prot_Ecto-sp13_S_contig8739.20205.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8739.20205.1
Unique Nameprot_Ecto-sp13_S_contig8739.20205.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length159
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8739.20205.1 vs. uniprot
Match: D8LEK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK8_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 2.130e-102
Identity = 149/157 (94.90%), Postives = 153/157 (97.45%), Query Frame = 0 
Query:    1 VYFFIWVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCVCLVLGVGSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVVLVLTFSMTLIGHFGDNHSSEDVARWVNTRIMGFISATVMCFL 157
            +YFFI VCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVC+CLVLG GSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVV+VLTFS TLIGHFGDNHSSEDVARWVNTRIMGFISATV+ FL
Sbjct:  133 LYFFILVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCMCLVLGAGSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVVIVLTFSTTLIGHFGDNHSSEDVARWVNTRIMGFISATVIFFL 289
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BLAST of mRNA_Ecto-sp13_S_contig8739.20205.1 vs. uniprot
Match: A0A6H5KHV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 8.860e-16
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0 
Query:    1 VYFFIWVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERN 40
            VYFFIWVCGSCCYGSRTIRL+VLFSTGTRR VPWLA  R 
Sbjct:  106 VYFFIWVCGSCCYGSRTIRLSVLFSTGTRRAVPWLAPVRG 145
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BLAST of mRNA_Ecto-sp13_S_contig8739.20205.1 vs. uniprot
Match: A0A6H5KGT8_9PHAE (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGT8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.890e-15
Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 0 
Query:    3 FFIWVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCVCLVLGVGSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVVLVLTFSMTL-IGHFGDNHSSEDVARWVNTRIMGFISATVM 154
            FF+    + CY SR IRLAV F    RR +P L SE+  + V L +GV SL  P+Y    V +  + +     +AGV  W  ++  Q   + L P+VW  DD+F+ISREL V++VL    ++ +  F +   + ++  ++N   M  ++ +V+
Sbjct:   65 FFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKITVPNEDYRD----HQAGVK-WLCTLVLQITQICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKLFIEEELTGEIRNFINPPNMQLLTISVL 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8739.20205.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEK8_ECTSI2.130e-10294.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHV8_9PHAE8.860e-1687.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGT8_9PHAE4.890e-1533.33RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..100
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 62..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 112..129
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..158
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 101..111
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..41
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 141..157
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 130..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..61
NoneNo IPR availableTMHMMTMhelixcoord: 79..100
NoneNo IPR availableTMHMMTMhelixcoord: 42..64
NoneNo IPR availableTMHMMTMhelixcoord: 112..129
NoneNo IPR availableTMHMMTMhelixcoord: 140..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8739contigEcto-sp13_S_contig8739:1679..5533 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8739.20205.1mRNA_Ecto-sp13_S_contig8739.20205.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8739 1679..5533 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8739.20205.1 ID=prot_Ecto-sp13_S_contig8739.20205.1|Name=mRNA_Ecto-sp13_S_contig8739.20205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
VYFFIWVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCVCLVLGV
GSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVW
KTDDIFNISRELRVVLVLTFSMTLIGHFGDNHSSEDVARWVNTRIMGFIS
ATVMCFLR*
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