mRNA_Ecto-sp13_S_contig8730.20196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8730.20196.1
Unique NamemRNA_Ecto-sp13_S_contig8730.20196.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI)

HSP 1 Score: 514 bits (1323), Expect = 1.880e-169
Identity = 278/306 (90.85%), Postives = 283/306 (92.48%), Query Frame = 1
Query:    1 STVRTASGVSSGRSRDSSRIRADSEEEVRLEEGDLGGVPGKGETPTAGGDGDVGNVVASAVIGNGVITTPTADTNGAVAAGTWNEREPINTSVITKRSSSVSNDTSIDGNRRDVVQRGQRERGSFRGRRGGGXXRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSSPNQFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPPLQAGVAAA 918
            STVRTASGVSSGRSRD SRIRA+SEEE RLEEGDLGGV  K ET TAG   DV NVVASAV+GNGVITT TADTN AVAAGTWNEREPINTSV TK+SSSVSNDTSI GNRRDVVQRG RER  FRGRRGGG  RGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKD  RSSP+QFGTFC+ITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQ MMDSPPL AGVAAA
Sbjct:  227 STVRTASGVSSGRSRDPSRIRANSEEEARLEEGDLGGVLDKDETTTAG---DVSNVVASAVVGNGVITTSTADTNDAVAAGTWNEREPINTSVFTKQSSSVSNDTSIGGNRRDVVQRGPRERAFFRGRRGGGGGRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDAIRSSPSQFGTFCYITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQTMMDSPPLPAGVAAA 529          
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 5.930e-102
Identity = 201/305 (65.90%), Postives = 226/305 (74.10%), Query Frame = 1
Query:    7 VRTASGVSSGRSRDSSRIRADSEEEVRLEEGDLGGVPGKGETPTAG-GDGDVGNVVASAVIGNGVITTPTADTNGAVAAGTWNEREPINTSVITKRSSSVSNDTSIDGNRRDVVQRGQRERGSFRGRRGGGXXRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSSPNQFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPPLQAGVAAA 918
             R+ASG+S  R+  SSRI  DSE+EV  E+ +LGGVPG   T  AG G G  G V  SAV+G+GVITT +AD NGAVA   W  RE      I   S+SV   +S  G RRD VQRGQR RG         XX    +REEMEVW+FERL RTPLLA AFEDYSKRALCHESVLFL+EVSRYQ++DYATPT     + P QFGTFCFIT+TFIKAG+PEEVNI    +K ILELYQKGEE FE+VNEEERR++F R+YL VKSMLEANLLRRFLNTD+FKSVR QRENVQAMMDSPPL AGV AA
Sbjct:  251 TRSASGISPERAGGSSRIVDDSEDEVAFEDEELGGVPGFDTTAAAGVGGGSTGKVATSAVVGSGVITTSSADANGAVAPCPWKGREL----TIANGSTSVPKGSSSTGKRRDAVQRGQRGRGXXXXXXXXXXXXX-SDREEMEVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAAGTCPTQFGTFCFITDTFIKAGAPEEVNI----RKLILELYQKGEESFEEVNEEERRMVFKRSYLAVKSMLEANLLRRFLNTDQFKSVRKQRENVQAMMDSPPLPAGVVAA 546          
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 6.590e-101
Identity = 203/306 (66.34%), Postives = 231/306 (75.49%), Query Frame = 1
Query:    7 VRTASGVSSGRSRDSSRIRADSEEEVRLEEGDLGGVPGKGETPTAG-GDGDVGNVV-ASAVIGNGVITTPTADTNGAVAAGTWNEREPINTSVITKRSSSVSNDTSIDGNRRDVVQRGQRERGSFRGRRGGGXXRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSSPNQFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPPLQAGVAAA 918
