mRNA_Ecto-sp13_S_contig8742.20211.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8742.20211.1
Unique NamemRNA_Ecto-sp13_S_contig8742.20211.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8742.20211.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 8.840e-34
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 2 
Query:   20 MGALVALRRTACLAFACASLWLPERMEVAAETAAGSAARTLIDGTNSNIHHLDLLLQRRYDASTTTAQPPWFDGFGGRDG 259
            M A V L+R ACLAFACASLWLP  +EVAAETAAG AARTLIDGT+SNI+HLDLL+Q+ YDASTTTAQPPWFDGFGGRDG
Sbjct:    1 MEAPVVLQRAACLAFACASLWLPACLEVAAETAAGGAARTLIDGTDSNIYHLDLLVQQPYDASTTTAQPPWFDGFGGRDG 80
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BLAST of mRNA_Ecto-sp13_S_contig8742.20211.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.140e-31
Identity = 63/80 (78.75%), Postives = 68/80 (85.00%), Query Frame = 2 
Query:   20 MGALVALRRTACLAFACASLWLPERMEVAAETAAGSAARTLIDGTNSNIHHLDLLLQRRYDASTTTAQPPWFDGFGGRDG 259
            M ALVALRRTACL  A ASLWLP  +EV AE A G AARTLIDGT+S+IHHLDLL+Q+ YDAS TTAQPPWFDGFGGRDG
Sbjct:    1 MEALVALRRTACLGLAYASLWLPTSIEVEAEAAVGGAARTLIDGTDSSIHHLDLLVQQPYDASPTTAQPPWFDGFGGRDG 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8742.20211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSI2_ECTSI8.840e-3482.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ1_9PHAE3.140e-3178.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8742contigEcto-sp13_S_contig8742:5707..5965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size259
Hectar predicted targeting categorysignal peptide
Exons1
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.9128277-UTR-Ecto-sp13_S_contig8742:5706..57251681464146.9128277-UTR-Ecto-sp13_S_contig8742:5706..5725Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8742 5707..5725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.9226387-CDS-Ecto-sp13_S_contig8742:5725..59651681464146.9226387-CDS-Ecto-sp13_S_contig8742:5725..5965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8742 5726..5965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8742.20211.1prot_Ecto-sp13_S_contig8742.20211.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8742 5726..5965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8742.20211.1

>prot_Ecto-sp13_S_contig8742.20211.1 ID=prot_Ecto-sp13_S_contig8742.20211.1|Name=mRNA_Ecto-sp13_S_contig8742.20211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MGALVALRRTACLAFACASLWLPERMEVAAETAAGSAARTLIDGTNSNIH
HLDLLLQRRYDASTTTAQPPWFDGFGGRDG
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mRNA from alignment at Ecto-sp13_S_contig8742:5707..5965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8742.20211.1 ID=mRNA_Ecto-sp13_S_contig8742.20211.1|Name=mRNA_Ecto-sp13_S_contig8742.20211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=259bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8742:5707..5965+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGGTACGGCCTCAACTATGGGAGCACTAGTGGCACTACGACGTACGG
CTTGTCTGGCGTTCGCCTGTGCTTCGTTGTGGCTGCCTGAAAGAATGGAG
GTGGCGGCAGAGACAGCAGCGGGTAGTGCCGCTCGAACCTTGATCGACGG
CACCAATTCAAATATTCACCACCTCGATCTGCTCCTACAGCGACGCTACG
ATGCGTCCACAACAACGGCTCAGCCGCCCTGGTTCGACGGGTTCGGCGGG
CGGGACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8742:5707..5965+

>mRNA_Ecto-sp13_S_contig8742.20211.1 ID=mRNA_Ecto-sp13_S_contig8742.20211.1|Name=mRNA_Ecto-sp13_S_contig8742.20211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8742:5707..5965+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGCACTAGTGGCACTACGACGTACGGCTTGTCTGGCGTTCGCCTG
TGCTTCGTTGTGGCTGCCTGAAAGAATGGAGGTGGCGGCAGAGACAGCAG
CGGGTAGTGCCGCTCGAACCTTGATCGACGGCACCAATTCAAATATTCAC
CACCTCGATCTGCTCCTACAGCGACGCTACGATGCGTCCACAACAACGGC
TCAGCCGCCCTGGTTCGACGGGTTCGGCGGGCGGGACGGG
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