mRNA_Ecto-sp13_S_contig12436.2022.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12436.2022.1
Unique NamemRNA_Ecto-sp13_S_contig12436.2022.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: D8LQV8_ECTSI (Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQV8_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 8.740e-40
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            +VFTGNRPSLSLLFPKLDAFSCGQLLA YEHRTAVQGFVWGLNSFDQWGVELGK LA +VR  LSTAR +GGDVSEGFN
Sbjct:  463 KVFTGNRPSLSLLFPKLDAFSCGQLLAIYEHRTAVQGFVWGLNSFDQWGVELGKKLATKVRTALSTARTSGGDVSEGFN 541
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: G6PI3_CLALE (Glucose-6-phosphate isomerase, cytosolic 2B (Fragment) n=1 Tax=Clarkia lewisii TaxID=3936 RepID=G6PI3_CLALE)

HSP 1 Score: 122 bits (307), Expect = 2.500e-32
Identity = 58/79 (73.42%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            + FTGNRPSLS+L P LDA+  GQLLA YEHR AVQGFVWG+NSFDQWGVELGKSLA QVRK L  +R+ G  V EGFN
Sbjct:  211 KTFTGNRPSLSILLPTLDAYRIGQLLAIYEHRVAVQGFVWGINSFDQWGVELGKSLATQVRKQLHASRVKGEPVEEGFN 289
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: Q70SJ9_9MYRT (Glucose-6-phosphate isomerase (Fragment) n=2 Tax=Lopezia grandiflora TaxID=225335 RepID=Q70SJ9_9MYRT)

HSP 1 Score: 119 bits (297), Expect = 1.120e-31
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            ++FTGNRPSLS+L P LDA+  GQLLA YEHR AVQGF+WG+NSFDQWGVELGKSLA QVRK L  +R+  G+  EGFN
Sbjct:  125 KIFTGNRPSLSILLPTLDAYRIGQLLAIYEHRVAVQGFIWGINSFDQWGVELGKSLATQVRKQLHASRV-NGEAVEGFN 202
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: Q9SMJ0_9MYRT (Glucose-6-phosphate isomerase (Fragment) n=2 Tax=Myrtales TaxID=41944 RepID=Q9SMJ0_9MYRT)

HSP 1 Score: 118 bits (296), Expect = 2.940e-31
Identity = 58/79 (73.42%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            + FTGNRPSLS+L P LDA+  GQLLA YEHR AVQGFVWG+NSFDQWGVELGKSLA QVRK L  +R+ G  V EGFN
Sbjct:  167 KTFTGNRPSLSILLPTLDAYRIGQLLAIYEHRVAVQGFVWGINSFDQWGVELGKSLATQVRKQLHASRVKGETV-EGFN 244
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: A0A822XRU1_NELNU (Glucose-6-phosphate isomerase n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XRU1_NELNU)

HSP 1 Score: 115 bits (288), Expect = 5.160e-31
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            + F+GNRPSLSLL P L+A++ GQLLA YEHR AV+GF+WG+NSFDQWGVELGKSLA+QVRK L+ +R  G  V EGFN
Sbjct:   64 KTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLASQVRKQLNASRTKGEPV-EGFN 141
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: X0Z6Q1_9ZZZZ (Glucose-6-phosphate isomerase n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0Z6Q1_9ZZZZ)

HSP 1 Score: 113 bits (283), Expect = 8.490e-31
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            +VF GNRPS S+L   LDAF+ GQLLA YEHRTAVQGF+WG+NSFDQWGVELGK LA QVR  LS++R +G  V +GFN
Sbjct:   33 KVFAGNRPSSSILMTGLDAFAVGQLLAIYEHRTAVQGFIWGINSFDQWGVELGKMLAKQVRTQLSSSRKSGAHV-QGFN 110
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: A0A445FB21_GLYSO (Glucose-6-phosphate isomerase n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FB21_GLYSO)