             R+ASG+S  R+  SSRI  DS++EV  E+ +LGGVPG   T  AG G G  G V  +SAV+G+GVITT TAD N  VA  TW  RE      I   S+SV   +   G RRD VQRGQR RG         XX    +REEMEVW+FERL RTPLLA AFEDYSKRALCHESVLFL+EVSRYQ++DYATPT +   + P QFGTFC+IT+TFIKAG+PEEVNISD D+K ILELYQKGEE FE+VNEEERR++F R+YLEVKSMLEANLLRRFLNTD+FKSVR QRENVQAMMDSPPL AGVAAA
Sbjct:  322 TRSASGISPERAGRSSRIVDDSDDEVAFEDEELGGVPGMDTTAAAGVGGGSTGKVATSSAVVGSGVITTSTADAN-VVAPRTWKGREM----TIANGSTSVPKGSGSTGKRRDAVQRGQRGRGXXXXXXXXXXXXP-SDREEMEVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPT-NAAGTCPTQFGTFCYITDTFIKAGAPEEVNISDKDRKLILELYQKGEESFEEVNEEERRMVFKRSYLEVKSMLEANLLRRFLNTDQFKSVRKQRENVQAMMDSPPLPAGVAAA 620          
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: A0A6H5JE98_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 1.560e-97
Identity = 192/307 (62.54%), Postives = 225/307 (73.29%), Query Frame = 1
Query:    1 STVRTASGVSSGRSRDSSRIRADSEEEVRLEEGDLGGVPGKGETPTAGGDGDVGNVVASAVIGNGVITTPTADTNGAVAAGTWNEREPINTSVITKRSSSVSNDTSIDGNRRDVVQRGQRERGSFRGRRGGGXXRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSS-PNQFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPPLQAGVAAA 918
            ST R ASG SSG   +SS + ++ E+E  LEEG LG     G T T    G  G V ASA IG  V TT +AD NGAVA  TW +REP N+SV+T  +  VSND    GNR D V+RGQ E G  RGR GG   R R  ++++++W+FER+ RTPLLAVAFEDYSK+ALCHES LFL+EVSRYQ+ DYA  T+  + SS P QFGTFC+IT+TFIKAGSPEEVNISD ++K IL LY KGEE FEDVNEEERR+IF RAYL VK MLEANLL RFLNTDRFKSV MQ+E+ Q M+DSP LQAGVA +
Sbjct:  309 STARRASGFSSGLDCESSMMCSEREDETTLEEGKLGEALATGITTTEREGGSAGYVAASATIGKAV-TTSSADANGAVAPHTWTDREPTNSSVVTTATWFVSNDNGAGGNRLDGVRRGQSEIGLDRGRDGG--RRSRSHKQDIDIWDFERIVRTPLLAVAFEDYSKKALCHESFLFLSEVSRYQNGDYAMATRASSGSSCPTQFGTFCYITDTFIKAGSPEEVNISDKERKLILALYHKGEELFEDVNEEERRMIFRRAYLAVKRMLEANLLLRFLNTDRFKSVEMQKEDTQVMVDSPHLQAGVAVS 612          
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: D7FTW1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 1.390e-88
Identity = 181/301 (60.13%), Postives = 205/301 (68.11%), Query Frame = 1
Query:    7 VRTASGVSSGRSRDSSRIRADSEEEVRLEEGDLGGVPGKGETPTAGGDGDVGNVVASAVIGNGVITTPTADTNGAVAAGTWNEREPINTSVITKRSSSVSNDTSIDGNRRDVVQRGQRERGSFRGRRGGGXXRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSSPN-QFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPPLQAG 906
            VR   G SS     S R R DSEEE RLEEG   GVPGK  T  AGGDGD G+V  SA IG G  T PTAD +GAVA  TWNEREP N+SV+ + SSSVSND S  G RR   QR QR RGS R R  G   R R +REEMEVW+FER+A TPLLA AFEDYSKRALCHESVLFL+EVSRYQ+ +Y  PT+  + SSP  QFG+FC+IT+TFIKAGS EEVNI                           R+IF RAY +VK+MLEANL+ RFLNTDRFK+VR+QREN++AMM SPP Q G
Sbjct:  200 VRRELGFSSVIGGGSQRTRGDSEEEARLEEGQREGVPGKDTTTAAGGDGDTGDVPTSAAIGRGATTAPTADADGAVAPCTWNEREPTNSSVVAEGSSSVSNDNSTRG-RRGAFQRVQRARGSGRDR--GCSSRSRSDREEMEVWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTRASSASSPRIQFGSFCYITDTFIKAGSSEEVNI---------------------------RMIFSRAYRDVKNMLEANLVLRFLNTDRFKNVRVQRENMKAMMGSPPPQEG 470          
