM   +KR    R   +A + RYS K
Sbjct:  246 IAAEEGQVAVMRELLRGNANPLLIQTSPPGNTT--TVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGV-VFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATE--TDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 4.970e-45
Identity = 117/285 (41.05%), Postives = 154/285 (54.04%), Query Frame = 1
Query:    4 AAYGGHVDAIRKLRRAKAKPCLAARVPDSNNNAANVPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAILSAARCDRERAAMHLLHHHEGRNTAGTTEYANTVGPYGTTPLFLAVGCSHSPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEK-KIADGTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPV-KGTSTTRTACGNWSLMGSFMKRGGGARRSKLAAIFRYSAKP 852
            AA+ G+VDA R L  AKA P L   VPD +     +PL  AA +G+ EVV + I +VGI+GCGG+ GG +A   A + +++++M  LTNAGV+DTG A++ AA    E     LL     R T     Y NT    G TPL   +   + PR++RLLV+AGAD T PV + N  GGD V   TPL L      +K K+      + EQ   LE  R     VEAVHAVSWLW +D  +  R   +GT  T       +L     +R    R+  LAA+ RYS+KP
Sbjct:  155 AAWKGNVDAARLLLLAKADPLLTT-VPDPSGRTF-LPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQ-HYRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSI-TPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435          
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 4.200e-41
Identity = 114/284 (40.14%), Postives = 150/284 (52.82%), Query Frame = 1
Query:    4 AAYGGHVDAIRKLRRAKAKPCLAARVPDSNNNAANVPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAILSAARCDRERAAMHLLHHHEGRNTAGTTEYANTVGPYGTTPLFLAVGCSHSPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIADGTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPV-KGTS-TTRTACGNWSLMGSFMKRGGGARRSKLAAIFRYSAK 849
            AA+ G+V A+  L  AKA P L     DS      +PL VAA +G+ EVV + I +VGI+GCGG+ GGE A   A     +D+M  LT+AGV+DTG A++ AA    E     LL    GR +     Y NT+   G T L   +     PR+++LLV+AGAD T PVL+ N  G D  FH TPL L   L   +       +T E++  LE  R      EAVHAVSWLW +D P+      KGT  TT T+      +   + R    R+  LAA+ RYS+K
Sbjct:  155 AAWNGNVVAVWLLLLAKADPLLTC-ASDSGKERF-LPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRCR-PRVVQLLVEAGADTTSPVLICNQPGEDD-FHITPLGLTMCLLGGRS---AKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSK 431          
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.270e-38
Identity = 111/280 (39.64%), Postives = 143/280 (51.07%), Query Frame = 1
Query:   40 LRRAKAKPCLAARVPDSNNNAANVPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAG-VIDTGEAILSAARCDRERAAMHLLHHHEGRNTAGTTEYAN-TVGPYGTTPLFLAV----GCSHSPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIADGTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPVKGTSTTRTACGNWSL----MGSFMKRGGGARRSKLAAIFRYSAK 849
            L RAKA P L +  P      + VPL +AALHG  +V ++ I +VGI GCGG  GG +A   A  E+H++ M  L +AG V+DTG A++ AA   R  A   LL     R  A    Y N T  PYG TP+  AV    G   SP+++RLLVDAGA+ T  V +            TPLA    L  E ++ DG   T EQ + L+ TR   +  EAVHAVSWLWA+  P       G + T TA    +     M   ++R  G R   L  +FRYS K
Sbjct:  164 LLRAKANPLLCSHTP---MGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLR----RRQADADAYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRV-DGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYSRK 435          
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.990e-34
Identity = 108/292 (36.99%), Postives = 155/292 (53.08%), Query Frame = 1
