mRNA_Ecto-sp13_S_contig10172.202.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10172.202.1
Unique NamemRNA_Ecto-sp13_S_contig10172.202.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: D8LCE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE6_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 1.120e-105
Identity = 158/191 (82.72%), Postives = 167/191 (87.43%), Query Frame = 1
Query:    1 MRAWTLMLACVLPLVLAHGTEDDP-ITPEQDCCAAFLVEGEEGSLDAAGKYRLPAICRGVPSPVACPQLTFTNDGSIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKRGGCRAAGCVAAAVEGELTAQDSINV------DRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDK 552
            MRAWTL+LACVLPLVLAHGTED+P ITPE DCCAA LVEGEEGSLDAAGKYRLPAICRGVPSPV C  L FTND +++EEPAWLLAY SQADIRQHPSCSPVEWEQRCPPGATMLLS+KRGGC AAGCVAA      TAQ+S+NV      D AILRAVTGQVTARLRAEKP+LP SFYWHVRGLRRAFDK
Sbjct:    1 MRAWTLVLACVLPLVLAHGTEDNPTITPEGDCCAALLVEGEEGSLDAAGKYRLPAICRGVPSPVTCTPLGFTNDHNMVEEPAWLLAYRSQADIRQHPSCSPVEWEQRCPPGATMLLSKKRGGCPAAGCVAA------TAQESVNVGQDVGDDAAILRAVTGQVTARLRAEKPDLPRSFYWHVRGLRRAFDK 185          
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: D7G3D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D5_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.360e-52
Identity = 105/172 (61.05%), Postives = 128/172 (74.42%), Query Frame = 1
Query:    1 MRAWTLMLACVLPLVL--AHGTEDDPITPEQDCCAAFLVEGEEGSLDAAGKYRLPAICRGVPSP-VACPQLTFTNDG---SIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKRGGCRAAGCVAAAVEGELTAQDSINVDRAILRAVTGQVTARLRAEKPN 498
            MR+WTL+L C + LVL  AHG   DP T E+DCC A LVEGEEGSLDAAGKY LP ICRG P+P +ACPQL F +     + I EPA  LA++ Q+D+R   SCSP+EWEQRCPPGATMLLS+KRGGCRAAGCVAAA+EGELTAQ  I+VD    +  T ++T  +++  P+
Sbjct:    2 MRSWTLLLVCAVLLVLGQAHGKGRDP-TKEEDCCTALLVEGEEGSLDAAGKYVLPTICRGEPAPAMACPQLWFQSPAISDNDIGEPA-RLAFQQQSDLRADESCSPLEWEQRCPPGATMLLSKKRGGCRAAGCVAAAMEGELTAQ-LIDVDE---KRFTRKLTKAMKSSPPS 167          
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: A0A6H5KMQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ6_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.530e-51
Identity = 113/194 (58.25%), Postives = 130/194 (67.01%), Query Frame = 1
Query:    1 MRAWTLMLACVLPLVLAHGTE-DDPI--TPEQDCCAAFLVEGEEGSLDAAGKYRLPAICRGVPSPVACPQLTFT-----NDGSIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVEGELTAQDSINVDRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDKV 555
            MRAW L+L  VL    AHG   + P   TPE  CCAA LVEGE GSLDA GKYRLP  C G  + VACP+L F      NDGS+    +W LA+  QAD+R  PSCSP+EWE+RCPPGATMLL++KR GGCRAAGCVA  V GEL   +  N D  ILRAVT Q TA L+A KP +P SFY HV G +RA+ K 
Sbjct:    1 MRAWMLLLLSVLLTFGAHGMAINGPANATPEDKCCAALLVEGEAGSLDAFGKYRLPTPCGGELA-VACPKLGFNAATLHNDGSMTA--SW-LAFRQQADLRLAPSCSPMEWEKRCPPGATMLLAEKRRGGCRAAGCVA--VGGEL---NDDNDDNEILRAVTAQQTALLKAAKPAMPKSFYQHVAGRQRAYGKA 185          
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: D7G4D4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D4_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.210e-43
Identity = 98/177 (55.37%), Postives = 115/177 (64.97%), Query Frame = 1
Query:   49 AHG----TEDDPITPEQDCCAAFLVEGEEGSLDAAGKYRLPAICRGVPSPVACPQLTFT----NDGSIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVEGELTAQDSINVDRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDK 552
            AHG       + ITP+  CC+A LVEGE GSLD  GKYRLP  C G  + VACP+L F     NDGS+   P+W LA+  QAD+R  PSC  VEWE+RCPPGATMLL++KR GGCRAAGCVA  V GE         +  ILRAVT Q TA L+A KP  P +FY HV G +RA+ K
Sbjct:    7 AHGKGINAPANAITPQDKCCSALLVEGEAGSLDDFGKYRLPPPCGGELA-VACPRLGFNSAAMNDGSMT--PSW-LAFRQQADLRLAPSCPRVEWEKRCPPGATMLLAEKRRGGCRAAGCVA--VGGEPNDNKEEQDESEILRAVTAQQTALLQAAKPATPKTFYQHVVGQQRAYGK 177          