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: D7G2T5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T5_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 9.030e-79
Identity = 152/202 (75.25%), Postives = 164/202 (81.19%), Query Frame = 1
Query:  325 GNRRDVVQRGQRERGSFRGR---RGGGXXRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSS-PNQFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPP-LQAGVAA 915
            GNRRD +QRGQR   S RGR       XX    +R  MEVWNFERLARTPLLA AFEDYSKRALCHESVLFL+EVSRYQ +DYAT  +  + SS P QFGTFC+IT+TFIK GSPEEVNISDADKK IL++Y KGEE F  VNEE+RR+IF  AYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPP L AGV A
Sbjct:   82 GNRRDALQRGQRN--STRGRGXXXXXXXXXXXQDRGVMEVWNFERLARTPLLAAAFEDYSKRALCHESVLFLSEVSRYQSDDYATSARPSSESSCPTQFGTFCYITDTFIKGGSPEEVNISDADKKAILDVYHKGEESFGGVNEEDRRMIFSPAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPPMLPAGVGA 281          
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: D7FTW2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 1.820e-72
Identity = 136/194 (70.10%), Postives = 157/194 (80.93%), Query Frame = 1
Query:  316 SIDGNRRDVVQRGQRERGSFRGRRGGGXXRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSS-PNQFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPP 894
            SI GNR D V+RGQ ERG  RGR GG   R R  ++++++W+FER+ RTPLLAVAFEDYSKRALCHES LFL+EVSRYQ+ DYAT  +  + SS P QFGTFC+IT+TFIKAGS EEVNISD ++K IL LY KGEE FEDVN EERR+IF RAYL VK MLEANLL RFLNTDRFKS+ MQ+EN Q M+DSPP
Sbjct:  171 SIGGNRLDAVRRGQTERGDDRGRDGG--RRSRSHKQDIDLWDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTKRASSGSSFPTQFGTFCYITDTFIKAGSHEEVNISDKERKLILALYHKGEELFEDVNVEERRMIFRRAYLAVKRMLEANLLLRFLNTDRFKSLEMQKENTQVMVDSPP 362          
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: D7FTW0_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 8.850e-72
Identity = 136/194 (70.10%), Postives = 158/194 (81.44%), Query Frame = 1
Query:  316 SIDGNRRDVVQRGQRERGSFRGRRGGGXXRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSS-PNQFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPP 894
            SI GNR D V+RGQ ERG  RGR GG   R R  ++++++W+FER+ RTPLLAVAFEDYSKRALCHES LFL+EVSRYQ+ DYAT  +  + SS P QFGTFC+IT+TFIKAGSPEEVNISD ++K IL LY KGEE FEDVN+ ERR+IF RAYL VK MLEANLL RFLNTDRFKS+ MQ+EN Q M+DSPP
Sbjct:  310 SIGGNRLDAVRRGQSERGDDRGRDGG--RRSRSHKQDIDLWDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTIRASSGSSFPTQFGTFCYITDTFIKAGSPEEVNISDKERKLILALYHKGEELFEDVNDAERRMIFRRAYLAVKRMLEANLLLRFLNTDRFKSLEMQKENTQVMVDSPP 501          
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: A0A6H5LA03_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA03_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 8.590e-58
