mRNA_Ecto-sp13_S_contig8739.20205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8739.20205.1
Unique NamemRNA_Ecto-sp13_S_contig8739.20205.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8739.20205.1 vs. uniprot
Match: D8LEK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK8_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 2.130e-102
Identity = 149/157 (94.90%), Postives = 153/157 (97.45%), Query Frame = 1 
Query:    1 VYFFIWVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCVCLVLGVGSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVVLVLTFSMTLIGHFGDNHSSEDVARWVNTRIMGFISATVMCFL 471
            +YFFI VCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVC+CLVLG GSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVV+VLTFS TLIGHFGDNHSSEDVARWVNTRIMGFISATV+ FL
Sbjct:  133 LYFFILVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCMCLVLGAGSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVVIVLTFSTTLIGHFGDNHSSEDVARWVNTRIMGFISATVIFFL 289
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BLAST of mRNA_Ecto-sp13_S_contig8739.20205.1 vs. uniprot
Match: A0A6H5KHV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 8.860e-16
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 VYFFIWVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERN 120
            VYFFIWVCGSCCYGSRTIRL+VLFSTGTRR VPWLA  R 
Sbjct:  106 VYFFIWVCGSCCYGSRTIRLSVLFSTGTRRAVPWLAPVRG 145
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BLAST of mRNA_Ecto-sp13_S_contig8739.20205.1 vs. uniprot
Match: A0A6H5KGT8_9PHAE (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGT8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.890e-15
Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:    7 FFIWVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCVCLVLGVGSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVVLVLTFSMTL-IGHFGDNHSSEDVARWVNTRIMGFISATVM 462
            FF+    + CY SR IRLAV F    RR +P L SE+  + V L +GV SL  P+Y    V +  + +     +AGV  W  ++  Q   + L P+VW  DD+F+ISREL V++VL    ++ +  F +   + ++  ++N   M  ++ +V+
Sbjct:   65 FFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKITVPNEDYRD----HQAGVK-WLCTLVLQITQICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKLFIEEELTGEIRNFINPPNMQLLTISVL 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8739.20205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEK8_ECTSI2.130e-10294.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHV8_9PHAE8.860e-1687.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGT8_9PHAE4.890e-1533.33RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8739contigEcto-sp13_S_contig8739:1679..5533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size477
Hectar predicted targeting categorysignal anchor
Exons5
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.4564426-CDS-Ecto-sp13_S_contig8739:1678..17891681464146.4564426-CDS-Ecto-sp13_S_contig8739:1678..1789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8739 1679..1789 +
1681464146.4676137-CDS-Ecto-sp13_S_contig8739:2818..29191681464146.4676137-CDS-Ecto-sp13_S_contig8739:2818..2919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8739 2819..2919 +