HSP 1 Score: 114 bits (286), Expect = 1.070e-30
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            + F+GNRPSLSLL P L+A++ GQLLA YEHR AV+GF+WG+NSFDQWGVELGKSLA+QVRK L+ +R  G  V +GFN
Sbjct:   65 KTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRVAVEGFIWGINSFDQWGVELGKSLASQVRKQLNASRTKGEPV-QGFN 142
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: A0A7S2PKV4_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKV4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.760e-30
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            +VFTGNRPS S+L  +LDAF+ GQLL  +EHRTAVQGF+WG+NSFDQWGVELGK LA QVR  L+ +R +G  V +GFN
Sbjct:   34 KVFTGNRPSSSMLMTRLDAFAIGQLLVIFEHRTAVQGFIWGINSFDQWGVELGKVLAKQVRSQLTASRKSGASV-QGFN 111
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: G6PI1_CLALE (Glucose-6-phosphate isomerase, cytosolic 1A n=85 Tax=Onagreae TaxID=1585432 RepID=G6PI1_CLALE)

HSP 1 Score: 121 bits (303), Expect = 2.010e-30
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            + FTGNRPS+S+L P LDA+  GQLLA YEHR AVQGFVWG+NSFDQWGVELGKSLA QVRK L  +R+ G  V EGFN
Sbjct:  463 KTFTGNRPSISILLPTLDAYRIGQLLAIYEHRVAVQGFVWGINSFDQWGVELGKSLATQVRKQLHGSRVKGEPVEEGFN 541
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BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Match: A0A8K1FFQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFQ4_PYTOL)

HSP 1 Score: 120 bits (300), Expect = 5.040e-30
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGVELGKSLANQVRKTLSTARMAGGDVSEGFN 237
            ++F GNRPS+SLLFPKLDAF+CGQLLA YEHRT VQG +WGLNSFDQWGVELGK LA QVR  L  +R +G  + +GFN
Sbjct:  468 KLFPGNRPSISLLFPKLDAFTCGQLLALYEHRTVVQGAIWGLNSFDQWGVELGKVLAKQVRNQLQASRTSGAPI-QGFN 545
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12436.2022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQV8_ECTSI8.740e-4088.61Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus T... [more]
G6PI3_CLALE2.500e-3273.42Glucose-6-phosphate isomerase, cytosolic 2B (Fragm... [more]
Q70SJ9_9MYRT1.120e-3170.89Glucose-6-phosphate isomerase (Fragment) n=2 Tax=L... [more]
Q9SMJ0_9MYRT2.940e-3173.42Glucose-6-phosphate isomerase (Fragment) n=2 Tax=M... [more]
A0A822XRU1_NELNU5.160e-3169.62Glucose-6-phosphate isomerase n=1 Tax=Nelumbo nuci... [more]
X0Z6Q1_9ZZZZ8.490e-3169.62Glucose-6-phosphate isomerase n=1 Tax=marine sedim... [more]
A0A445FB21_GLYSO1.070e-3068.35Glucose-6-phosphate isomerase n=1 Tax=Glycine soja... [more]
A0A7S2PKV4_9STRA1.760e-3067.09Glucose-6-phosphate isomerase n=1 Tax=Leptocylindr... [more]
G6PI1_CLALE2.010e-3072.15Glucose-6-phosphate isomerase, cytosolic 1A n=85 T... [more]
A0A8K1FFQ4_PYTOL5.040e-3070.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12436contigEcto-sp13_S_contig12436:3775..4950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score148.3
Seed ortholog evalue1.5e-33
Seed eggNOG ortholog2880.D8LQV8
Preferred namePGI
Model size237
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
Hectar predicted targeting categoryother localisation
GOsGO:0002376,GO:0003674,GO:0003824,GO:0004347,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009605,GO:0009607,GO:0009620,GO:0009814,GO:0009817,GO:0009987,GO:0010035,GO:0010038,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042866,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046686,GO:0046700,GO:0046939,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0098542,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons2
EggNOG free text desc.glucose-6-phosphate isomerase activity
EggNOG OGsCOG0166@1,KOG2446@2759
EC5.3.1.9
Cds size237
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.313121-CDS-Ecto-sp13_S_contig12436:3774..38341681462662.313121-CDS-Ecto-sp13_S_contig12436:3774..3834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12436 3775..3834 -
1681462662.3242505-CDS-Ecto-sp13_S_contig12436:4773..49501681462662.3242505-CDS-Ecto-sp13_S_contig12436:4773..4950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12436 4774..4950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12436.2022.1prot_Ecto-sp13_S_contig12436.2022.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12436 3775..4950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12436.2022.1