Identity = 146/242 (60.33%), Postives = 162/242 (66.94%), Query Frame = 1
Query:  211 TADTNGAVAAGTWNEREPINTSVITKRSSSVSNDTSIDGNRRDVVQRGQRERGSFRGRRGGGXXRGRPE-----REEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSS-PNQFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPP-LQAGVAA 915
            T D +GA AA             + +  SS+S+  S  GNRRD +QRGQR   S  G  G  XX          R  MEVW+FERLARTPLLAVAFEDYSKRALCHESVLFL+EVS YQ++DYAT T+  + SS P QFGT C+IT+TF KAGSPEEVN SDADKK I E            N+      F  AYL+VKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPP L AGV A
Sbjct:  408 TGDDDGATAAXXGXXXXAAPARGLARGISSLSSH-STGGNRRDALQRGQRN--STCGHGGXXXXXXXXXXXXXGRGVMEVWSFERLARTPLLAVAFEDYSKRALCHESVLFLSEVSWYQNDDYATQTRASSGSSCPTQFGTLCYITDTFTKAGSPEEVNTSDADKKAIFE------------ND------FSLAYLKVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPPVLPAGVGA 628          
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Match: D7FTV9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV9_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 3.880e-51
Identity = 99/161 (61.49%), Postives = 118/161 (73.29%), Query Frame = 1
Query:  427 MEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDPTRSSPN-QFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQAMMDSPPLQAG 906
            MEVW+FER+A TPLLA AFEDYSKRALCHESVLFL+EVSRYQ+ +Y  PT+  + SSP  QFG+FC+IT+TFIKAGSPEEVNI                           R+IF RA+ +VK+MLEANL+ RFLNTDRFK+VR+QREN++AMM SPP Q G
Sbjct:    1 MEVWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTRASSASSPRIQFGSFCYITDTFIKAGSPEEVNI---------------------------RMIFSRAHRDVKNMLEANLVLRFLNTDRFKNVRVQRENMKAMMGSPPPQEG 134          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8730.20196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G2T7_ECTSI1.880e-16990.85RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5LEP9_9PHAE5.930e-10265.90RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2T8_ECTSI6.590e-10166.34RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JE98_9PHAE1.560e-9762.54RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW1_ECTSI1.390e-8860.13RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2T5_ECTSI9.030e-7975.25RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW2_ECTSI1.820e-7270.10RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW0_ECTSI8.850e-7270.10RGS domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5LA03_9PHAE8.590e-5860.33RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTV9_ECTSI3.880e-5161.49RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8730contigEcto-sp13_S_contig8730:522..5585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score72.8
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog2880.D8LLA9
