mRNA_Ecto-sp13_S_contig1243.2021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1243.2021.1
Unique NamemRNA_Ecto-sp13_S_contig1243.2021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1243.2021.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 3.130e-59
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:    4 FVVMV-APKSPTNSLLLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLAVRNLGNKHDQAKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYMPGLVSTGGG 321
            FVVMV A KSPTNSLLLTNQQTGTVQPGESV+VSFSFHATS+GRWTHDLAVRNLGNKHDQAKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYMPGLVSTGGG
Sbjct: 2433 FVVMVVASKSPTNSLLLTNQQTGTVQPGESVEVSFSFHATSIGRWTHDLAVRNLGNKHDQAKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYMPGLVSTGGG 2539
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BLAST of mRNA_Ecto-sp13_S_contig1243.2021.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.670e-43
Identity = 83/93 (89.25%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:   40 SLLLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLAVRNLGNKHDQAKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYMPGLVSTGG 318
            SLLLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLA          AKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYMPGLVSTGG
Sbjct:  709 SLLLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLA----------AKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYMPGLVSTGG 791
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BLAST of mRNA_Ecto-sp13_S_contig1243.2021.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.120e-29
Identity = 67/135 (49.63%), Postives = 84/135 (62.22%), Query Frame = 1 
Query:    1 RFVVMVAPKSPTNSLLLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLAVRNLGNKHDQAKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYMPGLVSTGGGGRPRVGDRPAPSSAQRERPRAVPYVHAQ 405
            ++VVM+  K   N+L +T  QTGT+ P  S  V  S  A  VGRW HD+ VRNL NKHDQA VTV+ATVKP MYLHFPDLDP A GK +++QIG CY+P +  T      R  +   P   +  RP +V  V +Q
Sbjct:  504 KYVVMLVAKPAGNTLTVTEHQTGTLPPKGSQDVRLSLRAAVVGRWMHDIVVRNLANKHDQATVTVTATVKPAMYLHFPDLDPAALGKLQEIQIGNCYLPPVEPT------RAPEDRGPLVEEALRPLSVRNVSSQ 632
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BLAST of mRNA_Ecto-sp13_S_contig1243.2021.1 vs. uniprot
Match: G4YG66_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YG66_PHYSP)

HSP 1 Score: 55.1 bits (131), Expect = 1.620e-5
Identity = 28/84 (33.33%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:   46 LLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLAVRNL-GNKHDQAKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYM 294
            ++    TGTV  G  V  +F +  +  G+    + +RNL G++ D + +T+S  V   +Y+  P+LDP A G+ E L +G CY+
Sbjct: 1750 IIFENATGTVAAGSLVTAAFVYRGSIPGQHNEQIVLRNLSGDRLDTSVLTLSVRVTRPVYVRIPELDPQATGQLEVLDLGPCYV 1833
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BLAST of mRNA_Ecto-sp13_S_contig1243.2021.1 vs. uniprot
Match: A0A225WZ12_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZ12_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.430e-5
Identity = 28/84 (33.33%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:   46 LLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLAVRNL-GNKHDQAKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYM 294
            ++    TGTVQ G  V  +F +  +  G+    + +RNL G++ D + +T+S  +   +Y+  P+LDP A G+ E L +G CY+
Sbjct: 1750 MIFENATGTVQAGSFVIAAFVYKGSVPGQHNELIVLRNLSGDRLDTSVLTLSIRITRPVYVRIPELDPQATGQLEILNLGPCYV 1833
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1243.2021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LHH6_ECTSI3.130e-5996.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ8_9PHAE1.670e-4389.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYQ9_9STRA1.120e-2949.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
G4YG66_PHYSP1.620e-533.33Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A225WZ12_9STRA5.430e-533.33Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1243contigEcto-sp13_S_contig1243:9323..10405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score209.1
Seed ortholog evalue1.2e-51
Seed eggNOG ortholog2880.D8LHH6
Model size554
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs28MMI@1,2QU5A@2759
Cds size399
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.239982-UTR-Ecto-sp13_S_contig1243:9322..93341681462662.239982-UTR-Ecto-sp13_S_contig1243:9322..9334Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1243 9323..9334 +
1681462662.2864857-UTR-Ecto-sp13_S_contig1243:10262..104051681462662.2864857-UTR-Ecto-sp13_S_contig1243:10262..10405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1243 10263..10405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.25351-CDS-Ecto-sp13_S_contig1243:9334..95021681462662.25351-CDS-Ecto-sp13_S_contig1243:9334..9502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1243 9335..9502 +
1681462662.2692869-CDS-Ecto-sp13_S_contig1243:10022..101641681462662.2692869-CDS-Ecto-sp13_S_contig1243:10022..10164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1243 10023..10164 +
1681462662.2780695-CDS-Ecto-sp13_S_contig1243:10173..102621681462662.2780695-CDS-Ecto-sp13_S_contig1243:10173..10262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1243 10174..10262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1243.2021.1prot_Ecto-sp13_S_contig1243.2021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1243 9335..10262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1243.2021.1