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: A0A6H5JIA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA9_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.090e-26
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 MRAWTLMLACVLPLVLAHGTEDDPI-TPEQDCCAAFLVEGEEGSLDAAGKYRLPAI 165
            MRAW+L+LACVLPLVLAHGTEDDPI TPE DCCAA LVEGEEGSLDAAGKYRLP I
Sbjct:    1 MRAWSLILACVLPLVLAHGTEDDPINTPEGDCCAALLVEGEEGSLDAAGKYRLPPI 56          
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: A0A6H5KGK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.970e-25
Identity = 69/150 (46.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query:  187 VACPQLTFTNDGSIIEEP---AWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVEGELT---------------------AQDSINVDRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDKVGG 561
            VACP+L F N  +I ++    +W LA++ Q+ +R   SC P EWE RCPPGATMLL +KR GGCRAAGC+AA   GEL                       Q++ + +  ILRAVT Q TA L+A KP LP +FY HV G +RA   V G
Sbjct:   12 VACPKLGF-NAAAIHDDAMTASW-LAFQQQSGLRAAESCPPTEWEDRCPPGATMLLVEKRRGGCRAAGCIAAG--GELNDVRDGSAFPLAVLVCYALVDHGQNNEDDEWEILRAVTAQQTALLQAAKPTLPKTFYQHVAGQQRACGXVSG 157          
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.120e-24
Identity = 68/135 (50.37%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  163 ICRGVPSPVACPQLTFT----NDGSIIEEPAWLLAYESQADIRQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVEGELTAQDSINVDRAILRAVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDK 552
            I  G  S VACP+L F     ND ++    +W LA++ Q+ +R   SC P EWE RCPPGA MLL++KR GGCRAAGCVA  V GEL   ++ + +  ILR VT Q TA L+A KP +P +FY HV G +RA+ K
Sbjct:    4 IYSGGESAVACPKLGFNAAAINDDAMTA--SW-LAFQQQSGLRAAESCPPAEWEDRCPPGAIMLLAEKRRGGCRAAGCVA--VGGELN-DNNKDDEWEILRVVTAQQTALLQAAKPTMPKTFYQHVAGQQRAYAK 132          
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Match: A0A6H5JU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU04_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.240e-13
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  187 VACPQLTFTNDGSIIEEP---AWLLAYESQADI---RQHPSCSPVEWEQRCPPGATMLLSQKR-GGCRAAGCVAAAVE 399
            VACP+L F N  +I ++    +W LA++ Q+ +   R   SC P EWE RCPPGATMLL++KR GGCRAAGC+AA  E
Sbjct:   12 VACPKLGF-NAAAIHDDAMTASW-LAFQQQSGLFGLRAAESCPPTEWEDRCPPGATMLLAEKRRGGCRAAGCIAAGGE 87          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10172.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LCE6_ECTSI1.120e-10582.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3D5_ECTSI2.360e-5261.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMQ6_9PHAE1.530e-5158.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4D4_ECTSI1.210e-4355.37Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JIA9_9PHAE4.090e-2689.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGK1_9PHAE2.970e-2546.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE6_ECTSI2.120e-2450.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU04_9PHAE5.240e-1353.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10172contigEcto-sp13_S_contig10172:467..2000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size678
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_004710.1
Cds size597
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.865553-UTR-Ecto-sp13_S_contig10172:466..5471681462512.865553-UTR-Ecto-sp13_S_contig10172:466..547Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10172 467..547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.8741376-CDS-Ecto-sp13_S_contig10172:547..7121681462512.8741376-CDS-Ecto-sp13_S_contig10172:547..712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10172 548..712 -
1681462512.8821673-CDS-Ecto-sp13_S_contig10172:1349..16141681462512.8821673-CDS-Ecto-sp13_S_contig10172:1349..1614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10172 1350..1614 -