1681464146.4779725-CDS-Ecto-sp13_S_contig8739:3549..36361681464146.4779725-CDS-Ecto-sp13_S_contig8739:3549..3636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8739 3550..3636 +
1681464146.4888966-CDS-Ecto-sp13_S_contig8739:4080..41511681464146.4888966-CDS-Ecto-sp13_S_contig8739:4080..4151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8739 4081..4151 +
1681464146.508877-CDS-Ecto-sp13_S_contig8739:5426..55331681464146.508877-CDS-Ecto-sp13_S_contig8739:5426..5533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8739 5427..5533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8739.20205.1prot_Ecto-sp13_S_contig8739.20205.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8739 1679..5533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8739.20205.1

>prot_Ecto-sp13_S_contig8739.20205.1 ID=prot_Ecto-sp13_S_contig8739.20205.1|Name=mRNA_Ecto-sp13_S_contig8739.20205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
VYFFIWVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCVCLVLGV
GSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVW
KTDDIFNISRELRVVLVLTFSMTLIGHFGDNHSSEDVARWVNTRIMGFIS
ATVMCFLR*
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mRNA from alignment at Ecto-sp13_S_contig8739:1679..5533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8739.20205.1 ID=mRNA_Ecto-sp13_S_contig8739.20205.1|Name=mRNA_Ecto-sp13_S_contig8739.20205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8739:1679..5533+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTACTTCTTTATCTGGGTCTGCGGTTCGTGCTGCTACGGCAGTCGGAC
GATTCGACTGGCCGTCCTGTTCAGCACGGGCACGAGGAGAGTCGTGCCGT
GGCTAGCCTCGGTAAGGGGGGCGGGTCAACGCGACCACGAGCTTAAATGT
TGAGCCTGGACAGGCGCGTCGTTTGGACGTTGTTGGGGCGCCACCTACCT
GTGGCAGCAGCGCTACCAGAGTTATTGCTATTGTTGAAAGCGAATTGAAA
CACGGAAAGTGAAACGAGGCGACCCGTCCCTCTTCGTTGGCGTGATGACT
TGGACCTACATGTAATAGGTGTGAGGTCAACCTGTTGCCAAAAAATGCAA
GCATTCCGAACACACGGGTCGTTTCTTCTCAAAATGAGGCGCATGAGGCC
TATTTGGAGCGCGATCACGGCACAGTACCCGTCGCCAGGCAGACTCGATG
TGGGTACGGGAGCTACACCTATACACACAGCCGTAGCACAGCCGCTGGGG
TGGCAGCGAGAAAACCTTTGCGCCGTGACCGTGGGGGCACATTGCGGACA
CGGACCAAGTGCGGAACGAAGTACCTTCGCATCTGACACAGAGCTGTGCC
GAACGAAATGCCTCCAAATCCACTACATTGGGCAAGATCTACTCTTTTTC
AATGTAACCGTGCGGAAGGCGGCATTTGCGATCCAGAGCGGAGATAGGTG
AAATCGTTGTAGGTGCGTGTGTGCGAGGGCCCAAAACCAACGGCACATTC
TTTCTGTCTCTGTCTGTCTGTCTGTCTGTGTGTGTGTGTCTCCCTCTCTC
TCTTTCTCTCCTTCTCCGAGCTTGGAGAAATGACTTTCGGCTCTGTACGA
GCATCCAACAGCCAAGGCAAGGTTCTCCCCCCTCCCCCACCCCCTTGACC
CAACCAAGAACATTCCACCCCGTACCCCCCCCAAACACAAGGATGATCAC
TAGCTTCTGGCTCATCCTTGTGAAACGTAACCTGGGACGCCGACGAAAAC
CCGGCGTATCGCGGCGTCCCGACACCGATCGTAGGGACGCGAGGTCACTG
CTCTAACGGCTACGGCATGCGTTTGCATGAGTATACTCACCACCCATGGG
TACGGTCGTTGCGCTTCCATCCCTCGCGTTTCTCTCGCAGGAACGAAACC
ACGTGTGTGTGTGCCTGGTTCTCGGAGTCGGCTCGCTCGGGTTTCCTCTG
TACGTCATGTACGACGTTGGGGACGGGCCCTTCGCCGAGCTGTAAGTATC
CTCAGACGTCTGGGCGACAGTTCTTGTATGTGGTGGTTGACCTGGCTTCG
CTTGTTCTTCTTCGCGTCTGGGGGGCTTTAGTTGTCTCCATTCTGAGGCG
AGGGAGGAATTTGTTGCCTCCCCTGTCGGATAGCTATCGAATTGAGTTTG
CACGATGCTGCCCTGTCCCGCTCCCCTTCTGTCGAGACCGCGCATGCTTT
GCCGATATTTATACAATCGCACTTACTTGCGACTCGCTCGCCTGGCCGTG
CGGTAGCCCCCAAGAGGGCGATTTGTTTCTGCAAAGTATTTCATAACGGC
CGCGTTGCTCCACAAGAAACTCGGAAGTATTCCTTTTTTGTGGGAGGGAA
