prot_Ecto-sp13_S_contig8742.20211.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8742.20211.1
Unique Nameprot_Ecto-sp13_S_contig8742.20211.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length80
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8742.20211.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 9.420e-34
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0 
Query:    1 MGALVALRRTACLAFACASLWLPERMEVAAETAAGSAARTLIDGTNSNIHHLDLLLQRRYDASTTTAQPPWFDGFGGRDG 80
            M A V L+R ACLAFACASLWLP  +EVAAETAAG AARTLIDGT+SNI+HLDLL+Q+ YDASTTTAQPPWFDGFGGRDG
Sbjct:    1 MEAPVVLQRAACLAFACASLWLPACLEVAAETAAGGAARTLIDGTDSNIYHLDLLVQQPYDASTTTAQPPWFDGFGGRDG 80
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8742.20211.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.360e-31
Identity = 63/80 (78.75%), Postives = 68/80 (85.00%), Query Frame = 0 
Query:    1 MGALVALRRTACLAFACASLWLPERMEVAAETAAGSAARTLIDGTNSNIHHLDLLLQRRYDASTTTAQPPWFDGFGGRDG 80
            M ALVALRRTACL  A ASLWLP  +EV AE A G AARTLIDGT+S+IHHLDLL+Q+ YDAS TTAQPPWFDGFGGRDG
Sbjct:    1 MEALVALRRTACLGLAYASLWLPTSIEVEAEAAVGGAARTLIDGTDSSIHHLDLLVQQPYDASPTTAQPPWFDGFGGRDG 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8742.20211.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSI2_ECTSI9.420e-3482.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ1_9PHAE3.360e-3178.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..80
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.578

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8742contigEcto-sp13_S_contig8742:5726..5965 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8742.20211.1mRNA_Ecto-sp13_S_contig8742.20211.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8742 5707..5965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8742.20211.1 ID=prot_Ecto-sp13_S_contig8742.20211.1|Name=mRNA_Ecto-sp13_S_contig8742.20211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MGALVALRRTACLAFACASLWLPERMEVAAETAAGSAARTLIDGTNSNIH
HLDLLLQRRYDASTTTAQPPWFDGFGGRDG
back to top