Query:    1 MAAYGGHVDAIRKLRRAKAKPCLAARVPDSNNNAANVPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAILSAARCDRERAAMHL-LHHHEGRNTAGTTEYANTVGPYGTTPLFLAVGCSHS---PRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIADGTE-VTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSA-RPVKGT--STTRTACGNWSLMGSFMKRGGGARRSKLAAIFRYSAKP 852
            +AA+ G+VDA+R L  AK  P L   +  S    A++PL VAA  G+ EVV + I +VGI GCGG+ GG +A   A R +H+D++  LTNAGV+DTG   L+  R    R  + + +   +G    G T     V  +     F A+ C H    PR++RLLV+AGAD T  V +    G D +   TP+ L   L  +     GTE +T+EQ   LE        VEA+HAVSWLW++D  +      +GT  +T+++  G   ++    +     R   LAA+ RYS+KP
Sbjct:   56 LAAWEGNVDAVRLLLLAKVDPLLTPHLGTSER--ASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDTG---LARGRRIWRRGPLEVSVGAGKGEENHGWT----CVCEHPQRCRFDAIACWHQRCRPRVVRLLVEAGADTTSTVPIDGLPGTDNI---TPMGLTMLLLHDL----GTEPLTEEQLNALEAIHRLLLRVEALHAVSWLWSSDICNCTYSTAQGTDRTTSKSTAGTPLVLTMRQRARSKEREVPLAALLRYSSKP 331          
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.370e-32
Identity = 101/265 (38.11%), Postives = 130/265 (49.06%), Query Frame = 1
Query:   61 PCLAARVPDSNNNAANVPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAILSAARCDRERAAMHLLHHHEGRNTAGTTEYANTVGPYGTTPLFLAVGCSH-SPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIADGTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPVKGTSTTRTACGN-WSLMGSFMKRGGGARRSKLAAIFRYSAK 849
            P L  R+   N     VPL  AAL+G+  V ++ +   GI GC GA  G  A   A  +QH+DVM  L +AGV+DTG A+++     RERA   LL   +G  TA TT  +      G TPL  AV     SPR++RLLVDAGAD TL V + +  G    +  TPL  A    L +K+ D    T +Q R L  +R     VE VHA SWLW   A   A P K  + T +  G         M R    R + L  +FR + K
Sbjct:  170 PLLPTRMSSGNTF---VPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQ-KGEGTARTTYASTPRDGRGHTPLLSAVTTGPCSPRVVRLLVDAGADATLAVRVPDGFGRSTKY--TPLDCATRC-LAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPAAPGKKRAQTESTNGKPLKSRLPIMWRRSARRGAALPGVFRLAKK 427          
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.770e-32
Identity = 91/248 (36.69%), Postives = 127/248 (51.21%), Query Frame = 1
Query:  109 VPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAILSAARCDRERAAMHLLHHHEGRNTAGTTEYANTVGPYGTTPLFLAVGCSH-SPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIADGTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPVKGTSTTRTACGNWSLMGSFMKRGGGARRSKLAAIFRYSAK 849
            +PL VA     S VV++ +  +GIE CGG   G  A  +A   +H+ ++  L +AGV+D G A+ +AA    E +   LL  HEG+++A  + Y N +  +G TPL   + C H S R++RLLVDAGAD T    +   +G   +   T L     L LEKK A G   T E+   L+ T      VEA HA+SW+W   + S  RP +     R A     L     +R  G RR+ L A+ RYS K
Sbjct:  189 LPLDVAXXXXXSAVVRELLQRLGIERCGGESRGVDALCLAVTGRHVGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGKHSASRSAYVNKLNRFGLTPLLENITCGHCSARIVRLLVDAGADTTAAYRLTGKKG-QAMAATTHLTAMGCLLLEKK-AKGD--TGEEPHNLQATFRLLLQVEAAHAISWVWPTGSHSVDRPPR---RQRRAEAPVRLTLPMTRRDTGTRRALLGAVSRYSEK 429          
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: D8LPY4_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPY4_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.440e-31
Identity = 99/250 (39.60%), Postives = 137/250 (54.80%), Query Frame = 1
Query:  109 VPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAILSAARCDRERAAMHLLHHHEGRNTAGTTEYANTVGPYGTTPLFLAVGCSHSPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIADGTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPVKGTSTTRTACGNWSLMG-SFMKRGGGARRSK--LAAIFRYSAK 849