Model size2883
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Cds size495
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8730.20196.1prot_Ecto-sp13_S_contig8730.20196.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8730 948..3623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.691327-UTR-Ecto-sp13_S_contig8730:521..9471681464145.691327-UTR-Ecto-sp13_S_contig8730:521..947Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8730 522..947 +
1681464145.7431517-UTR-Ecto-sp13_S_contig8730:3623..55851681464145.7431517-UTR-Ecto-sp13_S_contig8730:3623..5585Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8730 3624..5585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.7048361-CDS-Ecto-sp13_S_contig8730:947..10661681464145.7048361-CDS-Ecto-sp13_S_contig8730:947..1066Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8730 948..1066 +
1681464145.716602-CDS-Ecto-sp13_S_contig8730:2225..23541681464145.716602-CDS-Ecto-sp13_S_contig8730:2225..2354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8730 2226..2354 +
1681464145.725857-CDS-Ecto-sp13_S_contig8730:2952..30331681464145.725857-CDS-Ecto-sp13_S_contig8730:2952..3033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8730 2953..3033 +
1681464145.7348316-CDS-Ecto-sp13_S_contig8730:3457..36231681464145.7348316-CDS-Ecto-sp13_S_contig8730:3457..3623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8730 3458..3623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8730.20196.1

>prot_Ecto-sp13_S_contig8730.20196.1 ID=prot_Ecto-sp13_S_contig8730.20196.1|Name=mRNA_Ecto-sp13_S_contig8730.20196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
MEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPT
KDPTRSSPNQFGTFCFITNTFIKAGSPEEVNISDADKKRILELYQKGEEH
FEDVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSVRMQRENVQA
MMDSPPLQAGVAAA*
back to top

mRNA from alignment at Ecto-sp13_S_contig8730:522..5585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8730.20196.1 ID=mRNA_Ecto-sp13_S_contig8730.20196.1|Name=mRNA_Ecto-sp13_S_contig8730.20196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5064bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8730:522..5585+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCACGGTAAGAACAGCGTCAGGGGTGTCGTCGGGCAGAAGCCGCGACTC CTCAAGGATACGTGCCGACAGCGAAGAGGAAGTCAGGCTCGAGGAAGGAG ATCTTGGAGGAGTCCCGGGCAAGGGTGAAACACCAACGGCAGGAGGAGAT GGTGACGTTGGCAACGTCGTCGCCTCGGCCGTCATTGGTAACGGTGTGAT TACCACACCCACCGCCGACACCAACGGTGCTGTTGCTGCCGGTACGTGGA ACGAGCGGGAACCAATCAATACCTCCGTTATTACGAAGCGATCGTCGTCC GTATCCAACGACACAAGCATCGACGGCAACAGACGCGACGTCGTCCAGAG GGGGCAGAGGGAGAGGGGTAGCTTCCGCGGCCGCCGTGGCGGTGGTGGCG GTCGAGGCCGTCCGGAAAGAGAGGAGATGGAGGTGTGGAACTTCGAACGG CTTGCGAGGACGCCGCTGCTAGCCGTCGCGTTCGAGGACTATTCCAAGAG