>prot_Ecto-sp13_S_contig12436.2022.1 ID=prot_Ecto-sp13_S_contig12436.2022.1|Name=mRNA_Ecto-sp13_S_contig12436.2022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
QVFTGNRPSLSLLFPKLDAFSCGQLLATYEHRTAVQGFVWGLNSFDQWGV
ELGKSLANQVRKTLSTARMAGGDVSEGFN
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mRNA from alignment at Ecto-sp13_S_contig12436:3775..4950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12436.2022.1 ID=mRNA_Ecto-sp13_S_contig12436.2022.1|Name=mRNA_Ecto-sp13_S_contig12436.2022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1176bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12436:3775..4950- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCTTCACGGGGAACAGGCCTTCGCTATCCCTGCTGTTCCCGAAGCT
GGACGCCTTTTCGTGCGGGCAGCTGCTGGCCACCTACGAGCACCGAACGG
CCGTGCAAGGCTTCGTGTGGGGGCTGAACTCGTTCGACCAGTGGGGGGTT
GAGCTCGGAAAGAGCCTGGCGAATCAGGTTGGTTGCGGTTGGCGTGTTTT
CTTTTTTTTTATCTCTTATGTCACAGAGTAAAGAGTTCGGGATACATTGG
CAATGAATTCTTCGCGCTTGCGGTGCTCTGGTCATAGAGGCCGGAGTCCG
CGATGAGTTGAGATAGCGATGAACCCTCAGCGTTTGCTGGACGAACACTG
CCTGCGTTTCTACGATTCCTGCTTGTTCTTTTCTTCACAGGGTACAGGCA
GAAGTCCGCCCTACGCAGGATGGGTATTTGCCAGGCCGATTCATCCGCCC
GCCCGGCCCTGCAGGAGGAACTCGTCCGTTTTTAAAGCACTCAACAACTT
GATTTCATGTGCCAAGATATTTCACGTAACCTCTCGAGGAACCACGACTG
CTGCATGTTTTTTTTCCACCACGAAGATGATTTCTTCATGTCCCTTAGTG
TTGCGATGCTGCAATATATGGCTCCAGGGGGGTACCGTAGCACCGGCAGT
ATTCGCGGATTGCTTGTTGGAAAAATAGTGTCCTATTTTTCGTGCGTTGA
AGCAAAAAAATGGTGGAAGTTTTAGTCAACTGCGTTTGACAGCTGCACAA
GTTTTCTTCCACAAGATGAGGAACAAGCGCGGGTTGACAATGATTGAATT
CGCCCACCCAAGTCACCATATACGCCACCGAGGGGTAGCGATGTACGGTA
GAATTTTCAAGTCGGGCCAAGCAGCTAGGTACGTGATACGAACATATTGT
CCCTAAACCAATACCTGTGGTCCAGTTTCGTGGTGCGTGAAAGTTATGGG
TCGTTTCCTCGTAAAACTATCCGGAAAAAGACTGAGTGGTTCGACGAAGT
CACAGGCCCGCCTTTCCTATCCTGTGCCTCACACAACGTCTCCCCCCCCC
CCCCCTTGCTGCCTTCTTATTTTGTCCTTCTGTACGACTGGAAAAAATAA
TAATGTGGCGGCGAAGGTGCGCAAGACGCTGTCCACCGCCCGTATGGCCG
GAGGAGACGTGAGCGAGGGCTTCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12436:3775..4950-

>mRNA_Ecto-sp13_S_contig12436.2022.1 ID=mRNA_Ecto-sp13_S_contig12436.2022.1|Name=mRNA_Ecto-sp13_S_contig12436.2022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12436:3775..4950- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCTTCACGGGGAACAGGCCTTCGCTATCCCTGCTGTTCCCGAAGCT
GGACGCCTTTTCGTGCGGGCAGCTGCTGGCCACCTACGAGCACCGAACGG
CCGTGCAAGGCTTCGTGTGGGGGCTGAACTCGTTCGACCAGTGGGGGGTT
GAGCTCGGAAAGAGCCTGGCGAATCAGGTGCGCAAGACGCTGTCCACCGC
CCGTATGGCCGGAGGAGACGTGAGCGAGGGCTTCAAC
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