TGCTACTCATAAGAAGACGCCCAAGCGTCGTGTTTTCACCCGGCTGCACT
CGTCAAGATTACACGAAGAACTCCCCCGGGTTAAGAGGAACGGGCGGCAT
TTGCCTGGTTGATGCGCAGGTTTAAACCATCCGAAATATGCTATATTTGT
ATCTGTTTCGAGTGTTCTAGGTTTGTCACCGTCACGACCCTTTCTTCAAT
TGTACCGCACCGTAACAAGTCTTGCTGTCGCTGTCGCCGTGGCTTCTTGT
AATGATTCTCGTCCAATGGAGGCTCTTCGCCGAGCGTGCGGGGGTTTTGC
TGTGGCGCGTCTCGATAGCGTCCCAGGCAATGGTGCTGTCCCTCTACCCC
CTCGTGTGGTGAGGCTTTTGCGGTCGATCATCTTTGCCTGGTAGAGGTGT
TTGGTTACCACGCAGGCCGAAGAGTTTGCTATTTGCGTGTCAACTACCAC
ATCACTGGGCAATGACGCGGAAGTCGGTCATCATCGTCGTCGATTGGCCC
GTGAAACTTTTAACGAAACCACTTCTCACGTGCAGCAAGCAGGACATTAG
GCACCGTGCCTCGAGTCGGTCGTCGTTGTCGCCGCCGCCGATGCCGTTGA
TCGAGTACAAAGTTGATTCAAATTTCTTAGTACGTCCAAGTCGGGCGTCT
TACGCTCCCTCTCAGATGTCCGGAGCCTTTGCTTGGAATTCGACCGCCTT
TTTTGATGATCGCCTGGGTGGGAACACCCGGCGTCCTTGTGCGTCCGTTG
ATCGCTGAATAGCTACCTCTACGTGCTGTCGCCTAACCACGTCATGCTGC
AGGAAAACGGACGACATTTTCAATATCTCTCGAGAGCTTCGTGTCGTCCT
CGTCTTGACCTTCAGTATGACACGTGAGTAACTACGAGAGATAAATAGAT
GGAAGTTTCAAGTCTTGGGACCTTCCATTTGACACGCGAGTGACAGAAAG
AGAAATGTCGACCGGAATAGGCTTCCTCTTCATTGTGATAAGTGAGCAAC
AGCAATTCGTCGGTCGTCCGGCAGCCGACACTGATATGACATCATTGCTC
ATGATATCCCACCAGGAACCACGCATCGAGCGCGCTTTATCATGGAGTAA
GGTCCGAGAGGGCGTGTTTCGTTGCAATGCGGTTAAAATGACGTAGTGCC
CGCTTCATCGATCGGCTGACAGCCCCGCCACGGTCTGGGGAACGTTTCTT
CCGTTCTTGCTTCGCTTGTGCCGTCAGATGTACTGTATTAGTACGATGAG
CTCGTCTGCAATTGTTGAAAATAGCGCCGTGGTTATGCTTTTCGTGTGTA
CGCACATGACAGAGAAAGTGTTTGTGTTTAGGTTGTTGTTGTTGTTGTTG
TTGTTGCTGTTGTTACTGTTCTCGTTGTTGTTCCTGTTGTTGCACTTCAC
TCGCCAGAAAGCTCACAGAGGGTTTTTGGCGTGCGGGCTACTTACGGGGT
GTGAAATTAGGGCACGGGTACGTTTACGTATTCAGACCAGAGTGGGACGC
GAAATTCACTCCTGTGGTGCGAATACTAATAGTATCCCGGCGCAGCATGA
ACGTTGTTACGACCAAGGTTCCACGAGGTAGATCTTGATGATTGGGCGCC
ACTTCTTTGCTCCAGGCAGACGGCAGACGTTTCGATGCACATGTCACTCA
GATGCATTGTTCTTTGTCGAGCTTTGCTTGTGTTCGGACGGCAACGAACT
CGTCTCCTTCACTCGAAGTTCGAGAGGAGTGCATAGCATTTGATGTTGTT
CGATCAATCCTTTGCATATGTTGGTAAGGAGTCAAGTCTGCCACGAATCA
AAGGCTAGTAGAAGAAGAACGTGAGACTCTCGTGATTTCATATGCACCAA
AGTACCTCGTGTGCCTACCCATGACCGCTAAAGAGCGCGGATCCTTCTCC
AAGTTAGTTGATCTTGTTGGAGATTTTGGCATTCGGCGGAGGCACCATTT
TTCCGCGATGGAAAGTCCCCCAAGACTACAAAACATGACAGTCTCTCACC
TAAATCGGAGCGACTTACCCCAACAGACCCATGCGGCAGGTCTCCTTTCC
GTGGCACTTGCTGCTGTCTCAGCCGTCTCTCGTAGCTTTCCCTTGTCCGT
CTGGTGATCATGCAATACACCCTACCCCCCACTTGCATCTTGTGGCAGTC
ATCGGGCATTTCGGGGACAACCATTCTAGCGAGGATGTCGCCCGTTGGGT
CAACACGAGAATCATGGGCTTCATCTCGGCGACCGTCATGTGTTTCTTGA
GGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8739:1679..5533+

>mRNA_Ecto-sp13_S_contig8739.20205.1 ID=mRNA_Ecto-sp13_S_contig8739.20205.1|Name=mRNA_Ecto-sp13_S_contig8739.20205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8739:1679..5533+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTACTTCTTTATCTGGGTCTGCGGTTCGTGCTGCTACGGCAGTCGGAC
GATTCGACTGGCCGTCCTGTTCAGCACGGGCACGAGGAGAGTCGTGCCGT
GGCTAGCCTCGGAACGAAACCACGTGTGTGTGTGCCTGGTTCTCGGAGTC
GGCTCGCTCGGGTTTCCTCTGTACGTCATGTACGACGTTGGGGACGGGCC
CTTCGCCGAGCTGCTCTTCGCCGAGCGTGCGGGGGTTTTGCTGTGGCGCG
TCTCGATAGCGTCCCAGGCAATGGTGCTGTCCCTCTACCCCCTCGTGTGG
AAAACGGACGACATTTTCAATATCTCTCGAGAGCTTCGTGTCGTCCTCGT
CTTGACCTTCAGTATGACACTCATCGGGCATTTCGGGGACAACCATTCTA
GCGAGGATGTCGCCCGTTGGGTCAACACGAGAATCATGGGCTTCATCTCG
GCGACCGTCATGTGTTTCTTGAGGTAA
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