GGCGCTTTGCCACGAGTCGGTTCTCTTTCTGACCGAGGTTTCTCGGTAAG TAACGCCGGGGGGGAGAGGGACACCAGAGAAGCAGATACGCAATGGTCCC TCTGTAGTGCCGGTTGAATGGTACCGGTGCCTGGATAGTGCCGGTGTTCC GGCAGGCATATGCTGGCGCTGTTCAAGGACCACCACTGTATCTTACGCGA GGATCAAGGATGATGCGGTGGCATGCATGGTGTTTTGCGCATATTGTTCC TTCCCCCCTCTTGTTCTTGGCCGTGGTTTCCGACACTATCGCGTTGTGGA TTGGACGCCTTGGTAAGCCGCAAGCAGTGAACGAAGAGTTTCTGTGTCCT GGTGCGTGATTCCCCTGCCTTCTGATTGTAGCCATTTCGTTTCGAATGCG TGCGGCCGCTCCTACGGGCTACCCGGTTGTGCATTCTGATTGAATCGACT TGAAGTACCTCCAGTTGAGTCATTTAGGAAAGCCACTAGCGGTTGGTGCC GCAAACCTTCGCTTGGGCGGAGTGTTGTCCCTCCCCATCTCGAGGATACA TCGATGTGTACTCGTTTGGACCCGCCGTTGCGACCGTAGATTTCTTTCGG GGAGGGTTGGATGGCCGTTCCGACTTTGTCACGACGTTGGTCACTGTGTA AGACGTTGGCTACTGTATTTCGCCCTGACACAGTGCTGCGTCTGGCATCG TGTTCCGGCCGTGTAAAGGGGAACCACTTATCAAGCATGTCCAGATTTCC AGGGCAAACGCTTGTCTGTCTATATCATTTGCCACGGCGTACCTGCCCGG CAATTCCGGCTGCGCGCTGGGTCCCGTTTGTTTGGCCGCCGCCGTCATGT CACGCTCGCTACGTATTTCGTATGTGTTGAGGCGCATGCGACGTGCAAAA CGCGATCGAGTGCATATCCTTCTCCAATAAAAGACTTTCAAGCCGCCATG GGGCGCCTACCTTAGGTAACATCAACTTGTGCGAAGGAGGAATCTGAGGG CCCCGAAAACTGTCATGTCGTGTCCGGAGTGTTGTCACTGCTGTTTGTCC ATGCATGGTTGGCAGAGTTCGATAGTGGAACGAACCGAAATACCGCATCC GGGCTAAGATATTCTACAAACAAGTCTAGGTGGAGGCAAGTTTTGACCCC ATGTACTCTCGCTCTTCGTCGCCCAAACCCGCTTTTCCCTACTTCTCGCG TCAGGTATCAGCATGAAGACTACGCTACCCCGACTAAGGATCCTACCCGG TCCTCTCCGAACCAGTTCGGCACGTTCTGCTTCATCACAAACACCTTCAT TAAGGCCGGCTCGCCGGAGGAAGTGAACATCAGGTGTGGAGCGGGGAAAA CAGGGAACGCTGTGAACATGACTCAAACACACGGCGGCGGTCGATGTTCA TATTCGTGATTCACAACGGCATAAAAATCCAGCTGGTAACAAGTGATGTT TGCGTGGCGGCGACGAATATCGTCAAATTATCTCGGAAACGGCGGTTATA TCATGAGACGCTGTCAGGGCTCGAGGGAATCGCTCGGTGCAGGTTGAGCC TACGCTTTTCATGCGGTCTAGTACTCGGTGATGGGTTAAATGACCTTTCC TTGTGCTTGTTGCATCGAACTATCTTTCCCTCTAAGGGCGTGTGTCTTCC GCAGTACCAGCATGAACATGCCACGTTCCAAGAGCCCAACGTCAGGCCAC AAGCCTCGTACAAGTTTGAGATGACCACCAATGTTTTTTCAGGCTGCTTG TGTGGACGCCATCAGTTCCGGTGGACTCGAACGGTATTCCAGGATTCAGG GTGGAAAGTGTCTGCGGAGCTCCCGTACCGACAGCCTGCTACCGAGACTT CTGTTGCCTGCTGTTGTAGCAGAGAGAGAAAATCGCTTTGTCGCGTACGA CGTTTGATTCAGTTTTTCTCTCGTCATTCAGCGACGCGGACAAGAAGCGG ATACTGGAGTTGTACCAGAAGGGCGAAGAGCACTTCGAGGACGTCAACGA GGAGGAGAGAAGGTGAGCGACGAGACACAGGAAGCACACAAGAAAGTACG CGTACTCAGCAGTCGTTTCTGGCGCTTGTGCATTCTCTCGTTCCTCCTTG TTGGGTTTGGAAGATAACGTACACGGGTTCTTTTCATCGGGGTCGTCTCA CTTTCGCGGACATTGGAGAGTACCTTTCCTGAATGTGTTTTGTTCTCCCA CACTGTTCCCGACTCGTGAGTATGTGAACGATGTGGGTGAAATATGTTCT ATTGGATGTAGTGCTGCCTCCCCCCCCCTCAGTCCACGATTCCATTATAT AAGTTTTGCGTGTGAGCGTCTCGGCAGGGATGTGTGTCACAGCTATGCCC AGGCTTACTGAGGCAAACCAATGACAACCCCCACCCCCCCCACCAATCCG CAACCTAACCCCTCAAAACTCAATTACGGCGTCCAGGTTGATTTTTGGAC GAGCGTATCTGGAGGTGAAGAGTATGCTGGAAGCCAATCTCCTTCGCCGC TTTCTGAACACAGACCGCTTCAAGAGCGTGAGGATGCAGAGGGAGAACGT CCAGGCCATGATGGACTCCCCGCCCCTACAGGCGGGTGTAGCAGCTGCGT AGACGTGAGGACATATAGCTAGCTAGGCAGGAGCAACAATACGGCCGGGG CAGGGTTTCTGGTGGATGTAGGATATGGCTACCGTAGAGAATTTTCGGAA