prot_Ecto-sp13_S_contig8726.20193.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8726.20193.1
Unique Nameprot_Ecto-sp13_S_contig8726.20193.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length132
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8726.20193.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 2.320e-70
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0 
Query:   12 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGDEGSAASKPADAPYVLTKPMDLVRVRGFGSGSSAGFFPGRDGGGRG 132
            MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDG+EGSAASK ADAPYVLTKPMDLVRVRGFGSGSSAG+FPGRDGGGRG
Sbjct:    1 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGRDGGGRG 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8726.20193.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJE9_ECTSI2.320e-7097.52PTIF2, plastid translation intiation factor 2 n=2 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.515

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8726contigEcto-sp13_S_contig8726:539..1967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8726.20193.1mRNA_Ecto-sp13_S_contig8726.20193.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8726 538..1967 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8726.20193.1 ID=prot_Ecto-sp13_S_contig8726.20193.1|Name=mRNA_Ecto-sp13_S_contig8726.20193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
TASRSFCTALDMAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGG
AKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGDEGSAASKPADAPY
VLTKPMDLVRVRGFGSGSSAGFFPGRDGGGRG
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