1681462512.8911524-CDS-Ecto-sp13_S_contig10172:1833..20001681462512.8911524-CDS-Ecto-sp13_S_contig10172:1833..2000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10172 1834..2000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10172.202.1prot_Ecto-sp13_S_contig10172.202.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10172 548..2000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10172.202.1

>prot_Ecto-sp13_S_contig10172.202.1 ID=prot_Ecto-sp13_S_contig10172.202.1|Name=mRNA_Ecto-sp13_S_contig10172.202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
MRAWTLMLACVLPLVLAHGTEDDPITPEQDCCAAFLVEGEEGSLDAAGKY
RLPAICRGVPSPVACPQLTFTNDGSIIEEPAWLLAYESQADIRQHPSCSP
VEWEQRCPPGATMLLSQKRGGCRAAGCVAAAVEGELTAQDSINVDRAILR
AVTGQVTARLRAEKPNLPTSFYWHVRGLRRAFDKVGGKTKERERHFFF*
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mRNA from alignment at Ecto-sp13_S_contig10172:467..2000-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10172.202.1 ID=mRNA_Ecto-sp13_S_contig10172.202.1|Name=mRNA_Ecto-sp13_S_contig10172.202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10172:467..2000- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGCGTGGACGCTGATGCTGGCGTGTGTGCTGCCCCTGGTGCTCGC ACACGGCACGGAAGACGACCCCATCACCCCTGAACAAGACTGCTGCGCTG CTTTCCTTGTCGAGGGCGAGGAGGGCTCCCTCGACGCCGCCGGCAAATAC CGTCTGCCGGCCATTTGGTGAGTGGCAAAACATGCCCTCTCTCAGAAGGA CAGACCACCTGCCGCGTGATGAGTACTTCCTGCTCCTGGAGAGAGCGTTG CTGCGCTCGAACTTCAGCAGCACACAGTAGACCACTGTCTGGTGCGTGAC ATTGACAGTAGTATTTTCTACACTGACTGCCCTCTCTGCCGTCGTTTCCT GCGGATGGATGTCTGTCGTGTCACATGAATGTACAGCCGTGGAGTGCCTT CCCCCGTGGCCTGCCCACAATTGACGTTCACCAATGACGGCAGCATTATC GAAGAACCAGCTTGGCTTCTTGCCTATGAGAGCCAAGCCGACATTCGTCA ACACCCCTCCTGCTCGCCCGTGGAATGGGAACAGAGGTGCCCCCCCGGGG CGACGATGCTGCTCTCTCAGAAGAGGGGCGGGTGCCGGGCGGCTGGCTGC GTGGCTGCTGCTGTAGAGGGCGAGCTCACCGCCCAGGACTCGATCAACGT GGTGAGCCAAAGAGTTTTTGCAGCAAATCAGTTGTAATTCCAAGTCGTGC AAGTCGTGCGAGAATTTCTTCCCGTGCTTGTTTTTTTTTTCAGCAGGATT TGCTCTAGATTTTCTAAATACCGTTTGTTATATGTACAAAAGACTTGCAG ATCGCTGCGTACGTACGGCACCTGCTCATCATATGCATGGATAGGAGGAG CACAACAAAAGCCTCATTACCGGTTCGTTTGTCCGGTTAACCCGCTCGAG GTGTCCACAGCATCTACTCCTTTATTGTTTATTGCTTGGTGGGATGAGGT ACGACAGAGACATGTGGAGGATGTTCCGCCGATTGCCGGATTCATGCCCA GCAGGCGGGCAAATATTTTTCACCCGTGACCCAACCCTCAAAACTGTCCA ATCGGGAATTAATGTGAAATGATTGCACGTCATCAGTTGGACTGAACGGG TAAACGTGGTATGCATCGAGGTTGTCACCACACACGACACCCTCAATACT CTCCGATCAGGAAGTAATTGATTGCCGCCAGTTGAACTGAACGGACATAC ATCAAGGTTCTCCCAACACGTGACACGAATAAATGCTTTCTTTTCCGCTG TTGCTGTCTGGGTGCTGCTGGGGCAAGATGTCGCGGAGGACAGAGCAATC CTTAGGGCGGTCACCGGCCAAGTGACCGCCAGGCTTCGAGCCGAGAAGCC CAACCTTCCTACGTCTTTTTACTGGCACGTCCGGGGTCTCCGGCGTGCTT TCGACAAGGTGGGCGGAAAAACAAAAGAGAGAGAGCGCCATTTCTTTTTT TGAAAGATTAAGATTGTTCATTTTTGTTTGTCTCATCATGATGGGAGCGG AGGAAATGAAGATGAACGACAGGTTTTGTTTTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10172:467..2000-

>mRNA_Ecto-sp13_S_contig10172.202.1 ID=mRNA_Ecto-sp13_S_contig10172.202.1|Name=mRNA_Ecto-sp13_S_contig10172.202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10172:467..2000- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGCGTGGACGCTGATGCTGGCGTGTGTGCTGCCCCTGGTGCTCGC
ACACGGCACGGAAGACGACCCCATCACCCCTGAACAAGACTGCTGCGCTG
CTTTCCTTGTCGAGGGCGAGGAGGGCTCCCTCGACGCCGCCGGCAAATAC
CGTCTGCCGGCCATTTGCCGTGGAGTGCCTTCCCCCGTGGCCTGCCCACA
ATTGACGTTCACCAATGACGGCAGCATTATCGAAGAACCAGCTTGGCTTC
TTGCCTATGAGAGCCAAGCCGACATTCGTCAACACCCCTCCTGCTCGCCC
GTGGAATGGGAACAGAGGTGCCCCCCCGGGGCGACGATGCTGCTCTCTCA
GAAGAGGGGCGGGTGCCGGGCGGCTGGCTGCGTGGCTGCTGCTGTAGAGG
GCGAGCTCACCGCCCAGGACTCGATCAACGTGGACAGAGCAATCCTTAGG
GCGGTCACCGGCCAAGTGACCGCCAGGCTTCGAGCCGAGAAGCCCAACCT
TCCTACGTCTTTTTACTGGCACGTCCGGGGTCTCCGGCGTGCTTTCGACA
AGGTGGGCGGAAAAACAAAAGAGAGAGAGCGCCATTTCTTTTTTTGA
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