mRNA_Ecto-sp13_S_contig8726.20193.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8726.20193.1
Unique NamemRNA_Ecto-sp13_S_contig8726.20193.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8726.20193.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 2.320e-70
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1 
Query:   34 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGDEGSAASKPADAPYVLTKPMDLVRVRGFGSGSSAGFFPGRDGGGRG 396
            MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDG+EGSAASK ADAPYVLTKPMDLVRVRGFGSGSSAG+FPGRDGGGRG
Sbjct:    1 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGRDGGGRG 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8726.20193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJE9_ECTSI2.320e-7097.52PTIF2, plastid translation intiation factor 2 n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8726contigEcto-sp13_S_contig8726:538..1967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score237.7
Seed ortholog evalue3.2e-60
Seed eggNOG ortholog2880.D7FJE9
Model size399
KEGG koko:K02519
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons3
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1145@2759
Cds size396
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.453747-CDS-Ecto-sp13_S_contig8726:538..6531681464145.453747-CDS-Ecto-sp13_S_contig8726:538..653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8726 539..653 -
1681464145.467052-CDS-Ecto-sp13_S_contig8726:1124..11901681464145.467052-CDS-Ecto-sp13_S_contig8726:1124..1190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8726 1125..1190 -
1681464145.4805422-CDS-Ecto-sp13_S_contig8726:1752..19671681464145.4805422-CDS-Ecto-sp13_S_contig8726:1752..1967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8726 1753..1967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8726.20193.1prot_Ecto-sp13_S_contig8726.20193.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8726 539..1967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8726.20193.1

>prot_Ecto-sp13_S_contig8726.20193.1 ID=prot_Ecto-sp13_S_contig8726.20193.1|Name=mRNA_Ecto-sp13_S_contig8726.20193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
TASRSFCTALDMAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGG
AKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGDEGSAASKPADAPY
VLTKPMDLVRVRGFGSGSSAGFFPGRDGGGRG
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mRNA from alignment at Ecto-sp13_S_contig8726:538..1967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8726.20193.1 ID=mRNA_Ecto-sp13_S_contig8726.20193.1|Name=mRNA_Ecto-sp13_S_contig8726.20193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1430bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8726:538..1967- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGCGTCACGGTCGTTTTGCACCGCTCTCGACATGGCTGCCGCGTGGCG
TGGGACGGTCTTTACCCTCCTCACAGCGGCTTGCGCATCAGGCTTCGTCC
AGCCAGGATGCCCAGGAGCGCTCGCAGGTAGAGAGTGGGCCAGGGGCGGG
GCCAAGAGCTGCGCAAGACCAGTGTGCTCGAGCGTGCTTCGTATGTCGGA
TCACACGGAGGACAGGTGCGTTGCGCGCGCCGGCCGCTGGTGTGCACGAA
AAATATGAAAACTGCTGCTGTGCTGTAGACGCGAGGAAAGTTGAACAAAC
GTATGCCAAGCCCGTTTGGTGCGTGAGCGGTTGTCCAGCGACTTCCCAAC
ACATGCGAAAGTAGCTGCTGCAGCTCGAGTGCGCTGACTGCTGTTGGGTA
TGTGTGTAATCGATCACTGCTGCAATGGCGGAGCAAAGGGCCCTGACGAG
AGGAACGTTCAGTGGGCTCTTTTCAGGGTTGATGGCTGATGGTCAAGGAG
CGATGCGTTCATGTGCTCCAAGCTTGTCCCGATTTTTCTCATGTTGCATA
TTCTCAGCACCTATCATCATTGAGTCAGTCAGGCGACCTGATCTTACTAG
GCAGCCACAGTAGTAACCCTCCCCCGTACCCCTGACCACTCCGCCCTTCT
TTTGTGTGCACACATGCGGCGGGTCTTGAGGATTATCACACACCCGGTTG
CAGTGCGTCGATGCACACAATGTATCACTCGACTACTTCTGTTTTTGCCT
CCGGTTGAACCTCCTCGTGCACAACAGGCCAAGAACGCAGGTGTTTGAGA
GCAGCGGCGGCGGGGATGGCGACGAGGGTTCCGCAGCATCGAAGTGAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGCGTTCAGAAAGAGAGGAGCTCTTG
GTGTTTGATGTTGTCATGAGTGCACTTATTGCTTATCGCCAGCGCGCGGT
GTTTGGCAACCTCCACCCAATGAAAGTCCCTTGGTCCGCCGGCGTCCCCC
CGCTAGCCGGTACACCTGATGTCGCTGTCGCTGTCGGTGTGGTGCGCTTG
GGCTGGCATGCACGCGTTCGATCAAGACCGCGTGTACAAGGCTACCGTGT
GTAGCACAAAAAACCACCAGTGCACGTCCTATTTTAGTGAACACGTAAGG
AAATCGAGCCATCACCAGCAACACTTCAGCGGTCTACAGATTTTTCGCGT
GCAGTGGTTGCGACATGTCGCTCGACTGCCTCAGCACGAGAGCCCATGTA
GGTATGATGACGAAGGCGGGCAATGAAGTGACGCAATCAAACCCTTAACC
CCCCCCATGCTCAGGCCGGCTGACGCCCCATATGTACTGACGAAACCGAT
GGACCTGGTACGAGTGCGGGGTTTCGGCAGCGGTTCGTCGGCGGGTTTCT
TCCCCGGGAGGGATGGCGGCGGGAGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8726:538..1967-

>mRNA_Ecto-sp13_S_contig8726.20193.1 ID=mRNA_Ecto-sp13_S_contig8726.20193.1|Name=mRNA_Ecto-sp13_S_contig8726.20193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8726:538..1967- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGCGTCACGGTCGTTTTGCACCGCTCTCGACATGGCTGCCGCGTGGCG
TGGGACGGTCTTTACCCTCCTCACAGCGGCTTGCGCATCAGGCTTCGTCC
AGCCAGGATGCCCAGGAGCGCTCGCAGGTAGAGAGTGGGCCAGGGGCGGG
GCCAAGAGCTGCGCAAGACCAGTGTGCTCGAGCGTGCTTCGTATGTCGGA
TCACACGGAGGACAGGCCAAGAACGCAGGTGTTTGAGAGCAGCGGCGGCG
GGGATGGCGACGAGGGTTCCGCAGCATCGAAGCCGGCTGACGCCCCATAT
GTACTGACGAAACCGATGGACCTGGTACGAGTGCGGGGTTTCGGCAGCGG
TTCGTCGGCGGGTTTCTTCCCCGGGAGGGATGGCGGCGGGAGGGGG
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