            V L VAA  G+SEVV++ I   GI+ C G  GG  A  +AT+ QH+D MR L  AGV+DTG ++ +AA   RERA   LL   + +       Y ++      TPLF+AV  + +PR++RLL+DAGA+  L   ++    G  + + T L LA    L  ++ DG   T E+   LE +R     VEAV AVSWLW   +P+ A P+ GT   + A G  S +G    +R   A R+   LA +FRYS K
Sbjct:  174 VALDVAAQKGHSEVVRELIQYRGIKTCAGVTGGAIALNLATKHQHVDTMRLLLAAGVVDTGMSLFTAATLGRERAVKLLL---QQKWATPGDRYIDSRNECHCTPLFVAVSAA-APRIVRLLLDAGANEKLTRPVSYSFHGK-MKNETLLGLADNN-LRYEVHDGRRATSEETNRLEESRRLLMRVEAVRAVSWLWGTTSPAYAIPL-GTDGNKDAKGGASRLGVRIARRETRAHRNGALLATLFRYSVK 416          
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.080e-30
Identity = 98/240 (40.83%), Postives = 119/240 (49.58%), Query Frame = 1
Query:   46 RAKAKPCLAARVPDSNNNAANVPLAVAALHGYSEVVQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAILSAARCDRERAAMHLLHHHEGRNTAGTTEYANTVGPYGTTPLF----LAVGCSHSPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIADGTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPVKGTSTTRT 753
            RAKA P L  RV   N    ++PL  AA +G   VV + +   GI GCGG  GG  A  +A  + HMDVM ALT AGV+DTG A++ A           LL    G  +  +   +    P G TPL     + +  S SP+++RLLVDAGAD T  V      G   V   TPL+LA    L  KIA    + DE  R LE  R     VEAVHA SWLW N  P    P  GT+ T T
Sbjct:  168 RAKANPLLT-RV---NLAWQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVC-TPLSLATEA-LRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATET 401          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8749.20222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G138_ECTSI9.480e-15379.45EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI1.780e-4640.21EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KJA9_9PHAE4.970e-4541.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV0_9PHAE4.200e-4140.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1H7_ECTSI1.270e-3839.64EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7FXY7_ECTSI1.990e-3436.99EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LL76_ECTSI2.370e-3238.11EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FY91_ECTSI4.770e-3236.69EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D8LPY4_ECTSI1.440e-3139.60EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP... [more]
D7FVK3_ECTSI1.080e-3040.83EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8749contigEcto-sp13_S_contig8749:2862..4451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score174.1
Seed ortholog evalue9.9e-41
Seed eggNOG ortholog2880.D7FT11
Model size903
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionEsV-1-199
Ec32 orthologEc-07_003230.1
Cds size903
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.7030017-CDS-Ecto-sp13_S_contig8749:2861..29281681464147.7030017-CDS-Ecto-sp13_S_contig8749:2861..2928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8749 2862..2928 -
1681464147.7158756-CDS-Ecto-sp13_S_contig8749:3615..44511681464147.7158756-CDS-Ecto-sp13_S_contig8749:3615..4451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8749 3616..4451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8749.20222.1prot_Ecto-sp13_S_contig8749.20222.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8749 2862..4451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8749.20222.1

>prot_Ecto-sp13_S_contig8749.20222.1 ID=prot_Ecto-sp13_S_contig8749.20222.1|Name=mRNA_Ecto-sp13_S_contig8749.20222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
MAAYGGHVDAIRKLRRAKAKPCLAARVPDSNNNAANVPLAVAALHGYSEV
VQDFINEVGIEGCGGARGGEQARAVATREQHMDVMRALTNAGVIDTGEAI