>prot_Ecto-sp13_S_contig1243.2021.1 ID=prot_Ecto-sp13_S_contig1243.2021.1|Name=mRNA_Ecto-sp13_S_contig1243.2021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MVAPKSPTNSLLLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLAVRNL
GNKHDQAKVTVSATVKPRMYLHFPDLDPNAKGKPEKLQIGFCYMPGLVST
GGGGRPRVGDRPAPSSAQRERPRAVPYVHAQP*
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mRNA from alignment at Ecto-sp13_S_contig1243:9323..10405+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1243.2021.1 ID=mRNA_Ecto-sp13_S_contig1243.2021.1|Name=mRNA_Ecto-sp13_S_contig1243.2021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1243:9323..10405+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTTGTCGTGATGGTGGCCCCAAAGTCTCCCACGAACAGCCTGCTGCT
GACCAACCAGCAGACGGGCACCGTGCAGCCGGGAGAGTCCGTGCAAGTCT
CGTTCTCTTTCCACGCAACGTCGGTCGGGCGCTGGACGCACGACCTGGCC
GTCCGTAACCTTGGCAACAAGCACGATCAGGCACGTGGTTTTGCGCGGTA
TTGGTGGCGATTGTTTGCTGTTTTATTCTCCCAGTGCTCTTGTGTCGTGC
GTGTGGAGCGGTCGAGGCATGACCAGATGTTGAGTGGCTGGACTGGCTGG
CTTTGATGGCTTGTCATTTATGTGTATCCCACGTTGTAAATCAGCCTGTG
TTGCAGTACTGTGTAGCGATAGAGACGGAGAGAGCGAGAGGGTGAGAGAG
ACGCAGACAGACAGACAGGCAGGCAGATACTGACAGGCAGATACAGACAG
GCAGATACAGACAGGCAGATACAGACAGGCAGAGAAGAGAGGCTGTTTCC
TACCTGTCTTTCGTGTGATGGCAGTAGCGACGAGGAGCGCAGCTTGGTAG
GGTGGGATATACAGGCTCCAAAGAAAAACGCGAGGGAATGTTAATGTTCT
CCCCGCCGCCGTGCTTTAACACTATCCCCCGTCCCTGCTTCTCGTGCACG
TGCCTCGCCCCGCTTTCCTCATCTTGCGTGTCCGAACCCGAAACGTTCAG
GCAAAGGTGACAGTCTCGGCCACCGTCAAGCCGCGAATGTATCTACACTT
TCCGGACCTCGACCCCAACGCTAAGGGCAAGCCCGAAAAGCTCCAGATCG
GGTTCTGCTACATGCCCGGCCTGGTCTCGACCGGCGGCGGCGGCGGCGGA
GGCCGACCGCGAGTCGGAGATCGTCCGGCCCCTTCGAGTGCGCAACGTGA
GCGACCGCGCGCTGTACCTTACGTGCACGCCCAACCTTAGGAAGCAGTGC
TTCGTGTACTCGGAGATACCCTCGGCGGAGACCTCGTCTTCCTCTTCTTT
TTTGTTGTCCGAGAGCCAAGTTCCTAAAGAAGGAAGCGGACAAGTGAGTC
CGCCCGGTGGCGAGGATGGCGGAGGCGTCCCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1243:9323..10405+

>mRNA_Ecto-sp13_S_contig1243.2021.1 ID=mRNA_Ecto-sp13_S_contig1243.2021.1|Name=mRNA_Ecto-sp13_S_contig1243.2021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1243:9323..10405+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCCCCAAAGTCTCCCACGAACAGCCTGCTGCTGACCAACCAGCA
GACGGGCACCGTGCAGCCGGGAGAGTCCGTGCAAGTCTCGTTCTCTTTCC
ACGCAACGTCGGTCGGGCGCTGGACGCACGACCTGGCCGTCCGTAACCTT
GGCAACAAGCACGATCAGGCAAAGGTGACAGTCTCGGCCACCGTCAAGCC
GCGAATGTATCTACACTTTCCGGACCTCGACCCCAACGCTAAGGGCAAGC
CCGAAAAGCTCCAGATCGGGTTCTGCTACATGCCCGGCCTGGTCTCGACC
GGCGGCGGCGGCCGACCGCGAGTCGGAGATCGTCCGGCCCCTTCGAGTGC
GCAACGTGAGCGACCGCGCGCTGTACCTTACGTGCACGCCCAACCTTAG
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