AGGTTTTCTTTTTCATACTCACTCATTCCCTTCCTCCAGTCTTTCATATC TTCAACAGTCACGCAGAAGCAGCCAGCCCCGGGTGATATTGGTCTTTCAT GTCTTCAACAGTCACGCAAAAGCAGCCAGCCCCGGGTGATATTGAGCAAG GTGGCTCACGGTATGGAACGAAAAGGTGTTGCCGTCGATAGAGAGGTCAA GTTCCACCCACTGGGCTGCAGGAGTAGCACCAACCCAAATGATGTTGATC GAGGGTGATCAGGCGGGGGTTTGGCGAATGAGGTGCTTGGCTGAAAGGAA TAGATTGATTGGTGGACCTTGACGCCAATCTCCCTAGACTTGCTTCAAGC ACCGGGAGTAATTGTCCAAGCTGAAATGAACCACCCCTTACCCGCAAGGG CGGCGCGGGGTCATTAGGACCTCGTTGTTTCGAGCTATATGCCCTTACCC TTCTTAATGGGAATGGGGATCCATCGAGAGGGAGAGAGAGAGAGCGTGCC AAGCAACGCTGCTTGAAGCTGGACTCGACGGCAGGTCCACGAGGATTGCT GTGTGCACCGGGCATCTGAACACGTGTTGCCGGAAACGAGGCACACTTTT TCGGCGTCCTCCCCAGCTCTCGGTGAGGTACATTGCAAAGATAGTTTTGT CTAAGGCGAAAAATATCGAAACCGAAATGCTATGAGTGGAAAGAGCGAGG GAGGGAGAATTTCATGCACGTTTGAGAGAAAACAGGACATGCCTTTTCAG TTAGATGGGCACGCAAGGGAGGGCATCTGCCCCCAAGTGTTCCGATCGGC CTTTGTGCGGTGCGGCAGCGGTGGACCAACTATAGTTAAATTTGGAGTAA CATCGTGAGGTGGCAAAAGGGATTTAGTCTATTTCCGACTTTTTGGAGGT TGTTGCGCCGGATGATACGGCTTCGCATTTGGAGTGCACTATACATCATG GAGTTTGAATATGATAGGGTTGTAGAATAGCGAAGAAAACGTAAATATTG AGGTGCATTTGCAGGGGTTGGACCGCAGCAAGGGTAGGAAGTCGTACGGG CAAGTAGGTGGTAAGGTGTTTGCCTCACCGCGACAAGAACAGAGTTTAAA TGTCATTTATTTTCGCCTGTCCGTGTCGGATATCTTCGCTGGTGTTGATT GTCTAGAATGAGACTCGGCCAACCCGCCAAAGTATCGTGTTTGACCTCTT CCGCTTGTGTGGCACACAAAAGAGCAGGACGGGGATGACTCGTACGAAAT CTTCGAGGATAGCGGCGGAAGATGTACGCTTGAGCCCCAGCCGCCTAGTC TTTTCGGGGGTTTGTTGCTGTTTTGTGTGTTAATTCGCTATCTCCGTGAT TTAGTTGTTGATAAACAGGTGATCAGGGGTGGGGGAATTTATGCGGCTGC AGCCTGTTTAAATAGGCGTCCAAAGTCTTGGTCCGCAGTAGTAGCGTTGA TTACCCCGTTTCACTGCTAGTATCGAGCTGCGTGCGATACAAGTTCTTAA ACGAGGGAGTGGGAGAGGGATGTGAAGAGATCGGTGCATCCCGAGGTTTC GTCATTGCCACAAAAACGTTGTTGGAAATTGTCAATGTATAGCTGATACA GTTCGTACAAGAAGCCGTGGAAGAAGCGTTCTTCATTGGTCTGCTCAAAT TTGTTTTGCTTAATTCGTGCGTATGGTTGGTTTAGTTCGGTGATGTGCTG TTTTGGGCTGTTACATTTTCTACCTGGACTACACGTACTATTTTTATCGT CAACTTTCATATGATACGACTTGGGCTCTATCTACCTGGGGCCCAAGTTT CAATGTAAAAACGGCAACCAAAAAAACCTCCTGATCGACCAGAACTTGGA CTATATATAGAGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8730:522..5585+

>mRNA_Ecto-sp13_S_contig8730.20196.1 ID=mRNA_Ecto-sp13_S_contig8730.20196.1|Name=mRNA_Ecto-sp13_S_contig8730.20196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8730:522..5585+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTGTGGAACTTCGAACGGCTTGCGAGGACGCCGCTGCTAGCCGT
CGCGTTCGAGGACTATTCCAAGAGGGCGCTTTGCCACGAGTCGGTTCTCT
TTCTGACCGAGGTTTCTCGGTATCAGCATGAAGACTACGCTACCCCGACT
AAGGATCCTACCCGGTCCTCTCCGAACCAGTTCGGCACGTTCTGCTTCAT
CACAAACACCTTCATTAAGGCCGGCTCGCCGGAGGAAGTGAACATCAGCG
ACGCGGACAAGAAGCGGATACTGGAGTTGTACCAGAAGGGCGAAGAGCAC
TTCGAGGACGTCAACGAGGAGGAGAGAAGGTTGATTTTTGGACGAGCGTA
TCTGGAGGTGAAGAGTATGCTGGAAGCCAATCTCCTTCGCCGCTTTCTGA
ACACAGACCGCTTCAAGAGCGTGAGGATGCAGAGGGAGAACGTCCAGGCC
ATGATGGACTCCCCGCCCCTACAGGCGGGTGTAGCAGCTGCGTAG
back to top