LSAARCDRERAAMHLLHHHEGRNTAGTTEYANTVGPYGTTPLFLAVGCSH
SPRMIRLLVDAGADPTLPVLMANPRGGDGVFHNTPLALAKYLWLEKKIAD
GTEVTDEQKRMLEGTRPFFTCVEAVHAVSWLWANDAPSSARPVKGTSTTR
TACGNWSLMGSFMKRGGGARRSKLAAIFRYSAKPSSIKFAHSWRYSANPS
S
back to top

mRNA from alignment at Ecto-sp13_S_contig8749:2862..4451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8749.20222.1 ID=mRNA_Ecto-sp13_S_contig8749.20222.1|Name=mRNA_Ecto-sp13_S_contig8749.20222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8749:2862..4451- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCGTATGGGGGACACGTGGACGCAATCAGGAAACTCCGTAGGGC AAAAGCTAAGCCTTGCTTGGCTGCGCGGGTTCCAGACAGCAACAACAACG CAGCAAACGTGCCATTAGCTGTAGCGGCCCTCCATGGGTACTCGGAAGTG GTACAAGATTTCATCAACGAGGTTGGGATCGAAGGCTGTGGAGGTGCACG TGGCGGCGAACAAGCTCGTGCTGTTGCCACCCGGGAGCAGCATATGGACG TCATGCGCGCGTTGACGAACGCAGGCGTCATTGACACCGGAGAAGCGATC CTCTCCGCCGCCAGATGCGATCGTGAGAGGGCCGCGATGCACCTCCTACA TCACCACGAGGGGCGGAACACAGCCGGCACAACGGAATACGCGAATACCG TCGGCCCATACGGCACAACGCCTTTGTTCCTAGCTGTTGGTTGTTCACAT TCTCCCCGAATGATACGATTGCTTGTCGATGCCGGTGCAGACCCAACACT ACCCGTTCTAATGGCAAACCCTCGTGGGGGGGATGGGGTTTTCCACAACA CGCCGCTGGCTCTAGCGAAGTATCTGTGGCTCGAAAAAAAGATCGCCGAC GGGACGGAAGTCACTGATGAGCAGAAGCGCATGCTTGAGGGCACCCGTCC TTTTTTCACGTGTGTGGAGGCAGTCCATGCCGTGTCTTGGTTGTGGGCCA ACGATGCTCCATCCAGCGCCCGCCCTGTCAAGGGCACCAGCACGACCCGG ACTGCCTGTGGAAATTGGTCTTTGATGGGGTCGTTCATGAAGCGGGGGGG CGGAGCCCGCCGTTCGAAATTGGCGGCCATTTTTAGGTGTAGTGCGGCGC ATGCGGTGAAGGTTGAGGGAGTCATGAAGGTCGGTCTCATCTCCCCAGCC GTTACATAGTTATTCCCTCTACTGTTGGCTGCGGCCACTGCTGTTGCGGC TGTAGCTTGGAGTAGGGAGGGCTGCGCTGCCTCGTCGCTAATAAGGAGTT CACGTAGTCCCGCTGGCCTGGTACCCTTCGGTCGGACCTGCGTACCACTC CTCCGCTCTTGTAAGATGGTAGGCGGGAGGGTCCCGTAGACACAGATACT TCATTTGCGGGAGGGGCGCGCGCGCTCATGTCACAGTACACAATGCCGCC TGGCCGGCGTCTTCCCAAACGCTTTGCCGTCTCCTCGCCGAGCTACCCTT TCGTTGCGCGTGCCATATATCGAGGCGACTCCTCCTGTGCGTTAGCTTAG TGATGGGTTGATCGTAGGCCTGTCGTATCGGTGCTTGCAGGAGTGGTGCC GATTCGCACGCGCCATCCGGCCCTTTGAAAATCGAATCCGGGTGATTTTT TCCAGTTCAAAGCGCGGCGCCACACCTCTTGAAGAGCAAGAAATATTTCG TTGTTCCGCTTTTCGGCCTGTTCGGAATCGGAACTTGTTCCCCACGACGT TTCCGAGACGGTCTGTTCGCTCACGCAACTCTACGTCAACTTTGCTGTCC GATCAATTGCCGCACTTCTGCAGGTATTCCGCGAAGCCTTCATCGATCAA ATTCGCGCACAGCTGGCGGTATTCCGCGAATCCTTCATCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8749:2862..4451-

>mRNA_Ecto-sp13_S_contig8749.20222.1 ID=mRNA_Ecto-sp13_S_contig8749.20222.1|Name=mRNA_Ecto-sp13_S_contig8749.20222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8749:2862..4451- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCGTATGGGGGACACGTGGACGCAATCAGGAAACTCCGTAGGGC
AAAAGCTAAGCCTTGCTTGGCTGCGCGGGTTCCAGACAGCAACAACAACG
CAGCAAACGTGCCATTAGCTGTAGCGGCCCTCCATGGGTACTCGGAAGTG
GTACAAGATTTCATCAACGAGGTTGGGATCGAAGGCTGTGGAGGTGCACG
TGGCGGCGAACAAGCTCGTGCTGTTGCCACCCGGGAGCAGCATATGGACG
TCATGCGCGCGTTGACGAACGCAGGCGTCATTGACACCGGAGAAGCGATC
CTCTCCGCCGCCAGATGCGATCGTGAGAGGGCCGCGATGCACCTCCTACA
TCACCACGAGGGGCGGAACACAGCCGGCACAACGGAATACGCGAATACCG
TCGGCCCATACGGCACAACGCCTTTGTTCCTAGCTGTTGGTTGTTCACAT
TCTCCCCGAATGATACGATTGCTTGTCGATGCCGGTGCAGACCCAACACT
ACCCGTTCTAATGGCAAACCCTCGTGGGGGGGATGGGGTTTTCCACAACA
CGCCGCTGGCTCTAGCGAAGTATCTGTGGCTCGAAAAAAAGATCGCCGAC
GGGACGGAAGTCACTGATGAGCAGAAGCGCATGCTTGAGGGCACCCGTCC
TTTTTTCACGTGTGTGGAGGCAGTCCATGCCGTGTCTTGGTTGTGGGCCA
ACGATGCTCCATCCAGCGCCCGCCCTGTCAAGGGCACCAGCACGACCCGG
ACTGCCTGTGGAAATTGGTCTTTGATGGGGTCGTTCATGAAGCGGGGGGG
CGGAGCCCGCCGTTCGAAATTGGCGGCCATTTTTAGGTATTCCGCGAAGC
CTTCATCGATCAAATTCGCGCACAGCTGGCGGTATTCCGCGAATCCTTCA
TCG
back to top